Wall clock time and date at job start Mon Mar 30 2020 05:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00129 * 2 1 4 4 H 1.48501 * 109.47438 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47045 * 299.99992 * 3 2 1 6 6 H 1.48501 * 109.46950 * 59.99783 * 3 2 1 7 7 C 1.37878 * 120.00126 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00306 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99902 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.46959 * 299.99551 * 9 7 2 11 11 C 1.50701 * 109.47269 * 179.97438 * 9 7 2 12 12 C 1.38239 * 120.00564 * 299.99879 * 11 9 7 13 13 C 1.38220 * 120.01233 * 180.02562 * 12 11 9 14 14 C 1.38260 * 120.02855 * 0.02562 * 13 12 11 15 15 C 1.38195 * 120.01297 * 359.97438 * 14 13 12 16 16 C 1.38323 * 120.00866 * 119.72777 * 11 9 7 17 17 Cl 1.73601 * 120.01304 * 359.97315 * 16 11 9 18 18 C 1.52997 * 109.47078 * 59.99463 * 9 7 2 19 19 F 1.39897 * 109.47422 * 300.00142 * 18 9 7 20 20 F 1.39905 * 109.47157 * 60.00224 * 18 9 7 21 21 H 0.96999 * 120.00073 * 0.02562 * 1 2 3 22 22 H 1.07998 * 119.99337 * 0.02562 * 12 11 9 23 23 H 1.08005 * 119.98394 * 179.97438 * 13 12 11 24 24 H 1.08001 * 119.99797 * 179.97438 * 14 13 12 25 25 H 1.07993 * 120.00767 * 180.02562 * 15 14 13 26 26 H 1.08998 * 109.47533 * 179.97438 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8903 11 6 2.2304 -3.6446 0.0005 12 6 3.1345 -3.7811 -1.0362 13 6 4.0324 -4.8320 -1.0366 14 6 4.0265 -5.7475 -0.0006 15 6 3.1231 -5.6121 1.0364 16 6 2.2284 -4.5564 1.0407 17 17 1.0984 -4.3812 2.3469 18 6 0.3719 -2.5804 -1.2489 19 9 -0.5372 -1.5171 -1.2495 20 9 1.1765 -2.5065 -2.3910 21 1 -0.4850 0.8400 -0.0004 22 1 3.1393 -3.0666 -1.8460 23 1 4.7384 -4.9384 -1.8471 24 1 4.7280 -6.5686 -0.0016 25 1 3.1189 -6.3270 1.8458 26 1 -0.1728 -3.5245 -1.2492 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260500456.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:49 Heat of formation + Delta-G solvation = -69.459710 kcal Electronic energy + Delta-G solvation = -16011.486163 eV Core-core repulsion = 12945.314990 eV Total energy + Delta-G solvation = -3066.171173 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.032 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -47.23360 -45.11633 -38.83108 -35.86073 -33.93188 -31.56435 -30.19654 -27.91974 -24.67710 -22.63135 -22.02877 -20.14248 -16.75767 -16.54269 -15.76982 -15.51627 -15.18652 -14.67563 -14.36720 -13.93673 -13.22957 -12.87945 -12.74965 -12.10937 -11.89257 -11.65465 -11.35345 -11.02386 -11.01182 -10.87699 -10.82354 -10.51113 -10.31168 -9.81515 -9.59673 -9.10188 -8.38996 -8.33261 -7.97049 -5.94288 -4.09255 1.67622 1.81667 2.71878 3.30076 3.37721 3.41926 4.15064 4.42490 5.19715 5.24319 5.28814 5.36222 5.51007 5.76308 5.93415 6.12113 6.20876 6.33575 6.43551 6.63211 6.81334 6.94493 7.02221 7.37626 7.51585 7.87006 8.10997 8.83692 9.51316 10.97938 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.023613 B = 0.009682 C = 0.009259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.498039 B = 2891.321197 C = 3023.291378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.064 3.936 3 Si 0.899 3.101 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.525 4.525 8 H 0.063 0.937 9 C 0.026 3.974 10 H 0.075 0.925 11 C -0.037 4.037 12 C -0.094 4.094 13 C -0.124 4.124 14 C -0.131 4.131 15 C -0.120 4.120 16 C -0.038 4.038 17 Cl -0.075 7.075 18 C 0.268 3.732 19 F -0.157 7.157 20 F -0.224 7.224 21 H 0.258 0.742 22 H 0.143 0.857 23 H 0.120 0.880 24 H 0.120 0.880 25 H 0.123 0.877 26 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.734 -9.255 0.052 9.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.563 4.563 8 H 0.082 0.918 9 C 0.007 3.993 10 H 0.092 0.908 11 C -0.038 4.038 12 C -0.112 4.112 13 C -0.143 4.143 14 C -0.149 4.149 15 C -0.139 4.139 16 C -0.065 4.065 17 Cl -0.046 7.046 18 C 0.213 3.787 19 F -0.138 7.138 20 F -0.206 7.206 21 H 0.069 0.931 22 H 0.160 0.840 23 H 0.138 0.862 24 H 0.138 0.862 25 H 0.141 0.859 26 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.441 -9.074 0.152 9.706 hybrid contribution 0.349 0.929 0.056 0.994 sum 3.790 -8.145 0.208 8.986 Atomic orbital electron populations 1.70495 1.05551 1.25962 1.45966 1.25038 0.95015 0.99419 0.94734 0.86421 0.80071 0.83312 0.77565 1.19713 1.20892 1.20960 1.20731 0.92982 0.88246 1.54317 0.91834 1.19074 0.93070 0.92189 0.94977 0.90756 1.20176 0.97232 0.94361 0.92013 1.21419 0.93600 0.97484 0.98741 1.21228 0.99196 0.95314 0.98514 1.20906 0.99319 0.99947 0.94720 1.20879 0.95997 0.97464 0.99571 1.20889 0.95690 0.98091 0.91792 1.98329 1.60829 1.97362 1.48069 1.22299 0.84222 0.87591 0.84612 1.93206 1.67027 1.57383 1.96181 1.92777 1.75742 1.97279 1.54787 0.93149 0.83960 0.86240 0.86155 0.85882 0.93082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.95 9.50 55.43 0.53 -23.43 15 2 C 0.06 1.75 5.20 -17.82 -0.09 1.66 15 3 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 15 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 15 5 H -0.28 -6.75 7.11 56.52 0.40 -6.34 15 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 15 7 C -0.53 -14.13 7.98 -34.44 -0.27 -14.40 15 8 H 0.06 1.72 7.60 -52.49 -0.40 1.32 15 9 C 0.03 0.63 2.26 -92.92 -0.21 0.42 15 10 H 0.07 1.90 6.17 -51.93 -0.32 1.58 15 11 C -0.04 -0.77 4.74 -104.59 -0.50 -1.27 15 12 C -0.09 -1.81 8.37 -39.59 -0.33 -2.14 15 13 C -0.12 -1.95 10.05 -39.58 -0.40 -2.34 15 14 C -0.13 -1.88 10.05 -39.59 -0.40 -2.28 15 15 C -0.12 -1.89 9.83 -39.54 -0.39 -2.28 15 16 C -0.04 -0.72 6.31 -39.50 -0.25 -0.96 15 17 Cl -0.07 -1.37 27.01 -51.86 -1.40 -2.77 15 18 C 0.27 6.39 4.83 37.16 0.18 6.57 15 19 F -0.16 -4.24 12.93 2.25 0.03 -4.21 15 20 F -0.22 -5.30 14.45 2.25 0.03 -5.27 15 21 H 0.26 7.01 8.31 -40.82 -0.34 6.67 15 22 H 0.14 2.87 6.38 -52.49 -0.33 2.53 15 23 H 0.12 1.52 8.06 -52.48 -0.42 1.10 15 24 H 0.12 1.34 8.06 -52.49 -0.42 0.91 15 25 H 0.12 1.62 8.06 -52.49 -0.42 1.19 15 26 H 0.05 1.08 8.14 -51.93 -0.42 0.66 15 LS Contribution 245.13 15.07 3.69 3.69 Total: -1.00 -28.60 245.13 -6.68 -35.28 By element: Atomic # 1 Polarization: -0.81 SS G_CDS: -1.88 Total: -2.69 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: -2.66 Total: -17.03 kcal Atomic # 7 Polarization: -23.95 SS G_CDS: 0.53 Total: -23.43 kcal Atomic # 9 Polarization: -9.54 SS G_CDS: 0.06 Total: -9.48 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 17 Polarization: -1.37 SS G_CDS: -1.40 Total: -2.77 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -28.60 -6.68 -35.28 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260500456.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.181 kcal (2) G-P(sol) polarization free energy of solvation -28.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds