Wall clock time and date at job start Mon Mar 30 2020 06:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31525 * 1 3 3 Si 1.86793 * 120.00046 * 2 1 4 4 H 1.48494 * 109.47274 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47232 * 30.00059 * 3 2 1 6 6 H 1.48509 * 109.47103 * 149.99736 * 3 2 1 7 7 C 1.37873 * 119.99314 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00851 * 359.97438 * 7 2 1 9 9 C 1.50708 * 119.99667 * 180.02562 * 7 2 1 10 10 F 1.39897 * 109.47179 * 59.99725 * 9 7 2 11 11 F 1.39905 * 109.46811 * 300.00003 * 9 7 2 12 12 C 1.52997 * 109.47141 * 180.02562 * 9 7 2 13 13 O 1.42898 * 109.47319 * 59.99977 * 12 9 7 14 14 C 1.35897 * 117.00481 * 180.02562 * 13 12 9 15 15 C 1.38774 * 120.03441 * 359.72088 * 14 13 12 16 16 C 1.38138 * 119.99122 * 179.74971 * 15 14 13 17 17 C 1.38257 * 120.07872 * 0.53010 * 16 15 14 18 18 C 1.38476 * 120.08328 * 359.74048 * 17 16 15 19 19 F 1.35105 * 119.99874 * 179.97438 * 18 17 16 20 20 C 1.38392 * 120.00736 * 359.97438 * 18 17 16 21 21 H 0.96999 * 119.99585 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.47153 * 299.99670 * 12 9 7 23 23 H 1.09001 * 109.46832 * 179.97438 * 12 9 7 24 24 H 1.07996 * 120.00577 * 0.02562 * 15 14 13 25 25 H 1.07993 * 119.96226 * 180.27412 * 16 15 14 26 26 H 1.07999 * 119.95967 * 179.77480 * 17 16 15 27 27 H 1.07997 * 120.03638 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5116 -1.1942 0.0011 10 9 3.9775 -0.5344 1.1434 11 9 3.9783 -0.5349 -1.1412 12 6 4.0215 -2.6367 0.0010 13 8 3.5456 -3.3101 -1.1661 14 6 3.9102 -4.6101 -1.3202 15 6 4.7147 -5.2232 -0.3701 16 6 5.0806 -6.5462 -0.5250 17 6 4.6553 -7.2577 -1.6315 18 6 3.8570 -6.6475 -2.5844 19 9 3.4428 -7.3443 -3.6652 20 6 3.4835 -5.3240 -2.4297 21 1 -0.4849 0.8401 -0.0004 22 1 3.6578 -3.1507 0.8908 23 1 5.1115 -2.6367 0.0010 24 1 5.0511 -4.6673 0.4926 25 1 5.7030 -7.0241 0.2169 26 1 4.9455 -8.2909 -1.7525 27 1 2.8606 -4.8477 -3.1724 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260654544.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:30 Heat of formation + Delta-G solvation = -169.699870 kcal Electronic energy + Delta-G solvation = -17470.087883 eV Core-core repulsion = 13971.233596 eV Total energy + Delta-G solvation = -3498.854288 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.96916 -49.70345 -47.58673 -41.09165 -38.29879 -35.05355 -32.48914 -31.40893 -30.41941 -27.83076 -24.10283 -23.71400 -22.36343 -19.96812 -19.56691 -18.27294 -17.98504 -17.40882 -17.16887 -16.86703 -16.76753 -16.55442 -16.32807 -15.58804 -15.00026 -14.82467 -14.69339 -14.62795 -14.01013 -13.70482 -13.56832 -13.20750 -12.89549 -12.83030 -12.63311 -12.13368 -12.01881 -11.60380 -11.15762 -11.02506 -9.92174 -9.32315 -8.60918 -6.88305 0.10333 0.28738 1.28697 1.30208 1.43119 1.83171 2.17314 2.58602 2.75859 3.06657 3.37652 3.68290 3.81040 3.90950 4.00900 4.09556 4.16314 4.28354 4.41602 4.79579 4.87311 5.00543 5.08693 5.22722 5.33216 5.72979 5.84729 6.29211 6.33937 6.92700 8.52025 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.039588 B = 0.006014 C = 0.005615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.116427 B = 4654.977580 C = 4985.342684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.047 3.953 3 Si 0.929 3.071 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.235 1.235 7 C -0.586 4.586 8 H 0.072 0.928 9 C 0.360 3.640 10 F -0.213 7.213 11 F -0.226 7.226 12 C 0.053 3.947 13 O -0.313 6.313 14 C 0.140 3.860 15 C -0.223 4.223 16 C -0.038 4.038 17 C -0.188 4.188 18 C 0.125 3.875 19 F -0.141 7.141 20 C -0.214 4.214 21 H 0.279 0.721 22 H 0.102 0.898 23 H 0.101 0.899 24 H 0.153 0.847 25 H 0.178 0.822 26 H 0.165 0.835 27 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.957 -11.959 0.210 16.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.158 4.158 3 Si 0.753 3.247 4 H -0.200 1.200 5 H -0.204 1.204 6 H -0.157 1.157 7 C -0.622 4.622 8 H 0.090 0.910 9 C 0.324 3.676 10 F -0.194 7.194 11 F -0.207 7.207 12 C -0.023 4.023 13 O -0.226 6.226 14 C 0.094 3.906 15 C -0.241 4.241 16 C -0.056 4.056 17 C -0.207 4.207 18 C 0.106 3.894 19 F -0.120 7.120 20 C -0.233 4.233 21 H 0.088 0.912 22 H 0.120 0.880 23 H 0.119 0.881 24 H 0.171 0.829 25 H 0.195 0.805 26 H 0.183 0.817 27 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 11.665 -11.722 0.055 16.537 hybrid contribution -0.345 1.033 -0.367 1.149 sum 11.320 -10.689 -0.312 15.572 Atomic orbital electron populations 1.69980 1.07763 1.29355 1.46909 1.25755 0.95766 1.03116 0.91160 0.86189 0.80639 0.78660 0.79261 1.20011 1.20378 1.15725 1.21415 0.88370 0.95801 1.56660 0.90973 1.18859 0.92629 0.85696 0.70412 1.92907 1.90914 1.83008 1.52562 1.92806 1.90752 1.83789 1.53391 1.23379 0.99892 0.90492 0.88558 1.86154 1.70910 1.22114 1.43429 1.19019 0.93792 0.83331 0.94463 1.21693 1.03216 0.98144 1.01067 1.21234 0.96044 0.91919 0.96410 1.21389 1.01484 1.02834 0.94977 1.17438 0.97636 0.88930 0.85409 1.91487 1.88830 1.78457 1.53210 1.20350 1.08133 0.94293 1.00542 0.91194 0.87998 0.88126 0.82944 0.80494 0.81707 0.85267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.79 13.96 21.45 0.30 -54.49 15 2 C 0.05 2.73 5.47 84.65 0.46 3.19 15 3 Si 0.93 45.33 25.99 68.60 1.78 47.11 15 4 H -0.27 -13.33 7.11 99.48 0.71 -12.63 15 5 H -0.28 -12.88 7.11 99.48 0.71 -12.17 15 6 H -0.23 -10.97 5.49 99.48 0.55 -10.42 15 7 C -0.59 -33.16 8.87 25.60 0.23 -32.93 15 8 H 0.07 4.41 7.94 -2.91 -0.02 4.38 15 9 C 0.36 17.11 1.52 29.85 0.05 17.16 15 10 F -0.21 -9.79 14.19 44.97 0.64 -9.15 15 11 F -0.23 -11.14 14.97 44.97 0.67 -10.46 15 12 C 0.05 1.95 4.33 71.98 0.31 2.27 15 13 O -0.31 -12.64 9.67 -92.39 -0.89 -13.54 15 14 C 0.14 4.56 6.68 22.50 0.15 4.71 15 15 C -0.22 -5.38 9.04 22.37 0.20 -5.18 15 16 C -0.04 -0.69 10.04 22.25 0.22 -0.47 15 17 C -0.19 -3.72 10.02 22.33 0.22 -3.50 15 18 C 0.13 3.32 7.30 22.36 0.16 3.48 15 19 F -0.14 -3.81 17.27 44.97 0.78 -3.03 15 20 C -0.21 -6.78 9.97 22.41 0.22 -6.55 15 21 H 0.28 15.58 8.31 -92.71 -0.77 14.81 15 22 H 0.10 3.38 7.67 -2.39 -0.02 3.36 15 23 H 0.10 2.96 7.65 -2.39 -0.02 2.94 15 24 H 0.15 3.08 6.30 -2.91 -0.02 3.07 15 25 H 0.18 1.68 8.06 -2.91 -0.02 1.66 15 26 H 0.17 2.21 8.06 -2.91 -0.02 2.18 15 27 H 0.13 4.31 8.06 -2.91 -0.02 4.28 15 Total: -1.00 -66.47 251.02 6.55 -59.92 By element: Atomic # 1 Polarization: 0.43 SS G_CDS: 1.04 Total: 1.47 kcal Atomic # 6 Polarization: -20.05 SS G_CDS: 2.23 Total: -17.82 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: 0.30 Total: -54.49 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: -0.89 Total: -13.54 kcal Atomic # 9 Polarization: -24.73 SS G_CDS: 2.09 Total: -22.65 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 1.78 Total: 47.11 kcal Total: -66.47 6.55 -59.92 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260654544.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.784 kcal (2) G-P(sol) polarization free energy of solvation -66.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds