Wall clock time and date at job start Mon Mar 30 2020 05:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99951 * 2 1 4 4 H 1.48496 * 109.47023 * 90.00320 * 3 2 1 5 5 H 1.48507 * 109.46864 * 210.00148 * 3 2 1 6 6 H 1.48496 * 109.46929 * 330.00039 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99791 * 152.95234 * 7 2 1 9 9 C 1.50702 * 119.99745 * 332.95089 * 7 2 1 10 10 H 1.08998 * 109.47113 * 54.05980 * 9 7 2 11 11 C 1.50703 * 109.46807 * 174.06266 * 9 7 2 12 12 C 1.38235 * 120.00817 * 59.71966 * 11 9 7 13 13 C 1.38216 * 120.00977 * 179.74546 * 12 11 9 14 14 C 1.38259 * 120.02772 * 0.55648 * 13 12 11 15 15 C 1.38190 * 120.01656 * 359.69909 * 14 13 12 16 16 C 1.38327 * 120.00270 * 240.00144 * 11 9 7 17 17 Cl 1.73604 * 120.01711 * 359.97438 * 16 11 9 18 18 C 1.53001 * 109.47154 * 294.06100 * 9 7 2 19 19 F 1.39904 * 109.46881 * 305.99405 * 18 9 7 20 20 F 1.39896 * 109.46876 * 65.99428 * 18 9 7 21 21 H 0.97001 * 119.99756 * 174.60921 * 1 2 3 22 22 H 1.08005 * 119.99048 * 0.02562 * 12 11 9 23 23 H 1.08010 * 119.98495 * 180.25491 * 13 12 11 24 24 H 1.08007 * 119.99120 * 179.72112 * 14 13 12 25 25 H 1.07991 * 120.00911 * 180.02562 * 15 14 13 26 26 H 1.09000 * 109.47027 * 186.00307 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4402 -0.7001 6 1 1.4466 2.6526 -0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 2.9959 -1.2450 -0.4258 9 6 1.3746 -2.4281 0.5924 10 1 0.4013 -2.5964 0.1316 11 6 2.2637 -3.6179 0.3375 12 6 3.5576 -3.6310 0.8240 13 6 4.3713 -4.7244 0.5948 14 6 3.8957 -5.8007 -0.1311 15 6 2.6042 -5.7866 -0.6225 16 6 1.7872 -4.6946 -0.3884 17 17 0.1646 -4.6761 -1.0055 18 6 1.1987 -2.2366 2.1002 19 9 2.4264 -1.8858 2.6720 20 9 0.2671 -1.2199 2.3355 21 1 -0.4850 -0.8364 -0.0789 22 1 3.9311 -2.7885 1.3873 23 1 5.3808 -4.7359 0.9786 24 1 4.5336 -6.6529 -0.3137 25 1 2.2327 -6.6275 -1.1891 26 1 0.8430 -3.1658 2.5454 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260500459.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:50 Heat of formation + Delta-G solvation = -109.089026 kcal Electronic energy + Delta-G solvation = -15991.874848 eV Core-core repulsion = 12923.985219 eV Total energy + Delta-G solvation = -3067.889629 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.032 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.55341 -47.57531 -40.29595 -37.33727 -36.09237 -33.34195 -31.57892 -29.48637 -26.52598 -24.36061 -23.43707 -22.01519 -19.17082 -18.25222 -18.02766 -17.52097 -16.99826 -16.36350 -15.74056 -15.59026 -14.95853 -14.58337 -14.50210 -14.18772 -13.93518 -13.78747 -13.34960 -13.05921 -12.59630 -12.53578 -12.39678 -12.13316 -11.96186 -11.77606 -11.34220 -11.11683 -10.29649 -9.75521 -9.49303 -8.65409 -6.27793 0.27460 0.41257 1.25362 1.52001 1.58219 1.76205 2.53771 2.76084 3.03785 3.24020 3.70054 3.93972 4.00940 4.18826 4.23700 4.33192 4.54438 4.57007 4.83565 5.02424 5.17147 5.36037 5.53184 5.67549 5.91483 6.00707 6.22148 6.58535 7.39601 8.68860 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.024234 B = 0.009932 C = 0.009073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.119703 B = 2818.394136 C = 3085.338588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.001 3.999 3 Si 1.092 2.908 4 H -0.280 1.280 5 H -0.270 1.270 6 H -0.284 1.284 7 C -0.621 4.621 8 H 0.046 0.954 9 C 0.014 3.986 10 H 0.053 0.947 11 C -0.064 4.064 12 C -0.114 4.114 13 C -0.114 4.114 14 C -0.111 4.111 15 C -0.114 4.114 16 C -0.055 4.055 17 Cl -0.083 7.083 18 C 0.256 3.744 19 F -0.212 7.212 20 F -0.218 7.218 21 H 0.262 0.738 22 H 0.123 0.877 23 H 0.155 0.845 24 H 0.169 0.831 25 H 0.153 0.847 26 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.465 -11.756 1.001 13.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.204 4.204 3 Si 0.916 3.084 4 H -0.206 1.206 5 H -0.195 1.195 6 H -0.210 1.210 7 C -0.657 4.657 8 H 0.065 0.935 9 C -0.005 4.005 10 H 0.071 0.929 11 C -0.065 4.065 12 C -0.133 4.133 13 C -0.131 4.131 14 C -0.129 4.129 15 C -0.132 4.132 16 C -0.082 4.082 17 Cl -0.054 7.054 18 C 0.202 3.798 19 F -0.194 7.194 20 F -0.199 7.199 21 H 0.072 0.928 22 H 0.141 0.859 23 H 0.173 0.827 24 H 0.186 0.814 25 H 0.171 0.829 26 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 6.104 -10.098 1.026 11.844 hybrid contribution -0.407 -1.181 -0.047 1.250 sum 5.696 -11.279 0.978 12.674 Atomic orbital electron populations 1.70818 1.08234 1.30553 1.42619 1.26864 0.95999 1.05534 0.92016 0.83289 0.74959 0.72696 0.77499 1.20573 1.19495 1.20952 1.21649 1.03500 0.94380 1.46149 0.93529 1.18946 0.97503 0.93600 0.90445 0.92895 1.19766 0.95998 0.93336 0.97432 1.21314 0.92550 0.99442 0.99954 1.21591 1.00661 0.92745 0.98148 1.21463 0.94725 0.99574 0.97141 1.21296 0.94212 0.96829 1.00898 1.21083 0.87231 0.97404 1.02467 1.98325 1.22339 1.98372 1.86334 1.22597 0.73044 0.86757 0.97367 1.92806 1.46230 1.93879 1.86446 1.92930 1.66375 1.64954 1.95646 0.92773 0.85864 0.82707 0.81365 0.82927 0.88010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.30 12.32 21.45 0.26 -53.03 15 2 C 0.00 0.07 4.54 84.66 0.38 0.45 15 3 Si 1.09 51.13 29.98 68.60 2.06 53.19 15 4 H -0.28 -12.82 7.11 99.48 0.71 -12.11 15 5 H -0.27 -11.75 7.11 99.48 0.71 -11.04 15 6 H -0.28 -13.08 7.11 99.48 0.71 -12.37 15 7 C -0.62 -34.09 7.65 25.60 0.20 -33.89 15 8 H 0.05 2.62 7.65 -2.91 -0.02 2.59 15 9 C 0.01 0.70 2.00 -12.28 -0.02 0.67 15 10 H 0.05 2.73 5.05 -2.39 -0.01 2.72 15 11 C -0.06 -2.64 4.75 -19.84 -0.09 -2.74 15 12 C -0.11 -4.17 8.44 22.26 0.19 -3.98 15 13 C -0.11 -3.05 10.05 22.27 0.22 -2.83 15 14 C -0.11 -2.58 10.04 22.26 0.22 -2.36 15 15 C -0.11 -3.12 9.83 22.29 0.22 -2.90 15 16 C -0.06 -1.99 6.31 22.32 0.14 -1.85 15 17 Cl -0.08 -2.98 27.01 -2.72 -0.07 -3.05 15 18 C 0.26 11.89 4.76 71.98 0.34 12.23 15 19 F -0.21 -9.81 14.65 44.97 0.66 -9.15 15 20 F -0.22 -11.47 15.02 44.97 0.68 -10.80 15 21 H 0.26 15.88 7.10 -92.71 -0.66 15.22 15 22 H 0.12 4.84 6.48 -2.91 -0.02 4.82 15 23 H 0.16 3.08 8.06 -2.91 -0.02 3.06 15 24 H 0.17 2.44 8.06 -2.91 -0.02 2.41 15 25 H 0.15 3.29 8.06 -2.92 -0.02 3.26 15 26 H 0.10 3.99 8.14 -2.39 -0.02 3.97 15 Total: -1.00 -64.22 247.27 6.70 -57.52 By element: Atomic # 1 Polarization: 1.21 SS G_CDS: 1.32 Total: 2.53 kcal Atomic # 6 Polarization: -39.00 SS G_CDS: 1.80 Total: -37.20 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: 0.26 Total: -53.03 kcal Atomic # 9 Polarization: -21.28 SS G_CDS: 1.33 Total: -19.94 kcal Atomic # 14 Polarization: 51.13 SS G_CDS: 2.06 Total: 53.19 kcal Atomic # 17 Polarization: -2.98 SS G_CDS: -0.07 Total: -3.05 kcal Total: -64.22 6.70 -57.52 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260500459.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.572 kcal (2) G-P(sol) polarization free energy of solvation -64.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds