Wall clock time and date at job start Mon Mar 30 2020 06:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86793 * 120.00121 * 2 1 4 4 H 1.48501 * 109.47053 * 270.00170 * 3 2 1 5 5 H 1.48499 * 109.47155 * 30.00269 * 3 2 1 6 6 H 1.48497 * 109.47065 * 150.00201 * 3 2 1 7 7 C 1.37883 * 119.99727 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99880 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00095 * 0.02562 * 7 2 1 10 10 F 1.39897 * 109.47464 * 59.99740 * 9 7 2 11 11 F 1.39910 * 109.46782 * 299.99867 * 9 7 2 12 12 C 1.53004 * 109.46959 * 180.02562 * 9 7 2 13 13 O 1.42893 * 109.47267 * 59.99874 * 12 9 7 14 14 C 1.35956 * 117.00026 * 179.97438 * 13 12 9 15 15 C 1.38657 * 120.06128 * 359.97438 * 14 13 12 16 16 C 1.38184 * 119.96964 * 180.02562 * 15 14 13 17 17 C 1.38265 * 120.09281 * 359.97438 * 16 15 14 18 18 C 1.38248 * 120.12705 * 0.02562 * 17 16 15 19 19 C 1.38332 * 120.03366 * 359.97438 * 18 17 16 20 20 F 1.35103 * 120.05240 * 180.02562 * 19 18 17 21 21 H 0.96994 * 120.00047 * 359.97438 * 1 2 3 22 22 H 1.08994 * 109.46599 * 299.99347 * 12 9 7 23 23 H 1.09001 * 109.46881 * 180.02562 * 12 9 7 24 24 H 1.08004 * 120.01774 * 0.03769 * 15 14 13 25 25 H 1.08000 * 119.95526 * 180.27319 * 16 15 14 26 26 H 1.08001 * 119.93128 * 179.97438 * 17 16 15 27 27 H 1.07998 * 119.98480 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 9 0.4471 -2.5726 -1.1443 11 9 0.4463 -2.5740 1.1403 12 6 2.2453 -3.6622 -0.0015 13 8 3.0659 -3.5870 1.1659 14 6 4.0090 -4.5540 1.3207 15 6 4.1411 -5.5540 0.3694 16 6 5.0999 -6.5362 0.5289 17 6 5.9284 -6.5230 1.6358 18 6 5.8001 -5.5278 2.5867 19 6 4.8421 -4.5419 2.4323 20 9 4.7167 -3.5689 3.3611 21 1 -0.4850 0.8400 0.0004 22 1 2.8725 -3.6040 -0.8910 23 1 1.7002 -4.6061 -0.0028 24 1 3.4950 -5.5652 -0.4960 25 1 5.2055 -7.3125 -0.2144 26 1 6.6767 -7.2922 1.7580 27 1 6.4488 -5.5194 3.4502 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260664836.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:40 Heat of formation + Delta-G solvation = -162.109062 kcal Electronic energy + Delta-G solvation = -17682.213058 eV Core-core repulsion = 14183.687932 eV Total energy + Delta-G solvation = -3498.525125 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.48910 -46.99601 -45.02663 -39.70016 -37.20881 -32.85488 -30.65422 -30.49373 -28.73128 -25.65292 -22.92645 -22.30026 -20.77380 -18.30726 -17.44962 -16.90589 -16.50263 -15.78539 -15.39371 -15.28335 -14.76691 -14.50936 -14.43679 -14.22401 -13.80080 -13.05521 -12.54397 -12.21671 -11.93014 -11.86949 -11.64966 -11.45719 -11.20181 -11.05447 -11.00037 -10.70967 -10.42157 -10.11596 -8.93985 -8.89119 -8.82962 -7.99983 -6.28084 -4.53717 1.17954 1.36241 3.21831 3.28316 3.32624 3.35280 3.65250 4.23743 4.39456 4.76098 4.84741 5.05484 5.15953 5.22148 5.27130 5.48188 5.53833 5.63915 6.05033 6.10790 6.23587 6.39968 6.47579 6.73668 7.21323 7.40443 7.65193 7.67458 8.55819 9.26481 10.77396 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.029182 B = 0.007104 C = 0.006333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.252497 B = 3940.708555 C = 4420.504099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.084 3.916 3 Si 0.912 3.088 4 H -0.275 1.275 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.585 4.585 8 H 0.082 0.918 9 C 0.404 3.596 10 F -0.214 7.214 11 F -0.215 7.215 12 C 0.034 3.966 13 O -0.273 6.273 14 C 0.110 3.890 15 C -0.190 4.190 16 C -0.090 4.090 17 C -0.142 4.142 18 C -0.119 4.119 19 C 0.065 3.935 20 F -0.130 7.130 21 H 0.270 0.730 22 H 0.081 0.919 23 H 0.060 0.940 24 H 0.138 0.862 25 H 0.129 0.871 26 H 0.130 0.870 27 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.862 -11.250 1.002 14.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.125 4.125 3 Si 0.738 3.262 4 H -0.200 1.200 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.622 4.622 8 H 0.100 0.900 9 C 0.368 3.632 10 F -0.195 7.195 11 F -0.196 7.196 12 C -0.042 4.042 13 O -0.185 6.185 14 C 0.062 3.938 15 C -0.209 4.209 16 C -0.108 4.108 17 C -0.161 4.161 18 C -0.137 4.137 19 C 0.045 3.955 20 F -0.109 7.109 21 H 0.080 0.920 22 H 0.099 0.901 23 H 0.078 0.922 24 H 0.156 0.844 25 H 0.147 0.853 26 H 0.148 0.852 27 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 9.554 -10.922 1.160 14.558 hybrid contribution 0.138 0.824 -0.066 0.839 sum 9.693 -10.097 1.094 14.039 Atomic orbital electron populations 1.70037 1.06304 1.27952 1.44513 1.25131 0.94968 1.00286 0.92114 0.86267 0.79965 0.81506 0.78457 1.20027 1.20648 1.19148 1.21463 0.94097 0.88732 1.57877 0.90033 1.18135 0.80174 0.93733 0.71168 1.92908 1.76688 1.97290 1.52642 1.92910 1.76947 1.97314 1.52459 1.23813 0.93496 0.99705 0.87232 1.86317 1.43771 1.44982 1.43381 1.19286 0.90571 0.90037 0.93927 1.21258 1.02791 0.96354 1.00450 1.20972 0.94472 0.97783 0.97608 1.20825 1.01152 0.99307 0.94798 1.20965 0.97739 0.94082 1.00952 1.17039 0.99476 0.90726 0.88285 1.91522 1.95337 1.60613 1.63394 0.91983 0.90109 0.92156 0.84448 0.85347 0.85246 0.84399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.55 12.62 55.43 0.70 -24.85 15 2 C 0.08 2.40 5.39 -17.81 -0.10 2.31 15 3 Si 0.91 21.48 29.54 -169.99 -5.02 16.45 15 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 15 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 15 7 C -0.58 -16.60 8.27 -34.44 -0.28 -16.89 15 8 H 0.08 2.24 7.70 -52.49 -0.40 1.84 15 9 C 0.40 10.82 1.69 -27.88 -0.05 10.77 15 10 F -0.21 -5.88 16.61 2.25 0.04 -5.84 15 11 F -0.22 -6.25 16.55 2.25 0.04 -6.21 15 12 C 0.03 0.72 4.33 37.16 0.16 0.88 15 13 O -0.27 -5.98 9.53 -19.60 -0.19 -6.17 15 14 C 0.11 1.96 6.69 -39.18 -0.26 1.70 15 15 C -0.19 -2.70 9.04 -39.45 -0.36 -3.06 15 16 C -0.09 -1.02 10.04 -39.59 -0.40 -1.42 15 17 C -0.14 -1.53 10.04 -39.57 -0.40 -1.93 15 18 C -0.12 -1.49 10.02 -39.54 -0.40 -1.89 15 19 C 0.06 1.08 7.31 -39.30 -0.29 0.80 15 20 F -0.13 -2.45 17.11 2.25 0.04 -2.42 15 21 H 0.27 7.49 8.31 -40.82 -0.34 7.15 15 22 H 0.08 1.52 7.66 -51.93 -0.40 1.12 15 23 H 0.06 1.11 7.66 -51.93 -0.40 0.71 15 24 H 0.14 1.78 6.30 -52.48 -0.33 1.45 15 25 H 0.13 1.06 8.06 -52.49 -0.42 0.64 15 26 H 0.13 0.98 8.06 -52.49 -0.42 0.55 15 27 H 0.14 1.37 8.06 -52.49 -0.42 0.95 15 LS Contribution 257.91 15.07 3.89 3.89 Total: -1.00 -32.41 257.91 -4.81 -37.22 By element: Atomic # 1 Polarization: -1.41 SS G_CDS: -1.93 Total: -3.34 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: -2.36 Total: -8.74 kcal Atomic # 7 Polarization: -25.55 SS G_CDS: 0.70 Total: -24.85 kcal Atomic # 8 Polarization: -5.98 SS G_CDS: -0.19 Total: -6.17 kcal Atomic # 9 Polarization: -14.58 SS G_CDS: 0.11 Total: -14.46 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -32.41 -4.81 -37.22 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260664836.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.891 kcal (2) G-P(sol) polarization free energy of solvation -32.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds