Wall clock time and date at job start Mon Mar 30 2020 06:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86794 * 120.00017 * 2 1 4 4 H 1.48506 * 109.47292 * 270.00072 * 3 2 1 5 5 H 1.48497 * 109.47342 * 29.99525 * 3 2 1 6 6 H 1.48502 * 109.47128 * 150.00199 * 3 2 1 7 7 C 1.37871 * 119.99555 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00558 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99570 * 180.02562 * 7 2 1 10 10 F 1.39897 * 109.47217 * 60.00047 * 9 7 2 11 11 F 1.39896 * 109.47095 * 299.99894 * 9 7 2 12 12 C 1.53008 * 109.47034 * 180.02562 * 9 7 2 13 13 O 1.42895 * 109.47006 * 59.99648 * 12 9 7 14 14 C 1.35951 * 116.99758 * 179.97438 * 13 12 9 15 15 C 1.38708 * 120.03040 * 0.28885 * 14 13 12 16 16 C 1.38147 * 119.96935 * 180.25012 * 15 14 13 17 17 C 1.38455 * 120.02958 * 359.46222 * 16 15 14 18 18 F 1.35101 * 119.97206 * 180.29906 * 17 16 15 19 19 C 1.38452 * 120.06193 * 0.28172 * 17 16 15 20 20 C 1.38156 * 120.03063 * 359.97438 * 19 17 16 21 21 H 0.97006 * 119.99727 * 0.02562 * 1 2 3 22 22 H 1.09005 * 109.46539 * 300.00135 * 12 9 7 23 23 H 1.08995 * 109.46786 * 180.02562 * 12 9 7 24 24 H 1.07998 * 120.01328 * 0.02562 * 15 14 13 25 25 H 1.08002 * 119.98838 * 179.74746 * 16 15 14 26 26 H 1.07997 * 119.98751 * 179.97438 * 19 17 16 27 27 H 1.07999 * 120.02057 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 9 3.9774 -0.5343 1.1434 11 9 3.9782 -0.5349 -1.1411 12 6 4.0215 -2.6366 0.0010 13 8 3.5455 -3.3100 -1.1660 14 6 3.9113 -4.6102 -1.3207 15 6 4.7067 -5.2259 -0.3655 16 6 5.0819 -6.5456 -0.5265 17 6 4.6552 -7.2570 -1.6351 18 9 5.0179 -8.5494 -1.7883 19 6 3.8569 -6.6453 -2.5866 20 6 3.4845 -5.3240 -2.4308 21 1 -0.4850 0.8401 -0.0004 22 1 3.6577 -3.1506 0.8908 23 1 5.1114 -2.6366 0.0019 24 1 5.0354 -4.6727 0.5018 25 1 5.7045 -7.0241 0.2150 26 1 3.5251 -7.2012 -3.4511 27 1 2.8615 -4.8471 -3.1730 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260621397.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:37 Heat of formation + Delta-G solvation = -169.367246 kcal Electronic energy + Delta-G solvation = -17420.676222 eV Core-core repulsion = 13921.836358 eV Total energy + Delta-G solvation = -3498.839864 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.80449 -49.69035 -47.57409 -41.06866 -38.26283 -35.03772 -32.45227 -31.84237 -29.98025 -27.80173 -24.36697 -23.42892 -22.42338 -19.90118 -19.38870 -18.52837 -18.15974 -17.71352 -17.27066 -16.75542 -16.60381 -16.31114 -15.68087 -15.55638 -14.88981 -14.81693 -14.62472 -14.50433 -13.99745 -13.96555 -13.62369 -13.46450 -13.06265 -12.85238 -12.64914 -11.96465 -11.85452 -11.58578 -11.14427 -11.01414 -10.18401 -9.11545 -8.59714 -6.86740 0.16516 0.20252 1.29749 1.31119 1.44130 1.93438 2.18322 2.56888 2.77285 3.13730 3.32855 3.67292 3.77547 3.82269 3.93448 4.14670 4.19043 4.33686 4.53132 4.81664 4.88272 4.94110 5.10287 5.13735 5.25247 5.72063 5.86035 6.31679 6.36520 6.94130 8.53068 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.048505 B = 0.005598 C = 0.005353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.122605 B = 5000.362324 C = 5229.943661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.047 3.953 3 Si 0.929 3.071 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.236 1.236 7 C -0.584 4.584 8 H 0.074 0.926 9 C 0.360 3.640 10 F -0.214 7.214 11 F -0.225 7.225 12 C 0.051 3.949 13 O -0.310 6.310 14 C 0.104 3.896 15 C -0.186 4.186 16 C -0.106 4.106 17 C 0.041 3.959 18 F -0.146 7.146 19 C -0.106 4.106 20 C -0.136 4.136 21 H 0.278 0.722 22 H 0.099 0.901 23 H 0.098 0.902 24 H 0.154 0.846 25 H 0.163 0.837 26 H 0.165 0.835 27 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.521 -10.928 -1.497 15.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.158 4.158 3 Si 0.752 3.248 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.159 1.159 7 C -0.621 4.621 8 H 0.092 0.908 9 C 0.324 3.676 10 F -0.195 7.195 11 F -0.207 7.207 12 C -0.025 4.025 13 O -0.223 6.223 14 C 0.058 3.942 15 C -0.205 4.205 16 C -0.125 4.125 17 C 0.022 3.978 18 F -0.124 7.124 19 C -0.124 4.124 20 C -0.154 4.154 21 H 0.088 0.912 22 H 0.117 0.883 23 H 0.116 0.884 24 H 0.171 0.829 25 H 0.180 0.820 26 H 0.182 0.818 27 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 10.263 -10.718 -1.612 14.927 hybrid contribution 0.030 0.776 0.077 0.780 sum 10.293 -9.942 -1.535 14.392 Atomic orbital electron populations 1.69976 1.07717 1.29326 1.46950 1.25742 0.95765 1.03071 0.91225 0.86198 0.80574 0.78742 0.79287 1.19893 1.20483 1.15903 1.21406 0.88289 0.95814 1.56558 0.90820 1.18866 0.92670 0.85659 0.70386 1.92905 1.90939 1.83045 1.52660 1.92803 1.90755 1.83774 1.53341 1.23345 0.99739 0.90602 0.88791 1.86183 1.70880 1.22115 1.43127 1.19527 0.95212 0.83623 0.95801 1.21362 1.02038 0.96306 1.00792 1.21161 1.00316 0.93672 0.97348 1.17721 1.02443 0.79530 0.98121 1.91470 1.90564 1.34559 1.95854 1.21136 0.97442 0.94029 0.99832 1.20496 1.03320 0.93833 0.97773 0.91211 0.88285 0.88441 0.82865 0.81981 0.81771 0.83841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.22 13.96 21.45 0.30 -53.92 15 2 C 0.05 2.70 5.47 84.65 0.46 3.16 15 3 Si 0.93 44.99 25.99 68.60 1.78 46.77 15 4 H -0.27 -13.14 7.11 99.48 0.71 -12.43 15 5 H -0.28 -12.87 7.11 99.48 0.71 -12.16 15 6 H -0.24 -11.03 5.49 99.48 0.55 -10.48 15 7 C -0.58 -32.65 8.87 25.60 0.23 -32.43 15 8 H 0.07 4.43 7.94 -2.91 -0.02 4.41 15 9 C 0.36 16.97 1.52 29.85 0.05 17.01 15 10 F -0.21 -9.86 14.19 44.97 0.64 -9.22 15 11 F -0.23 -10.96 14.96 44.97 0.67 -10.29 15 12 C 0.05 1.89 4.33 71.98 0.31 2.20 15 13 O -0.31 -12.08 9.67 -92.99 -0.90 -12.98 15 14 C 0.10 3.25 6.69 22.50 0.15 3.40 15 15 C -0.19 -4.70 9.04 22.36 0.20 -4.49 15 16 C -0.11 -2.32 10.02 22.30 0.22 -2.10 15 17 C 0.04 0.95 7.30 22.37 0.16 1.12 15 18 F -0.15 -3.38 17.27 44.97 0.78 -2.60 15 19 C -0.11 -2.41 10.02 22.30 0.22 -2.19 15 20 C -0.14 -3.74 9.99 22.36 0.22 -3.51 15 21 H 0.28 15.43 8.31 -92.70 -0.77 14.66 15 22 H 0.10 3.30 7.65 -2.38 -0.02 3.28 15 23 H 0.10 2.88 7.67 -2.39 -0.02 2.86 15 24 H 0.15 3.29 6.30 -2.91 -0.02 3.28 15 25 H 0.16 2.59 8.06 -2.91 -0.02 2.57 15 26 H 0.16 2.80 8.06 -2.91 -0.02 2.78 15 27 H 0.14 3.82 8.06 -2.91 -0.02 3.80 15 Total: -1.00 -64.07 251.02 6.54 -57.53 By element: Atomic # 1 Polarization: 1.51 SS G_CDS: 1.04 Total: 2.55 kcal Atomic # 6 Polarization: -20.06 SS G_CDS: 2.23 Total: -17.83 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: 0.30 Total: -53.92 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: -0.90 Total: -12.98 kcal Atomic # 9 Polarization: -24.20 SS G_CDS: 2.09 Total: -22.11 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.78 Total: 46.77 kcal Total: -64.07 6.54 -57.53 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260621397.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.841 kcal (2) G-P(sol) polarization free energy of solvation -64.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds