Wall clock time and date at job start Mon Mar 30 2020 05:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00129 * 2 1 4 4 H 1.48501 * 109.47438 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47045 * 299.99992 * 3 2 1 6 6 H 1.48501 * 109.46950 * 59.99783 * 3 2 1 7 7 C 1.37878 * 120.00126 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00306 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99902 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.46959 * 299.99551 * 9 7 2 11 11 C 1.50701 * 109.47269 * 179.97438 * 9 7 2 12 12 C 1.38239 * 120.00564 * 299.99879 * 11 9 7 13 13 C 1.38220 * 120.01233 * 180.02562 * 12 11 9 14 14 C 1.38260 * 120.02855 * 0.02562 * 13 12 11 15 15 C 1.38195 * 120.01297 * 359.97438 * 14 13 12 16 16 C 1.38323 * 120.00866 * 119.72777 * 11 9 7 17 17 Cl 1.73601 * 120.01304 * 359.97315 * 16 11 9 18 18 C 1.52997 * 109.47078 * 59.99463 * 9 7 2 19 19 F 1.39897 * 109.47422 * 300.00142 * 18 9 7 20 20 F 1.39905 * 109.47157 * 60.00224 * 18 9 7 21 21 H 0.96999 * 120.00073 * 0.02562 * 1 2 3 22 22 H 1.07998 * 119.99337 * 0.02562 * 12 11 9 23 23 H 1.08005 * 119.98394 * 179.97438 * 13 12 11 24 24 H 1.08001 * 119.99797 * 179.97438 * 14 13 12 25 25 H 1.07993 * 120.00767 * 180.02562 * 15 14 13 26 26 H 1.08998 * 109.47533 * 179.97438 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8903 11 6 2.2304 -3.6446 0.0005 12 6 3.1345 -3.7811 -1.0362 13 6 4.0324 -4.8320 -1.0366 14 6 4.0265 -5.7475 -0.0006 15 6 3.1231 -5.6121 1.0364 16 6 2.2284 -4.5564 1.0407 17 17 1.0984 -4.3812 2.3469 18 6 0.3719 -2.5804 -1.2489 19 9 -0.5372 -1.5171 -1.2495 20 9 1.1765 -2.5065 -2.3910 21 1 -0.4850 0.8400 -0.0004 22 1 3.1393 -3.0666 -1.8460 23 1 4.7384 -4.9384 -1.8471 24 1 4.7280 -6.5686 -0.0016 25 1 3.1189 -6.3270 1.8458 26 1 -0.1728 -3.5245 -1.2492 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260500456.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:48 Heat of formation + Delta-G solvation = -84.199403 kcal Electronic energy + Delta-G solvation = -16012.125324 eV Core-core repulsion = 12945.314990 eV Total energy + Delta-G solvation = -3066.810334 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.032 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.16525 -47.09652 -40.19280 -37.24788 -35.75105 -33.37163 -31.50364 -29.54159 -26.70309 -24.20574 -23.39242 -21.76935 -18.65114 -18.14201 -17.63389 -17.23324 -16.80891 -16.42521 -16.03588 -15.49292 -14.66876 -14.58468 -14.24880 -13.83463 -13.75542 -13.47935 -13.01570 -12.92496 -12.73315 -12.45744 -12.34119 -12.27867 -11.96468 -11.62401 -11.22564 -10.96318 -10.45718 -9.67174 -9.41543 -8.01128 -6.20457 0.35168 0.49125 1.33857 1.39676 1.41778 1.52631 2.41577 2.83857 3.15081 3.48121 3.90997 4.04980 4.22235 4.28456 4.43479 4.58264 4.64772 4.75460 4.95400 5.22155 5.33638 5.44292 5.61147 5.71877 5.86146 6.02722 6.16949 6.75230 7.41833 8.90299 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.023613 B = 0.009682 C = 0.009259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.498039 B = 2891.321197 C = 3023.291378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.016 3.984 3 Si 0.954 3.046 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.278 1.278 7 C -0.535 4.535 8 H 0.053 0.947 9 C 0.027 3.973 10 H 0.056 0.944 11 C -0.069 4.069 12 C -0.114 4.114 13 C -0.116 4.116 14 C -0.113 4.113 15 C -0.115 4.115 16 C -0.053 4.053 17 Cl -0.081 7.081 18 C 0.261 3.739 19 F -0.178 7.178 20 F -0.224 7.224 21 H 0.256 0.744 22 H 0.123 0.877 23 H 0.153 0.847 24 H 0.167 0.833 25 H 0.153 0.847 26 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.590 -10.977 0.066 12.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.187 4.187 3 Si 0.780 3.220 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.204 1.204 7 C -0.572 4.572 8 H 0.072 0.928 9 C 0.008 3.992 10 H 0.073 0.927 11 C -0.070 4.070 12 C -0.132 4.132 13 C -0.134 4.134 14 C -0.131 4.131 15 C -0.133 4.133 16 C -0.080 4.080 17 Cl -0.053 7.053 18 C 0.206 3.794 19 F -0.159 7.159 20 F -0.206 7.206 21 H 0.066 0.934 22 H 0.141 0.859 23 H 0.170 0.830 24 H 0.185 0.815 25 H 0.170 0.830 26 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.305 -10.804 0.166 12.038 hybrid contribution -0.162 1.347 0.044 1.358 sum 5.144 -9.457 0.209 10.767 Atomic orbital electron populations 1.70630 1.06623 1.26367 1.47162 1.25757 0.95806 1.02405 0.94759 0.85557 0.79065 0.79839 0.77541 1.19272 1.20826 1.20420 1.20978 0.92713 0.89864 1.53687 0.92829 1.18888 0.93466 0.92804 0.94076 0.92658 1.19957 0.98106 0.94679 0.94212 1.21349 0.94888 0.98860 0.98098 1.21576 0.98255 0.93840 0.99744 1.21437 0.98655 1.00078 0.92884 1.21286 0.94780 0.96561 1.00708 1.21068 0.96673 0.98965 0.91285 1.98321 1.61293 1.97464 1.48185 1.22478 0.84256 0.88003 0.84654 1.93153 1.67736 1.58738 1.96305 1.92766 1.75826 1.97307 1.54716 0.93394 0.85950 0.82961 0.81529 0.82953 0.90074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -50.61 9.50 21.45 0.20 -50.41 15 2 C 0.02 0.88 5.20 84.65 0.44 1.32 15 3 Si 0.95 44.54 29.54 68.60 2.03 46.57 15 4 H -0.27 -12.20 7.11 99.48 0.71 -11.49 15 5 H -0.28 -13.05 7.11 99.48 0.71 -12.34 15 6 H -0.28 -12.67 7.11 99.48 0.71 -11.96 15 7 C -0.53 -29.35 7.98 25.60 0.20 -29.15 15 8 H 0.05 2.96 7.60 -2.91 -0.02 2.94 15 9 C 0.03 1.32 2.26 -12.29 -0.03 1.29 15 10 H 0.06 2.91 6.17 -2.39 -0.01 2.90 15 11 C -0.07 -2.86 4.74 -19.84 -0.09 -2.95 15 12 C -0.11 -4.25 8.37 22.27 0.19 -4.06 15 13 C -0.12 -3.22 10.05 22.27 0.22 -3.00 15 14 C -0.11 -2.68 10.05 22.26 0.22 -2.46 15 15 C -0.11 -3.18 9.83 22.29 0.22 -2.96 15 16 C -0.05 -1.93 6.31 22.32 0.14 -1.79 15 17 Cl -0.08 -2.94 27.01 -2.72 -0.07 -3.01 15 18 C 0.26 12.65 4.83 71.98 0.35 13.00 15 19 F -0.18 -9.87 12.93 44.97 0.58 -9.29 15 20 F -0.22 -10.76 14.45 44.97 0.65 -10.11 15 21 H 0.26 14.26 8.31 -92.71 -0.77 13.49 15 22 H 0.12 4.97 6.38 -2.91 -0.02 4.95 15 23 H 0.15 3.18 8.06 -2.91 -0.02 3.16 15 24 H 0.17 2.52 8.06 -2.91 -0.02 2.49 15 25 H 0.15 3.30 8.06 -2.91 -0.02 3.28 15 26 H 0.08 3.43 8.14 -2.39 -0.02 3.41 15 Total: -1.00 -62.64 245.13 6.46 -56.18 By element: Atomic # 1 Polarization: -0.37 SS G_CDS: 1.21 Total: 0.84 kcal Atomic # 6 Polarization: -32.63 SS G_CDS: 1.86 Total: -30.77 kcal Atomic # 7 Polarization: -50.61 SS G_CDS: 0.20 Total: -50.41 kcal Atomic # 9 Polarization: -20.63 SS G_CDS: 1.23 Total: -19.40 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Atomic # 17 Polarization: -2.94 SS G_CDS: -0.07 Total: -3.01 kcal Total: -62.64 6.46 -56.18 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260500456.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.019 kcal (2) G-P(sol) polarization free energy of solvation -62.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds