Wall clock time and date at job start Mon Mar 30 2020 06:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30691 * 1 3 3 Si 1.86800 * 119.99974 * 2 1 4 4 H 1.48495 * 109.47140 * 264.67773 * 3 2 1 5 5 H 1.48501 * 109.47156 * 24.67766 * 3 2 1 6 6 H 1.48496 * 109.46674 * 144.67749 * 3 2 1 7 7 C 1.40235 * 119.99637 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00275 * 6.25988 * 7 2 1 9 9 C 1.39998 * 119.99455 * 186.27150 * 7 2 1 10 10 N 1.32981 * 125.96623 * 36.38762 * 9 7 2 11 11 C 1.32766 * 109.22043 * 179.74994 * 10 9 7 12 12 C 1.36210 * 108.62236 * 0.44170 * 11 10 9 13 13 C 1.50700 * 126.40149 * 179.83361 * 12 11 10 14 14 F 1.39905 * 109.46706 * 269.68014 * 13 12 11 15 15 F 1.39901 * 109.47016 * 149.68648 * 13 12 11 16 16 F 1.39896 * 109.47733 * 29.68223 * 13 12 11 17 17 N 1.36424 * 107.19352 * 359.56223 * 12 11 10 18 18 C 1.46501 * 126.55284 * 180.29675 * 17 12 11 19 19 C 1.52997 * 117.49670 * 196.73477 * 18 17 12 20 20 C 1.52999 * 117.49312 * 128.07842 * 18 17 12 21 21 H 0.97006 * 120.00080 * 359.97438 * 1 2 3 22 22 H 1.08003 * 125.68675 * 180.26704 * 11 10 9 23 23 H 1.08996 * 115.55386 * 342.40948 * 18 17 12 24 24 H 1.09005 * 117.50140 * 0.02562 * 19 18 17 25 25 H 1.08993 * 117.49846 * 145.02198 * 19 18 17 26 26 H 1.09006 * 117.49847 * 214.97806 * 20 18 17 27 27 H 1.09007 * 117.50245 * 359.97217 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 2.6009 1.9815 -1.3940 5 1 1.3866 2.6825 0.5846 6 1 3.4776 1.4752 0.8095 7 6 2.0080 -1.2145 -0.0005 8 1 1.4728 -2.1470 -0.1029 9 6 3.4017 -1.2182 0.1319 10 7 4.1165 -0.3902 0.8882 11 6 5.4040 -0.6920 0.7701 12 6 5.5282 -1.7379 -0.0936 13 6 6.8140 -2.3994 -0.5180 14 9 7.3098 -1.7642 -1.6617 15 9 6.5732 -3.7481 -0.8012 16 9 7.7527 -2.3001 0.5146 17 7 4.2706 -2.0785 -0.4979 18 6 3.9138 -3.1553 -1.4250 19 6 2.5141 -3.1215 -2.0418 20 6 2.8529 -4.1584 -0.9679 21 1 -0.4850 0.8401 0.0004 22 1 6.2175 -0.1899 1.2728 23 1 4.7279 -3.5311 -2.0447 24 1 1.8587 -2.2980 -1.7581 25 1 2.4072 -3.4755 -3.0671 26 1 2.9688 -5.1942 -1.2872 27 1 2.4206 -4.0175 0.0229 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260617422.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:22 Heat of formation + Delta-G solvation = -63.214556 kcal Electronic energy + Delta-G solvation = -18373.622590 eV Core-core repulsion = 14911.678603 eV Total energy + Delta-G solvation = -3461.943987 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.64342 -47.20885 -47.12768 -40.78859 -36.52137 -33.61659 -31.14146 -29.99186 -27.05319 -23.80082 -22.50730 -21.89872 -20.56274 -19.52154 -18.09545 -18.00226 -17.48138 -16.68967 -15.45327 -14.99424 -14.28944 -14.16399 -13.96391 -13.78964 -13.66699 -13.47289 -13.33878 -13.14771 -12.74103 -12.31533 -12.01692 -11.39590 -11.17531 -11.08421 -10.86809 -10.37549 -10.16574 -10.00231 -9.39790 -8.50823 -7.99104 -7.62267 -6.88878 -4.76459 2.58300 3.11772 3.19767 3.31548 3.59317 3.66857 4.03740 4.30312 4.38230 4.48365 4.68738 4.94925 5.00946 5.23040 5.31249 5.48238 5.81637 6.02204 6.09551 6.36623 6.47285 6.80110 6.93090 7.18493 7.56423 7.73999 8.06109 8.49176 8.70671 9.27127 10.08694 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.026938 B = 0.010264 C = 0.008177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.181697 B = 2727.293075 C = 3423.383373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.111 3.889 3 Si 0.863 3.137 4 H -0.280 1.280 5 H -0.289 1.289 6 H -0.171 1.171 7 C -0.460 4.460 8 H 0.109 0.891 9 C 0.390 3.610 10 N -0.551 5.551 11 C 0.074 3.926 12 C -0.231 4.231 13 C 0.554 3.446 14 F -0.187 7.187 15 F -0.189 7.189 16 F -0.179 7.179 17 N -0.446 5.446 18 C 0.069 3.931 19 C -0.189 4.189 20 C -0.186 4.186 21 H 0.288 0.712 22 H 0.156 0.844 23 H 0.123 0.877 24 H 0.148 0.852 25 H 0.091 0.909 26 H 0.094 0.906 27 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.204 -3.972 -2.813 8.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.111 4.111 3 Si 0.687 3.313 4 H -0.205 1.205 5 H -0.216 1.216 6 H -0.092 1.092 7 C -0.498 4.498 8 H 0.126 0.874 9 C 0.149 3.851 10 N -0.273 5.273 11 C -0.084 4.084 12 C -0.343 4.343 13 C 0.498 3.502 14 F -0.168 7.168 15 F -0.171 7.171 16 F -0.161 7.161 17 N -0.132 5.132 18 C -0.037 4.037 19 C -0.226 4.226 20 C -0.225 4.225 21 H 0.098 0.902 22 H 0.173 0.827 23 H 0.141 0.859 24 H 0.165 0.835 25 H 0.110 0.890 26 H 0.112 0.888 27 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 6.697 -3.414 -2.427 7.900 hybrid contribution 0.807 -0.247 -0.709 1.102 sum 7.504 -3.661 -3.137 8.919 Atomic orbital electron populations 1.69499 1.07982 1.30554 1.35757 1.25734 0.94639 1.01266 0.89442 0.87028 0.84916 0.78595 0.80803 1.20543 1.21567 1.09232 1.18132 0.85652 0.96394 1.49637 0.87360 1.20419 0.92119 0.84095 0.88469 1.71453 1.01914 1.27910 1.26026 1.21971 0.95860 0.93947 0.96639 1.20156 0.84704 1.10249 1.19176 1.17254 0.83541 0.75223 0.74140 1.93183 1.89290 1.82107 1.52238 1.93118 1.94449 1.35786 1.93742 1.93136 1.67744 1.95957 1.59259 1.44775 1.04018 1.28706 1.35738 1.21597 0.93909 0.91739 0.96441 1.23967 0.98009 1.03349 0.97293 1.23324 1.03104 0.95042 1.00989 0.90199 0.82655 0.85915 0.83451 0.89023 0.88757 0.87995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.85 13.92 55.56 0.77 -20.08 15 2 C 0.11 2.83 5.52 -17.29 -0.10 2.73 15 3 Si 0.86 19.99 27.32 -169.99 -4.64 15.35 15 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 15 6 H -0.17 -4.04 5.06 56.52 0.29 -3.76 15 7 C -0.46 -11.64 7.21 -38.17 -0.28 -11.91 15 8 H 0.11 2.76 5.40 -52.49 -0.28 2.48 15 9 C 0.39 9.61 6.39 -155.60 -0.99 8.61 15 10 N -0.55 -13.55 7.28 -12.72 -0.09 -13.64 15 11 C 0.07 1.61 11.46 -17.88 -0.20 1.40 15 12 C -0.23 -4.91 6.42 -81.28 -0.52 -5.44 15 13 C 0.55 10.19 3.44 36.01 0.12 10.32 15 14 F -0.19 -3.37 17.30 2.25 0.04 -3.33 15 15 F -0.19 -3.37 15.12 2.25 0.03 -3.34 15 16 F -0.18 -3.10 17.04 2.25 0.04 -3.07 15 17 N -0.45 -9.94 3.16 -104.36 -0.33 -10.27 15 18 C 0.07 1.30 6.07 -67.93 -0.41 0.89 15 19 C -0.19 -3.38 9.56 -26.70 -0.26 -3.63 15 20 C -0.19 -3.20 9.83 -26.69 -0.26 -3.46 15 21 H 0.29 6.83 8.29 -40.82 -0.34 6.49 15 22 H 0.16 2.87 8.06 -52.48 -0.42 2.45 15 23 H 0.12 2.13 6.81 -51.93 -0.35 1.78 15 24 H 0.15 3.11 4.69 -51.93 -0.24 2.87 15 25 H 0.09 1.37 8.14 -51.93 -0.42 0.94 15 26 H 0.09 1.34 8.14 -51.93 -0.42 0.92 15 27 H 0.10 1.95 7.37 -51.93 -0.38 1.56 15 LS Contribution 243.20 15.07 3.67 3.67 Total: -1.00 -26.64 243.20 -5.19 -31.83 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -1.78 Total: 3.38 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: -2.90 Total: -0.50 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: 0.35 Total: -43.99 kcal Atomic # 9 Polarization: -9.85 SS G_CDS: 0.11 Total: -9.74 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -4.64 Total: 15.35 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -26.64 -5.19 -31.83 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260617422.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.383 kcal (2) G-P(sol) polarization free energy of solvation -26.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds