Wall clock time and date at job start Mon Mar 30 2020 06:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31525 * 1 3 3 Si 1.86793 * 120.00046 * 2 1 4 4 H 1.48494 * 109.47274 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47232 * 30.00059 * 3 2 1 6 6 H 1.48509 * 109.47103 * 149.99736 * 3 2 1 7 7 C 1.37873 * 119.99314 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00851 * 359.97438 * 7 2 1 9 9 C 1.50708 * 119.99667 * 180.02562 * 7 2 1 10 10 F 1.39897 * 109.47179 * 59.99725 * 9 7 2 11 11 F 1.39905 * 109.46811 * 300.00003 * 9 7 2 12 12 C 1.52997 * 109.47141 * 180.02562 * 9 7 2 13 13 O 1.42898 * 109.47319 * 59.99977 * 12 9 7 14 14 C 1.35897 * 117.00481 * 180.02562 * 13 12 9 15 15 C 1.38774 * 120.03441 * 359.72088 * 14 13 12 16 16 C 1.38138 * 119.99122 * 179.74971 * 15 14 13 17 17 C 1.38257 * 120.07872 * 0.53010 * 16 15 14 18 18 C 1.38476 * 120.08328 * 359.74048 * 17 16 15 19 19 F 1.35105 * 119.99874 * 179.97438 * 18 17 16 20 20 C 1.38392 * 120.00736 * 359.97438 * 18 17 16 21 21 H 0.96999 * 119.99585 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.47153 * 299.99670 * 12 9 7 23 23 H 1.09001 * 109.46832 * 179.97438 * 12 9 7 24 24 H 1.07996 * 120.00577 * 0.02562 * 15 14 13 25 25 H 1.07993 * 119.96226 * 180.27412 * 16 15 14 26 26 H 1.07999 * 119.95967 * 179.77480 * 17 16 15 27 27 H 1.07997 * 120.03638 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5116 -1.1942 0.0011 10 9 3.9775 -0.5344 1.1434 11 9 3.9783 -0.5349 -1.1412 12 6 4.0215 -2.6367 0.0010 13 8 3.5456 -3.3101 -1.1661 14 6 3.9102 -4.6101 -1.3202 15 6 4.7147 -5.2232 -0.3701 16 6 5.0806 -6.5462 -0.5250 17 6 4.6553 -7.2577 -1.6315 18 6 3.8570 -6.6475 -2.5844 19 9 3.4428 -7.3443 -3.6652 20 6 3.4835 -5.3240 -2.4297 21 1 -0.4849 0.8401 -0.0004 22 1 3.6578 -3.1507 0.8908 23 1 5.1115 -2.6367 0.0010 24 1 5.0511 -4.6673 0.4926 25 1 5.7030 -7.0241 0.2169 26 1 4.9455 -8.2909 -1.7525 27 1 2.8606 -4.8477 -3.1724 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260654544.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:31 Heat of formation + Delta-G solvation = -151.141536 kcal Electronic energy + Delta-G solvation = -17469.283134 eV Core-core repulsion = 13971.233596 eV Total energy + Delta-G solvation = -3498.049538 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.89335 -47.78032 -45.65907 -39.87845 -37.10494 -32.90881 -31.18440 -30.13375 -29.07915 -25.95430 -22.93019 -22.45416 -20.74919 -18.53605 -17.71429 -16.77327 -16.35032 -16.19918 -15.75461 -15.59776 -15.43870 -14.99164 -14.76106 -13.89581 -13.62835 -13.46757 -12.83842 -12.65351 -12.52392 -12.19265 -12.07145 -11.84545 -11.52794 -11.05308 -10.86907 -10.72404 -10.56068 -9.55778 -9.25477 -8.89345 -8.86170 -8.19217 -6.42019 -4.65845 1.14901 1.34209 3.14825 3.31027 3.33860 3.44742 3.62766 4.25464 4.34750 4.67632 4.88215 4.94197 5.00211 5.04330 5.26836 5.32755 5.39019 5.50378 5.88988 5.95117 6.09802 6.25488 6.34394 6.64310 6.77200 6.84529 7.55371 8.00815 8.56933 9.12375 10.66745 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.039588 B = 0.006014 C = 0.005615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.116427 B = 4654.977580 C = 4985.342684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.097 3.903 3 Si 0.880 3.120 4 H -0.274 1.274 5 H -0.290 1.290 6 H -0.245 1.245 7 C -0.576 4.576 8 H 0.101 0.899 9 C 0.367 3.633 10 F -0.216 7.216 11 F -0.220 7.220 12 C 0.044 3.956 13 O -0.275 6.275 14 C 0.172 3.828 15 C -0.225 4.225 16 C -0.051 4.051 17 C -0.203 4.203 18 C 0.137 3.863 19 F -0.138 7.138 20 C -0.191 4.191 21 H 0.273 0.727 22 H 0.087 0.913 23 H 0.065 0.935 24 H 0.135 0.865 25 H 0.133 0.867 26 H 0.133 0.867 27 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.630 -10.739 -0.763 14.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.112 4.112 3 Si 0.706 3.294 4 H -0.199 1.199 5 H -0.217 1.217 6 H -0.168 1.168 7 C -0.613 4.613 8 H 0.119 0.881 9 C 0.331 3.669 10 F -0.197 7.197 11 F -0.201 7.201 12 C -0.032 4.032 13 O -0.187 6.187 14 C 0.124 3.876 15 C -0.244 4.244 16 C -0.069 4.069 17 C -0.222 4.222 18 C 0.117 3.883 19 F -0.116 7.116 20 C -0.211 4.211 21 H 0.083 0.917 22 H 0.105 0.895 23 H 0.083 0.917 24 H 0.153 0.847 25 H 0.151 0.849 26 H 0.150 0.850 27 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 9.330 -10.483 -0.920 14.064 hybrid contribution 0.399 0.800 -0.033 0.895 sum 9.729 -9.683 -0.953 13.759 Atomic orbital electron populations 1.69891 1.06396 1.28246 1.45285 1.24954 0.95052 0.99874 0.91312 0.86971 0.81233 0.82030 0.79187 1.19938 1.21693 1.16794 1.21196 0.85789 0.96941 1.57350 0.88081 1.18810 0.94465 0.82798 0.70830 1.92929 1.91240 1.82668 1.52849 1.92835 1.90961 1.83325 1.52983 1.23535 0.98039 0.93721 0.87925 1.86251 1.69449 1.19997 1.42980 1.18795 0.91548 0.84357 0.92861 1.21407 1.04405 0.97001 1.01588 1.20731 0.96962 0.93083 0.96132 1.20948 1.03650 1.01469 0.96157 1.17267 0.96815 0.89478 0.84717 1.91497 1.88644 1.78620 1.52863 1.20295 1.07280 0.93115 1.00393 0.91681 0.89462 0.91732 0.84699 0.84912 0.84956 0.83676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.62 13.96 55.43 0.77 -24.84 15 2 C 0.10 2.78 5.47 -17.82 -0.10 2.68 15 3 Si 0.88 22.14 25.99 -169.99 -4.42 17.72 15 4 H -0.27 -6.89 7.11 56.52 0.40 -6.49 15 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 15 6 H -0.24 -6.03 5.49 56.52 0.31 -5.72 15 7 C -0.58 -16.02 8.87 -34.44 -0.31 -16.32 15 8 H 0.10 2.96 7.94 -52.49 -0.42 2.54 15 9 C 0.37 8.84 1.52 -27.88 -0.04 8.80 15 10 F -0.22 -5.14 14.19 2.25 0.03 -5.11 15 11 F -0.22 -5.49 14.97 2.25 0.03 -5.45 15 12 C 0.04 0.85 4.33 37.16 0.16 1.01 15 13 O -0.28 -5.51 9.67 -19.42 -0.19 -5.70 15 14 C 0.17 2.84 6.68 -39.23 -0.26 2.58 15 15 C -0.23 -3.05 9.04 -39.42 -0.36 -3.40 15 16 C -0.05 -0.57 10.04 -39.61 -0.40 -0.97 15 17 C -0.20 -2.38 10.02 -39.49 -0.40 -2.78 15 18 C 0.14 1.89 7.30 -39.44 -0.29 1.61 15 19 F -0.14 -1.91 17.27 2.25 0.04 -1.87 15 20 C -0.19 -2.98 9.97 -39.37 -0.39 -3.37 15 21 H 0.27 7.51 8.31 -40.82 -0.34 7.17 15 22 H 0.09 1.51 7.67 -51.93 -0.40 1.12 15 23 H 0.06 1.04 7.65 -51.93 -0.40 0.64 15 24 H 0.14 1.62 6.30 -52.49 -0.33 1.29 15 25 H 0.13 1.06 8.06 -52.49 -0.42 0.64 15 26 H 0.13 1.22 8.06 -52.49 -0.42 0.80 15 27 H 0.15 2.24 8.06 -52.49 -0.42 1.81 15 LS Contribution 251.02 15.07 3.78 3.78 Total: -1.00 -30.17 251.02 -4.36 -34.53 By element: Atomic # 1 Polarization: -0.83 SS G_CDS: -2.04 Total: -2.87 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: -2.38 Total: -10.18 kcal Atomic # 7 Polarization: -25.62 SS G_CDS: 0.77 Total: -24.84 kcal Atomic # 8 Polarization: -5.51 SS G_CDS: -0.19 Total: -5.70 kcal Atomic # 9 Polarization: -12.54 SS G_CDS: 0.10 Total: -12.43 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.42 Total: 17.72 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -30.17 -4.36 -34.53 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260654544.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.615 kcal (2) G-P(sol) polarization free energy of solvation -30.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds