Wall clock time and date at job start Mon Mar 30 2020 06:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30686 * 1 3 3 Si 1.86796 * 120.00387 * 2 1 4 4 H 1.48505 * 109.47325 * 264.99432 * 3 2 1 5 5 H 1.48504 * 109.47309 * 144.98883 * 3 2 1 6 6 H 1.48504 * 109.47194 * 24.99049 * 3 2 1 7 7 C 1.40240 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99735 * 186.48034 * 7 2 1 9 9 C 1.39994 * 120.00034 * 6.46998 * 7 2 1 10 10 N 1.32984 * 125.96176 * 6.29771 * 9 7 2 11 11 C 1.32759 * 109.22220 * 179.97438 * 10 9 7 12 12 C 1.50706 * 125.68856 * 179.97438 * 11 10 9 13 13 F 1.39908 * 109.46888 * 5.02986 * 12 11 10 14 14 F 1.39902 * 109.46651 * 125.02613 * 12 11 10 15 15 F 1.39894 * 109.47459 * 245.02890 * 12 11 10 16 16 C 1.36214 * 108.62406 * 0.02562 * 11 10 9 17 17 N 1.36424 * 107.18784 * 359.73496 * 16 11 10 18 18 C 1.46503 * 126.55041 * 180.28868 * 17 16 11 19 19 C 1.52997 * 117.50007 * 8.89791 * 18 17 16 20 20 C 1.52996 * 117.50261 * 300.23413 * 18 17 16 21 21 H 0.97006 * 119.99478 * 0.02562 * 1 2 3 22 22 H 1.07995 * 126.40788 * 179.97438 * 16 11 10 23 23 H 1.09000 * 115.54440 * 154.56450 * 18 17 16 24 24 H 1.08991 * 117.50293 * 359.97438 * 19 18 17 25 25 H 1.09012 * 117.49540 * 145.02174 * 19 18 17 26 26 H 1.09002 * 117.50138 * 214.97971 * 20 18 17 27 27 H 1.09008 * 117.49756 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6176 0.0000 4 1 2.5943 1.9853 -1.3948 5 1 3.4816 1.4729 0.8033 6 1 1.3895 2.6809 0.5915 7 6 2.0080 -1.2145 -0.0005 8 1 3.0828 -1.2176 0.1050 9 6 1.3147 -2.4230 -0.1377 10 7 0.0159 -2.5537 -0.3916 11 6 -0.2897 -3.8441 -0.4537 12 6 -1.6599 -4.4113 -0.7218 13 9 -2.5476 -3.3692 -1.0104 14 9 -1.5974 -5.2861 -1.8118 15 9 -2.1068 -5.1050 0.4079 16 6 0.8417 -4.5701 -0.2335 17 7 1.8590 -3.6822 -0.0390 18 6 3.2624 -4.0078 0.2268 19 6 3.6859 -5.4718 0.0910 20 6 3.5716 -4.8331 1.4775 21 1 -0.4850 0.8401 -0.0004 22 1 0.9196 -5.6472 -0.2198 23 1 3.9851 -3.2457 -0.0647 24 1 2.9204 -6.1927 -0.1956 25 1 4.6876 -5.6727 -0.2894 26 1 4.4980 -4.6142 2.0086 27 1 2.7308 -5.1334 2.1029 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260697765.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:17 Heat of formation + Delta-G solvation = -87.840766 kcal Electronic energy + Delta-G solvation = -17882.274187 eV Core-core repulsion = 14419.262327 eV Total energy + Delta-G solvation = -3463.011859 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -50.97097 -48.51641 -48.45512 -42.18964 -37.94219 -35.38059 -32.66507 -31.07602 -28.25993 -26.26310 -23.61330 -23.34961 -21.97323 -20.88606 -19.39615 -19.37594 -19.02383 -18.32019 -16.86763 -16.55357 -16.09198 -15.52685 -15.36511 -15.16925 -14.95545 -14.79621 -14.66615 -14.66073 -14.47183 -13.91903 -13.12230 -12.96476 -12.88895 -12.47594 -12.42204 -12.03728 -11.94233 -11.50125 -11.14398 -10.08821 -9.91854 -9.34653 -8.41741 -6.42164 1.16116 1.44880 1.52852 1.59536 1.78504 2.17653 2.36222 2.37329 2.86808 3.04215 3.34861 3.42308 3.71220 3.74502 3.99501 4.05803 4.24425 4.67563 4.78362 4.83589 4.97993 5.17423 5.19074 5.45348 5.89990 6.10588 6.29434 6.87716 7.15727 7.93694 8.55266 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.017751 B = 0.010270 C = 0.006910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.022486 B = 2725.833457 C = 4051.258955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.033 3.967 3 Si 0.996 3.004 4 H -0.265 1.265 5 H -0.249 1.249 6 H -0.275 1.275 7 C -0.484 4.484 8 H 0.098 0.902 9 C 0.356 3.644 10 N -0.534 5.534 11 C -0.124 4.124 12 C 0.558 3.442 13 F -0.184 7.184 14 F -0.178 7.178 15 F -0.181 7.181 16 C -0.070 4.070 17 N -0.469 5.469 18 C 0.043 3.957 19 C -0.156 4.156 20 C -0.174 4.174 21 H 0.279 0.721 22 H 0.185 0.815 23 H 0.138 0.862 24 H 0.098 0.902 25 H 0.136 0.864 26 H 0.129 0.871 27 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.660 -7.058 0.859 9.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.187 4.187 3 Si 0.816 3.184 4 H -0.190 1.190 5 H -0.172 1.172 6 H -0.200 1.200 7 C -0.523 4.523 8 H 0.116 0.884 9 C 0.113 3.887 10 N -0.256 5.256 11 C -0.256 4.256 12 C 0.502 3.498 13 F -0.165 7.165 14 F -0.159 7.159 15 F -0.163 7.163 16 C -0.207 4.207 17 N -0.154 5.154 18 C -0.061 4.061 19 C -0.193 4.193 20 C -0.212 4.212 21 H 0.089 0.911 22 H 0.202 0.798 23 H 0.155 0.845 24 H 0.116 0.884 25 H 0.154 0.846 26 H 0.147 0.853 27 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.970 -6.405 0.768 8.789 hybrid contribution 0.051 -0.063 0.023 0.084 sum 6.020 -6.469 0.790 8.872 Atomic orbital electron populations 1.70108 1.09165 1.29435 1.32827 1.26810 0.95507 1.04282 0.92088 0.85020 0.78721 0.75212 0.79421 1.18985 1.17203 1.19983 1.18570 0.94987 0.87950 1.50824 0.88367 1.20508 0.86908 0.85141 0.96163 1.70988 1.12737 1.13758 1.28096 1.20572 0.92664 0.94596 1.17742 1.17132 0.84431 0.74677 0.73513 1.93133 1.71096 1.58872 1.93414 1.93135 1.96720 1.70462 1.55607 1.93134 1.90700 1.80200 1.52229 1.21888 0.87311 0.95994 1.15466 1.45234 1.07122 1.05957 1.57071 1.22011 0.81105 0.97269 1.05668 1.23456 1.04386 0.92303 0.99162 1.23465 1.04089 1.02523 0.91163 0.91088 0.79844 0.84461 0.88398 0.84646 0.85280 0.89852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -44.88 11.96 21.88 0.26 -44.62 15 2 C 0.03 1.71 5.49 85.35 0.47 2.18 15 3 Si 1.00 38.23 29.57 68.60 2.03 40.26 15 4 H -0.26 -9.90 7.11 99.48 0.71 -9.19 15 5 H -0.25 -8.80 7.11 99.48 0.71 -8.09 15 6 H -0.27 -10.31 7.11 99.48 0.71 -9.60 15 7 C -0.48 -25.54 9.06 23.18 0.21 -25.33 15 8 H 0.10 4.63 7.21 -2.91 -0.02 4.61 15 9 C 0.36 19.53 7.40 133.59 0.99 20.52 15 10 N -0.53 -31.36 9.26 -182.22 -1.69 -33.04 15 11 C -0.12 -6.26 6.37 41.95 0.27 -5.99 15 12 C 0.56 25.09 3.48 71.24 0.25 25.33 15 13 F -0.18 -8.95 17.14 44.97 0.77 -8.18 15 14 F -0.18 -7.14 17.29 44.97 0.78 -6.36 15 15 F -0.18 -7.50 17.30 44.97 0.78 -6.72 15 16 C -0.07 -3.07 10.78 83.51 0.90 -2.17 15 17 N -0.47 -21.06 3.14 -498.40 -1.57 -22.62 15 18 C 0.04 1.44 6.57 44.99 0.30 1.74 15 19 C -0.16 -3.63 10.00 30.62 0.31 -3.32 15 20 C -0.17 -4.48 10.41 30.62 0.32 -4.16 15 21 H 0.28 14.51 8.29 -92.70 -0.77 13.74 15 22 H 0.18 6.45 7.13 -2.91 -0.02 6.43 15 23 H 0.14 4.35 7.55 -2.39 -0.02 4.33 15 24 H 0.10 2.31 6.90 -2.39 -0.02 2.30 15 25 H 0.14 2.28 8.14 -2.38 -0.02 2.26 15 26 H 0.13 2.57 8.14 -2.39 -0.02 2.55 15 27 H 0.08 2.40 8.14 -2.38 -0.02 2.38 15 Total: -1.00 -67.39 258.05 6.58 -60.81 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: 1.22 Total: 11.70 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: 4.00 Total: 8.79 kcal Atomic # 7 Polarization: -97.30 SS G_CDS: -2.99 Total: -100.29 kcal Atomic # 9 Polarization: -23.59 SS G_CDS: 2.33 Total: -21.27 kcal Atomic # 14 Polarization: 38.23 SS G_CDS: 2.03 Total: 40.26 kcal Total: -67.39 6.58 -60.81 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260697765.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.036 kcal (2) G-P(sol) polarization free energy of solvation -67.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds