Wall clock time and date at job start Mon Mar 30 2020 06:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30686 * 1 3 3 Si 1.86796 * 120.00387 * 2 1 4 4 H 1.48505 * 109.47325 * 264.99432 * 3 2 1 5 5 H 1.48504 * 109.47309 * 144.98883 * 3 2 1 6 6 H 1.48504 * 109.47194 * 24.99049 * 3 2 1 7 7 C 1.40240 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99735 * 186.48034 * 7 2 1 9 9 C 1.39994 * 120.00034 * 6.46998 * 7 2 1 10 10 N 1.32984 * 125.96176 * 6.29771 * 9 7 2 11 11 C 1.32759 * 109.22220 * 179.97438 * 10 9 7 12 12 C 1.50706 * 125.68856 * 179.97438 * 11 10 9 13 13 F 1.39908 * 109.46888 * 5.02986 * 12 11 10 14 14 F 1.39902 * 109.46651 * 125.02613 * 12 11 10 15 15 F 1.39894 * 109.47459 * 245.02890 * 12 11 10 16 16 C 1.36214 * 108.62406 * 0.02562 * 11 10 9 17 17 N 1.36424 * 107.18784 * 359.73496 * 16 11 10 18 18 C 1.46503 * 126.55041 * 180.28868 * 17 16 11 19 19 C 1.52997 * 117.50007 * 8.89791 * 18 17 16 20 20 C 1.52996 * 117.50261 * 300.23413 * 18 17 16 21 21 H 0.97006 * 119.99478 * 0.02562 * 1 2 3 22 22 H 1.07995 * 126.40788 * 179.97438 * 16 11 10 23 23 H 1.09000 * 115.54440 * 154.56450 * 18 17 16 24 24 H 1.08991 * 117.50293 * 359.97438 * 19 18 17 25 25 H 1.09012 * 117.49540 * 145.02174 * 19 18 17 26 26 H 1.09002 * 117.50138 * 214.97971 * 20 18 17 27 27 H 1.09008 * 117.49756 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6176 0.0000 4 1 2.5943 1.9853 -1.3948 5 1 3.4816 1.4729 0.8033 6 1 1.3895 2.6809 0.5915 7 6 2.0080 -1.2145 -0.0005 8 1 3.0828 -1.2176 0.1050 9 6 1.3147 -2.4230 -0.1377 10 7 0.0159 -2.5537 -0.3916 11 6 -0.2897 -3.8441 -0.4537 12 6 -1.6599 -4.4113 -0.7218 13 9 -2.5476 -3.3692 -1.0104 14 9 -1.5974 -5.2861 -1.8118 15 9 -2.1068 -5.1050 0.4079 16 6 0.8417 -4.5701 -0.2335 17 7 1.8590 -3.6822 -0.0390 18 6 3.2624 -4.0078 0.2268 19 6 3.6859 -5.4718 0.0910 20 6 3.5716 -4.8331 1.4775 21 1 -0.4850 0.8401 -0.0004 22 1 0.9196 -5.6472 -0.2198 23 1 3.9851 -3.2457 -0.0647 24 1 2.9204 -6.1927 -0.1956 25 1 4.6876 -5.6727 -0.2894 26 1 4.4980 -4.6142 2.0086 27 1 2.7308 -5.1334 2.1029 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260697765.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:17 Heat of formation + Delta-G solvation = -70.677331 kcal Electronic energy + Delta-G solvation = -17881.529924 eV Core-core repulsion = 14419.262327 eV Total energy + Delta-G solvation = -3462.267597 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.20917 -46.80378 -46.64218 -40.39544 -36.59451 -33.50928 -30.94015 -29.19147 -26.38857 -24.52204 -22.23579 -21.98593 -20.12975 -19.21124 -17.65985 -17.62523 -17.32286 -16.45001 -15.21650 -14.84061 -14.76814 -13.81140 -13.59932 -13.44947 -13.21264 -13.11644 -12.88862 -12.87204 -12.73389 -12.46407 -11.43051 -11.37651 -11.26480 -11.19567 -10.61155 -10.57121 -10.43684 -10.16347 -9.32918 -8.23592 -8.17700 -7.43752 -6.55898 -4.48410 2.87754 3.10141 3.12476 3.15265 3.53670 3.82335 4.03024 4.09794 4.28421 4.79968 4.98676 5.10985 5.12729 5.26410 5.35629 5.58172 5.71593 5.84907 6.05466 6.15625 6.28252 6.68325 7.02920 7.30341 7.71517 7.88047 8.16652 8.76697 8.99904 9.81409 10.37820 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.017751 B = 0.010270 C = 0.006910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.022486 B = 2725.833457 C = 4051.258955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.736 5.736 2 C 0.082 3.918 3 Si 0.915 3.085 4 H -0.269 1.269 5 H -0.264 1.264 6 H -0.277 1.277 7 C -0.457 4.457 8 H 0.083 0.917 9 C 0.390 3.610 10 N -0.487 5.487 11 C -0.076 4.076 12 C 0.549 3.451 13 F -0.171 7.171 14 F -0.190 7.190 15 F -0.190 7.190 16 C -0.099 4.099 17 N -0.472 5.472 18 C 0.094 3.906 19 C -0.188 4.188 20 C -0.190 4.190 21 H 0.277 0.723 22 H 0.147 0.853 23 H 0.134 0.866 24 H 0.097 0.903 25 H 0.101 0.899 26 H 0.100 0.900 27 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.395 -6.013 0.565 7.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.360 5.360 2 C -0.143 4.143 3 Si 0.739 3.261 4 H -0.194 1.194 5 H -0.188 1.188 6 H -0.202 1.202 7 C -0.497 4.497 8 H 0.101 0.899 9 C 0.149 3.851 10 N -0.208 5.208 11 C -0.209 4.209 12 C 0.494 3.506 13 F -0.153 7.153 14 F -0.172 7.172 15 F -0.171 7.171 16 C -0.233 4.233 17 N -0.159 5.159 18 C -0.012 4.012 19 C -0.225 4.225 20 C -0.228 4.228 21 H 0.088 0.912 22 H 0.165 0.835 23 H 0.151 0.849 24 H 0.115 0.885 25 H 0.119 0.881 26 H 0.118 0.882 27 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.672 -5.312 0.466 6.474 hybrid contribution 0.709 -0.190 0.099 0.740 sum 4.380 -5.502 0.565 7.055 Atomic orbital electron populations 1.69958 1.07047 1.28391 1.30596 1.25734 0.94796 1.00458 0.93338 0.86235 0.79968 0.80604 0.79268 1.19383 1.18839 1.20203 1.18127 0.94143 0.87456 1.49948 0.89854 1.20196 0.86624 0.83394 0.94869 1.71123 1.11112 1.11618 1.26962 1.20109 0.90754 0.94915 1.15149 1.17398 0.85405 0.74763 0.73020 1.93164 1.70806 1.58023 1.93274 1.93119 1.96812 1.71053 1.56218 1.93125 1.90872 1.80526 1.52621 1.21289 0.88142 0.94555 1.19358 1.44991 1.05034 1.07110 1.58787 1.21534 0.83664 0.94380 1.01605 1.23308 1.02817 0.95868 1.00542 1.23399 1.03445 1.04576 0.91385 0.91186 0.83526 0.84851 0.88454 0.88105 0.88190 0.88528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -20.13 11.96 55.56 0.66 -19.47 15 2 C 0.08 2.08 5.49 -17.29 -0.09 1.99 15 3 Si 0.92 18.49 29.57 -169.99 -5.03 13.46 15 4 H -0.27 -5.38 7.11 56.52 0.40 -4.98 15 5 H -0.26 -5.15 7.11 56.52 0.40 -4.75 15 6 H -0.28 -5.52 7.11 56.52 0.40 -5.12 15 7 C -0.46 -11.88 9.06 -38.17 -0.35 -12.22 15 8 H 0.08 1.96 7.21 -52.49 -0.38 1.58 15 9 C 0.39 10.49 7.40 -155.61 -1.15 9.33 15 10 N -0.49 -13.88 9.26 -8.95 -0.08 -13.97 15 11 C -0.08 -1.90 6.37 -82.92 -0.53 -2.43 15 12 C 0.55 12.32 3.48 36.01 0.13 12.45 15 13 F -0.17 -4.07 17.14 2.25 0.04 -4.03 15 14 F -0.19 -3.90 17.29 2.25 0.04 -3.86 15 15 F -0.19 -3.98 17.30 2.25 0.04 -3.94 15 16 C -0.10 -2.21 10.78 -16.24 -0.18 -2.39 15 17 N -0.47 -10.77 3.14 -108.88 -0.34 -11.11 15 18 C 0.09 1.66 6.57 -67.93 -0.45 1.22 15 19 C -0.19 -2.58 10.00 -26.69 -0.27 -2.85 15 20 C -0.19 -2.76 10.41 -26.69 -0.28 -3.04 15 21 H 0.28 6.90 8.29 -40.82 -0.34 6.57 15 22 H 0.15 2.80 7.13 -52.49 -0.37 2.43 15 23 H 0.13 2.22 7.55 -51.93 -0.39 1.83 15 24 H 0.10 1.37 6.90 -51.93 -0.36 1.01 15 25 H 0.10 1.13 8.14 -51.92 -0.42 0.70 15 26 H 0.10 1.21 8.14 -51.93 -0.42 0.79 15 27 H 0.10 1.52 8.14 -51.92 -0.42 1.09 15 LS Contribution 258.05 15.07 3.89 3.89 Total: -1.00 -29.96 258.05 -5.85 -35.81 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: -1.91 Total: 1.16 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: -3.16 Total: 2.06 kcal Atomic # 7 Polarization: -44.78 SS G_CDS: 0.24 Total: -44.54 kcal Atomic # 9 Polarization: -11.95 SS G_CDS: 0.12 Total: -11.84 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.03 Total: 13.46 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -29.96 -5.85 -35.81 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260697765.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.870 kcal (2) G-P(sol) polarization free energy of solvation -29.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds