Wall clock time and date at job start Mon Mar 30 2020 06:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 120.00614 * 2 1 4 4 H 1.48497 * 109.46837 * 269.99742 * 3 2 1 5 5 H 1.48504 * 109.47140 * 29.99411 * 3 2 1 6 6 H 1.48503 * 109.47365 * 149.99718 * 3 2 1 7 7 C 1.37880 * 119.99369 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99875 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00269 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47280 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47251 * 180.02562 * 10 9 7 12 12 C 1.38618 * 120.79765 * 264.99956 * 11 10 9 13 13 N 1.32319 * 119.10587 * 180.02562 * 12 11 10 14 14 C 1.31814 * 120.81521 * 0.02562 * 13 12 11 15 15 N 1.31780 * 121.75341 * 359.97438 * 14 13 12 16 16 C 1.32354 * 120.82275 * 0.02562 * 15 14 13 17 17 C 1.50698 * 120.44847 * 179.72797 * 16 15 14 18 18 F 1.39896 * 109.47059 * 4.99951 * 17 16 15 19 19 F 1.39900 * 109.46893 * 125.00202 * 17 16 15 20 20 F 1.39903 * 109.46876 * 244.99882 * 17 16 15 21 21 H 0.97004 * 119.99531 * 0.02562 * 1 2 3 22 22 H 1.09003 * 109.46914 * 60.00003 * 9 7 2 23 23 H 1.08996 * 109.47271 * 300.00283 * 9 7 2 24 24 H 1.08994 * 109.47254 * 59.99893 * 10 9 7 25 25 H 1.09004 * 109.47030 * 300.00037 * 10 9 7 26 26 H 1.07999 * 120.44819 * 359.97438 * 12 11 10 27 27 H 1.07995 * 119.12630 * 179.97438 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4468 2.6527 0.6999 6 1 3.5468 1.4400 0.7001 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2508 -2.4992 0.0005 10 6 2.2449 -3.6622 0.0005 11 6 1.4913 -4.9673 -0.0001 12 6 1.2259 -5.6342 1.1858 13 7 0.5620 -6.7781 1.1463 14 6 0.1556 -7.2836 -0.0012 15 7 0.3898 -6.6777 -1.1478 16 6 1.0480 -5.5301 -1.1863 17 6 1.3165 -4.8475 -2.5027 18 9 0.6801 -5.5508 -3.5310 19 9 0.8240 -3.5388 -2.4584 20 9 2.6949 -4.8192 -2.7407 21 1 -0.4850 0.8401 -0.0004 22 1 0.6245 -2.5571 -0.8897 23 1 0.6238 -2.5567 0.8902 24 1 2.8716 -3.6046 0.8904 25 1 2.8716 -3.6045 -0.8895 26 1 1.5572 -5.2260 2.1292 27 1 -0.3838 -8.2192 -0.0018 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260521376.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:19 Heat of formation + Delta-G solvation = -125.743587 kcal Electronic energy + Delta-G solvation = -18022.814894 eV Core-core repulsion = 14558.159445 eV Total energy + Delta-G solvation = -3464.655449 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -51.32944 -48.82219 -48.78544 -42.30618 -36.56218 -35.28487 -34.53016 -31.52264 -28.57827 -27.36427 -24.87543 -24.39468 -22.36146 -20.11597 -19.96097 -19.66590 -18.55275 -18.34719 -16.78916 -16.56897 -16.08616 -15.72311 -15.64097 -15.53443 -15.33782 -15.17039 -14.90454 -14.69367 -14.33623 -14.18512 -13.55796 -13.35515 -12.85748 -12.72703 -12.19866 -12.15854 -11.86163 -11.72231 -11.18782 -10.58542 -10.47594 -10.46921 -8.17012 -6.26434 -0.62006 -0.23140 1.27282 1.43326 1.44083 1.54465 2.32196 2.38746 2.44620 2.69629 3.06209 3.17324 3.22449 3.30836 3.51231 3.67768 4.08362 4.47043 4.66920 4.73614 5.00477 5.16906 5.51518 5.56222 5.69735 5.87516 6.23397 6.73869 6.89666 7.41925 8.94711 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.027930 B = 0.007636 C = 0.006659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.267912 B = 3665.740387 C = 4203.998647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.003 3.997 3 Si 0.959 3.041 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.259 1.259 7 C -0.535 4.535 8 H 0.065 0.935 9 C 0.018 3.982 10 C -0.076 4.076 11 C -0.124 4.124 12 C 0.163 3.837 13 N -0.499 5.499 14 C 0.285 3.715 15 N -0.496 5.496 16 C 0.067 3.933 17 C 0.518 3.482 18 F -0.166 7.166 19 F -0.161 7.161 20 F -0.167 7.167 21 H 0.262 0.738 22 H 0.021 0.979 23 H -0.005 1.005 24 H 0.098 0.902 25 H 0.070 0.930 26 H 0.207 0.793 27 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.125 -12.642 -0.424 13.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.195 4.195 3 Si 0.784 3.216 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.183 1.183 7 C -0.573 4.573 8 H 0.083 0.917 9 C -0.019 4.019 10 C -0.114 4.114 11 C -0.129 4.129 12 C -0.005 4.005 13 N -0.211 5.211 14 C -0.002 4.002 15 N -0.209 5.209 16 C -0.080 4.080 17 C 0.463 3.537 18 F -0.147 7.147 19 F -0.142 7.142 20 F -0.148 7.148 21 H 0.071 0.929 22 H 0.039 0.961 23 H 0.013 0.987 24 H 0.117 0.883 25 H 0.089 0.911 26 H 0.224 0.776 27 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 2.479 -13.409 -0.479 13.645 hybrid contribution 0.506 1.926 -0.415 2.034 sum 2.985 -11.484 -0.895 11.899 Atomic orbital electron populations 1.70095 1.07769 1.27604 1.51829 1.25880 0.95620 1.03076 0.94930 0.85530 0.78899 0.78859 0.78273 1.20285 1.21106 1.18339 1.21604 0.93636 0.91820 1.50239 0.91704 1.19312 0.94274 0.91567 0.96753 1.20795 0.97817 0.88598 1.04202 1.21837 0.98123 0.98698 0.94215 1.23765 0.89674 0.88601 0.98487 1.68536 1.09722 1.12004 1.30855 1.25816 0.93690 0.99713 0.80936 1.67999 1.12272 1.07288 1.33373 1.21274 0.99195 0.94583 0.92961 1.17936 0.74731 0.77022 0.84009 1.93198 1.81793 1.78518 1.61183 1.93317 1.87601 1.37205 1.96089 1.93199 1.30344 1.96332 1.94940 0.92945 0.96055 0.98657 0.88348 0.91121 0.77621 0.73806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.68 13.29 21.45 0.28 -55.40 15 2 C 0.00 0.15 5.46 84.66 0.46 0.62 15 3 Si 0.96 43.23 29.54 68.60 2.03 45.25 15 4 H -0.28 -12.28 7.11 99.48 0.71 -11.57 15 5 H -0.29 -12.70 7.11 99.48 0.71 -12.00 15 6 H -0.26 -11.00 7.11 99.48 0.71 -10.29 15 7 C -0.53 -28.85 9.11 25.60 0.23 -28.62 15 8 H 0.06 3.31 7.74 -2.91 -0.02 3.29 15 9 C 0.02 0.88 4.70 29.85 0.14 1.02 15 10 C -0.08 -2.81 4.62 29.85 0.14 -2.67 15 11 C -0.12 -4.06 5.14 -19.69 -0.10 -4.16 15 12 C 0.16 4.42 10.99 84.71 0.93 5.35 15 13 N -0.50 -12.86 10.44 -200.04 -2.09 -14.95 15 14 C 0.29 6.87 12.29 180.88 2.22 9.09 15 15 N -0.50 -14.95 9.88 -188.08 -1.86 -16.81 15 16 C 0.07 2.25 6.29 42.56 0.27 2.52 15 17 C 0.52 18.37 2.83 71.24 0.20 18.57 15 18 F -0.17 -5.61 16.90 44.97 0.76 -4.85 15 19 F -0.16 -6.73 13.36 44.97 0.60 -6.13 15 20 F -0.17 -5.61 15.84 44.97 0.71 -4.90 15 21 H 0.26 14.80 8.31 -92.71 -0.77 14.03 15 22 H 0.02 1.15 5.09 -2.39 -0.01 1.13 15 23 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 15 24 H 0.10 3.20 8.07 -2.39 -0.02 3.18 15 25 H 0.07 2.65 6.14 -2.39 -0.01 2.64 15 26 H 0.21 4.34 8.06 -2.91 -0.02 4.32 15 27 H 0.25 3.50 8.06 -2.91 -0.02 3.48 15 Total: -1.00 -64.30 251.59 6.15 -58.15 By element: Atomic # 1 Polarization: -3.29 SS G_CDS: 1.22 Total: -2.07 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: 4.49 Total: 1.71 kcal Atomic # 7 Polarization: -83.50 SS G_CDS: -3.66 Total: -87.16 kcal Atomic # 9 Polarization: -17.95 SS G_CDS: 2.07 Total: -15.88 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.25 kcal Total: -64.30 6.15 -58.15 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260521376.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.593 kcal (2) G-P(sol) polarization free energy of solvation -64.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds