Wall clock time and date at job start Mon Mar 30 2020 06:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86793 * 120.00121 * 2 1 4 4 H 1.48501 * 109.47053 * 270.00170 * 3 2 1 5 5 H 1.48499 * 109.47155 * 30.00269 * 3 2 1 6 6 H 1.48497 * 109.47065 * 150.00201 * 3 2 1 7 7 C 1.37883 * 119.99727 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99880 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00095 * 0.02562 * 7 2 1 10 10 F 1.39897 * 109.47464 * 59.99740 * 9 7 2 11 11 F 1.39910 * 109.46782 * 299.99867 * 9 7 2 12 12 C 1.53004 * 109.46959 * 180.02562 * 9 7 2 13 13 O 1.42893 * 109.47267 * 59.99874 * 12 9 7 14 14 C 1.35956 * 117.00026 * 179.97438 * 13 12 9 15 15 C 1.38657 * 120.06128 * 359.97438 * 14 13 12 16 16 C 1.38184 * 119.96964 * 180.02562 * 15 14 13 17 17 C 1.38265 * 120.09281 * 359.97438 * 16 15 14 18 18 C 1.38248 * 120.12705 * 0.02562 * 17 16 15 19 19 C 1.38332 * 120.03366 * 359.97438 * 18 17 16 20 20 F 1.35103 * 120.05240 * 180.02562 * 19 18 17 21 21 H 0.96994 * 120.00047 * 359.97438 * 1 2 3 22 22 H 1.08994 * 109.46599 * 299.99347 * 12 9 7 23 23 H 1.09001 * 109.46881 * 180.02562 * 12 9 7 24 24 H 1.08004 * 120.01774 * 0.03769 * 15 14 13 25 25 H 1.08000 * 119.95526 * 180.27319 * 16 15 14 26 26 H 1.08001 * 119.93128 * 179.97438 * 17 16 15 27 27 H 1.07998 * 119.98480 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 9 0.4471 -2.5726 -1.1443 11 9 0.4463 -2.5740 1.1403 12 6 2.2453 -3.6622 -0.0015 13 8 3.0659 -3.5870 1.1659 14 6 4.0090 -4.5540 1.3207 15 6 4.1411 -5.5540 0.3694 16 6 5.0999 -6.5362 0.5289 17 6 5.9284 -6.5230 1.6358 18 6 5.8001 -5.5278 2.5867 19 6 4.8421 -4.5419 2.4323 20 9 4.7167 -3.5689 3.3611 21 1 -0.4850 0.8400 0.0004 22 1 2.8725 -3.6040 -0.8910 23 1 1.7002 -4.6061 -0.0028 24 1 3.4950 -5.5652 -0.4960 25 1 5.2055 -7.3125 -0.2144 26 1 6.6767 -7.2922 1.7580 27 1 6.4488 -5.5194 3.4502 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260664836.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:40 Heat of formation + Delta-G solvation = -182.452489 kcal Electronic energy + Delta-G solvation = -17683.095215 eV Core-core repulsion = 14183.687932 eV Total energy + Delta-G solvation = -3499.407283 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.79793 -49.14272 -47.20299 -40.96193 -38.43690 -34.99852 -32.07446 -31.63640 -30.17996 -27.60456 -24.28676 -23.41299 -22.51329 -19.78231 -19.34679 -18.31391 -17.84283 -17.47573 -17.05285 -17.01033 -16.47129 -16.14033 -15.80323 -15.66928 -15.32527 -14.39776 -14.14737 -13.97036 -13.68949 -13.64678 -13.52913 -13.10090 -12.86689 -12.68353 -12.32083 -12.25372 -12.13379 -12.04222 -10.97754 -10.95634 -9.92469 -9.20324 -8.43008 -6.77317 0.15072 0.29334 1.35038 1.38217 1.50638 1.90214 2.26609 2.63490 2.90205 3.21261 3.33030 3.80951 3.86284 3.91283 4.04384 4.30604 4.36134 4.42266 4.56464 5.02660 5.09889 5.17338 5.28704 5.31987 5.43494 5.47809 5.76495 6.30315 6.37103 7.07835 8.63798 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.029182 B = 0.007104 C = 0.006333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.252497 B = 3940.708555 C = 4420.504099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.028 3.972 3 Si 0.984 3.016 4 H -0.259 1.259 5 H -0.274 1.274 6 H -0.264 1.264 7 C -0.605 4.605 8 H 0.082 0.918 9 C 0.380 3.620 10 F -0.224 7.224 11 F -0.236 7.236 12 C 0.052 3.948 13 O -0.314 6.314 14 C 0.067 3.933 15 C -0.193 4.193 16 C -0.079 4.079 17 C -0.123 4.123 18 C -0.112 4.112 19 C 0.027 3.973 20 F -0.155 7.155 21 H 0.275 0.725 22 H 0.100 0.900 23 H 0.084 0.916 24 H 0.147 0.853 25 H 0.170 0.830 26 H 0.176 0.824 27 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.344 -12.925 0.454 17.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.177 4.177 3 Si 0.806 3.194 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.189 1.189 7 C -0.642 4.642 8 H 0.100 0.900 9 C 0.345 3.655 10 F -0.205 7.205 11 F -0.218 7.218 12 C -0.025 4.025 13 O -0.228 6.228 14 C 0.021 3.979 15 C -0.212 4.212 16 C -0.097 4.097 17 C -0.141 4.141 18 C -0.130 4.130 19 C 0.007 3.993 20 F -0.134 7.134 21 H 0.084 0.916 22 H 0.118 0.882 23 H 0.102 0.898 24 H 0.164 0.836 25 H 0.187 0.813 26 H 0.193 0.807 27 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 12.050 -12.624 0.607 17.463 hybrid contribution -0.545 1.184 0.123 1.309 sum 11.506 -11.440 0.730 16.242 Atomic orbital electron populations 1.70147 1.08006 1.29177 1.45686 1.26162 0.95881 1.04312 0.91357 0.85173 0.78401 0.76575 0.79247 1.18335 1.19913 1.18850 1.21836 0.94427 0.90071 1.57870 0.89953 1.18622 0.80591 0.96165 0.70163 1.92861 1.77202 1.97486 1.52955 1.92850 1.77738 1.97536 1.53633 1.23447 0.92860 0.97941 0.88204 1.86201 1.45378 1.47530 1.43659 1.19682 0.91132 0.91066 0.96046 1.21504 1.03774 0.96082 0.99806 1.21498 0.92592 0.97187 0.98392 1.21418 1.00787 0.98769 0.93111 1.21370 0.96432 0.92947 1.02276 1.17653 1.01439 0.91923 0.88297 1.91445 1.95711 1.61952 1.64300 0.91614 0.88248 0.89831 0.83572 0.81263 0.80694 0.81789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.82 12.62 21.45 0.27 -54.55 15 2 C 0.03 1.62 5.39 84.66 0.46 2.08 15 3 Si 0.98 44.53 29.54 68.60 2.03 46.56 15 4 H -0.26 -10.97 7.11 99.48 0.71 -10.26 15 5 H -0.27 -11.98 7.11 99.48 0.71 -11.27 15 6 H -0.26 -11.70 7.11 99.48 0.71 -11.00 15 7 C -0.61 -35.22 8.27 25.60 0.21 -35.01 15 8 H 0.08 4.64 7.70 -2.91 -0.02 4.62 15 9 C 0.38 20.97 1.69 29.85 0.05 21.02 15 10 F -0.22 -12.62 16.61 44.97 0.75 -11.87 15 11 F -0.24 -14.29 16.55 44.97 0.74 -13.55 15 12 C 0.05 2.20 4.33 71.98 0.31 2.52 15 13 O -0.31 -14.20 9.53 -93.06 -0.89 -15.09 15 14 C 0.07 2.39 6.69 22.53 0.15 2.54 15 15 C -0.19 -5.10 9.04 22.36 0.20 -4.90 15 16 C -0.08 -1.42 10.04 22.26 0.22 -1.20 15 17 C -0.12 -2.02 10.04 22.28 0.22 -1.80 15 18 C -0.11 -2.51 10.02 22.29 0.22 -2.28 15 19 C 0.03 0.89 7.31 22.45 0.16 1.05 15 20 F -0.16 -6.10 17.11 44.97 0.77 -5.33 15 21 H 0.27 15.55 8.31 -92.71 -0.77 14.78 15 22 H 0.10 3.74 7.66 -2.39 -0.02 3.72 15 23 H 0.08 3.07 7.66 -2.39 -0.02 3.06 15 24 H 0.15 3.48 6.30 -2.91 -0.02 3.46 15 25 H 0.17 1.72 8.06 -2.91 -0.02 1.70 15 26 H 0.18 1.38 8.06 -2.91 -0.02 1.36 15 27 H 0.16 2.72 8.06 -2.91 -0.02 2.69 15 Total: -1.00 -74.05 257.91 7.09 -66.96 By element: Atomic # 1 Polarization: 1.65 SS G_CDS: 1.20 Total: 2.85 kcal Atomic # 6 Polarization: -18.20 SS G_CDS: 2.22 Total: -15.98 kcal Atomic # 7 Polarization: -54.82 SS G_CDS: 0.27 Total: -54.55 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: -0.89 Total: -15.09 kcal Atomic # 9 Polarization: -33.01 SS G_CDS: 2.26 Total: -30.75 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -74.05 7.09 -66.96 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260664836.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.494 kcal (2) G-P(sol) polarization free energy of solvation -74.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds