Wall clock time and date at job start Mon Mar 30 2020 05:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99951 * 2 1 4 4 H 1.48496 * 109.47023 * 90.00320 * 3 2 1 5 5 H 1.48507 * 109.46864 * 210.00148 * 3 2 1 6 6 H 1.48496 * 109.46929 * 330.00039 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99791 * 152.95234 * 7 2 1 9 9 C 1.50702 * 119.99745 * 332.95089 * 7 2 1 10 10 H 1.08998 * 109.47113 * 54.05980 * 9 7 2 11 11 C 1.50703 * 109.46807 * 174.06266 * 9 7 2 12 12 C 1.38235 * 120.00817 * 59.71966 * 11 9 7 13 13 C 1.38216 * 120.00977 * 179.74546 * 12 11 9 14 14 C 1.38259 * 120.02772 * 0.55648 * 13 12 11 15 15 C 1.38190 * 120.01656 * 359.69909 * 14 13 12 16 16 C 1.38327 * 120.00270 * 240.00144 * 11 9 7 17 17 Cl 1.73604 * 120.01711 * 359.97438 * 16 11 9 18 18 C 1.53001 * 109.47154 * 294.06100 * 9 7 2 19 19 F 1.39904 * 109.46881 * 305.99405 * 18 9 7 20 20 F 1.39896 * 109.46876 * 65.99428 * 18 9 7 21 21 H 0.97001 * 119.99756 * 174.60921 * 1 2 3 22 22 H 1.08005 * 119.99048 * 0.02562 * 12 11 9 23 23 H 1.08010 * 119.98495 * 180.25491 * 13 12 11 24 24 H 1.08007 * 119.99120 * 179.72112 * 14 13 12 25 25 H 1.07991 * 120.00911 * 180.02562 * 15 14 13 26 26 H 1.09000 * 109.47027 * 186.00307 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4402 -0.7001 6 1 1.4466 2.6526 -0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 2.9959 -1.2450 -0.4258 9 6 1.3746 -2.4281 0.5924 10 1 0.4013 -2.5964 0.1316 11 6 2.2637 -3.6179 0.3375 12 6 3.5576 -3.6310 0.8240 13 6 4.3713 -4.7244 0.5948 14 6 3.8957 -5.8007 -0.1311 15 6 2.6042 -5.7866 -0.6225 16 6 1.7872 -4.6946 -0.3884 17 17 0.1646 -4.6761 -1.0055 18 6 1.1987 -2.2366 2.1002 19 9 2.4264 -1.8858 2.6720 20 9 0.2671 -1.2199 2.3355 21 1 -0.4850 -0.8364 -0.0789 22 1 3.9311 -2.7885 1.3873 23 1 5.3808 -4.7359 0.9786 24 1 4.5336 -6.6529 -0.3137 25 1 2.2327 -6.6275 -1.1891 26 1 0.8430 -3.1658 2.5454 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260500459.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:51 Heat of formation + Delta-G solvation = -93.714196 kcal Electronic energy + Delta-G solvation = -15991.208146 eV Core-core repulsion = 12923.985219 eV Total energy + Delta-G solvation = -3067.222926 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.032 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -47.66065 -45.66431 -38.94585 -35.95793 -34.25617 -31.56871 -30.28825 -27.88484 -24.48998 -22.79101 -22.07937 -20.39682 -17.25876 -16.64626 -16.16268 -15.90235 -15.39715 -14.88204 -14.17808 -13.73815 -13.41740 -13.02605 -12.97202 -12.34495 -12.17721 -12.00326 -11.62623 -11.36658 -11.08307 -10.94731 -10.79530 -10.55975 -10.12293 -9.99820 -9.79374 -9.20322 -8.44691 -8.29593 -7.96415 -6.49355 -4.13318 1.58356 1.72222 2.62350 3.45861 3.49150 3.64270 4.06003 4.52162 4.95216 5.12610 5.15658 5.24478 5.40661 5.61950 5.77708 5.89282 6.01221 6.09753 6.19450 6.44127 6.65398 6.74339 6.84752 7.24476 7.27149 7.93008 8.39660 8.73643 9.49443 10.85742 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.024234 B = 0.009932 C = 0.009073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.119703 B = 2818.394136 C = 3085.338588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.046 3.954 3 Si 1.056 2.944 4 H -0.283 1.283 5 H -0.287 1.287 6 H -0.286 1.286 7 C -0.617 4.617 8 H 0.060 0.940 9 C 0.016 3.984 10 H 0.069 0.931 11 C -0.031 4.031 12 C -0.096 4.096 13 C -0.122 4.122 14 C -0.130 4.130 15 C -0.118 4.118 16 C -0.039 4.039 17 Cl -0.075 7.075 18 C 0.261 3.739 19 F -0.211 7.211 20 F -0.198 7.198 21 H 0.274 0.726 22 H 0.141 0.859 23 H 0.121 0.879 24 H 0.122 0.878 25 H 0.124 0.876 26 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.527 -9.878 1.114 10.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.165 4.165 3 Si 0.883 3.117 4 H -0.210 1.210 5 H -0.213 1.213 6 H -0.212 1.212 7 C -0.653 4.653 8 H 0.078 0.922 9 C -0.003 4.003 10 H 0.087 0.913 11 C -0.032 4.032 12 C -0.114 4.114 13 C -0.140 4.140 14 C -0.148 4.148 15 C -0.137 4.137 16 C -0.066 4.066 17 Cl -0.046 7.046 18 C 0.206 3.794 19 F -0.192 7.192 20 F -0.179 7.179 21 H 0.085 0.915 22 H 0.159 0.841 23 H 0.139 0.861 24 H 0.140 0.860 25 H 0.142 0.858 26 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.154 -8.206 1.139 9.268 hybrid contribution 0.112 -1.622 -0.075 1.628 sum 4.266 -9.828 1.064 10.767 Atomic orbital electron populations 1.70709 1.07517 1.31307 1.39838 1.25743 0.95845 1.02450 0.92416 0.83772 0.75185 0.75531 0.77176 1.20976 1.21305 1.21207 1.21439 1.04247 0.92817 1.46808 0.92209 1.19089 0.97729 0.93066 0.90466 0.91305 1.19942 0.95379 0.93370 0.94528 1.21350 0.92587 0.98308 0.99129 1.21226 0.99765 0.93970 0.99088 1.20923 0.95129 0.99005 0.99723 1.20887 0.94041 0.97307 1.01480 1.20887 0.86959 0.96673 1.02046 1.98333 1.21618 1.98345 1.86264 1.22418 0.73354 0.86190 0.97416 1.92817 1.46145 1.93774 1.86511 1.92970 1.65591 1.63816 1.95542 0.91500 0.84089 0.86097 0.86005 0.85765 0.91588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.18 12.32 55.43 0.68 -24.49 15 2 C 0.05 1.29 4.54 -17.82 -0.08 1.21 15 3 Si 1.06 25.16 29.98 -169.99 -5.10 20.06 15 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 5 H -0.29 -6.52 7.11 56.52 0.40 -6.12 15 6 H -0.29 -6.76 7.11 56.52 0.40 -6.36 15 7 C -0.62 -16.64 7.65 -34.44 -0.26 -16.91 15 8 H 0.06 1.65 7.65 -52.49 -0.40 1.25 15 9 C 0.02 0.38 2.00 -92.92 -0.19 0.19 15 10 H 0.07 1.72 5.05 -51.93 -0.26 1.45 15 11 C -0.03 -0.65 4.75 -104.59 -0.50 -1.15 15 12 C -0.10 -1.81 8.44 -39.59 -0.33 -2.14 15 13 C -0.12 -1.88 10.05 -39.58 -0.40 -2.27 15 14 C -0.13 -1.83 10.04 -39.59 -0.40 -2.23 15 15 C -0.12 -1.84 9.83 -39.55 -0.39 -2.23 15 16 C -0.04 -0.73 6.31 -39.50 -0.25 -0.98 15 17 Cl -0.07 -1.36 27.01 -51.86 -1.40 -2.76 15 18 C 0.26 6.00 4.76 37.16 0.18 6.17 15 19 F -0.21 -4.86 14.65 2.25 0.03 -4.83 15 20 F -0.20 -5.11 15.02 2.25 0.03 -5.08 15 21 H 0.27 7.98 7.10 -40.82 -0.29 7.69 15 22 H 0.14 2.78 6.48 -52.48 -0.34 2.44 15 23 H 0.12 1.50 8.06 -52.48 -0.42 1.08 15 24 H 0.12 1.32 8.06 -52.48 -0.42 0.90 15 25 H 0.12 1.62 8.06 -52.49 -0.42 1.19 15 26 H 0.07 1.31 8.14 -51.93 -0.42 0.89 15 LS Contribution 247.27 15.07 3.73 3.73 Total: -1.00 -29.14 247.27 -6.42 -35.56 By element: Atomic # 1 Polarization: -0.08 SS G_CDS: -1.78 Total: -1.86 kcal Atomic # 6 Polarization: -17.72 SS G_CDS: -2.62 Total: -20.33 kcal Atomic # 7 Polarization: -25.18 SS G_CDS: 0.68 Total: -24.49 kcal Atomic # 9 Polarization: -9.97 SS G_CDS: 0.07 Total: -9.90 kcal Atomic # 14 Polarization: 25.16 SS G_CDS: -5.10 Total: 20.06 kcal Atomic # 17 Polarization: -1.36 SS G_CDS: -1.40 Total: -2.76 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -29.14 -6.42 -35.56 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260500459.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.152 kcal (2) G-P(sol) polarization free energy of solvation -29.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds