Wall clock time and date at job start Mon Mar 30 2020 06:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46747 * 2 1 4 4 C 1.50699 * 109.47062 * 240.00409 * 2 1 3 5 5 H 1.08002 * 119.99562 * 245.45727 * 4 2 1 6 6 C 1.37871 * 120.00643 * 65.46377 * 4 2 1 7 7 N 1.31516 * 119.99616 * 9.58996 * 6 4 2 8 8 Si 1.86797 * 120.00354 * 189.59747 * 6 4 2 9 9 H 1.48506 * 109.47149 * 84.98925 * 8 6 4 10 10 H 1.48504 * 109.47279 * 204.99088 * 8 6 4 11 11 H 1.48503 * 109.46749 * 324.99248 * 8 6 4 12 12 C 1.50697 * 109.46976 * 119.99755 * 2 1 3 13 13 C 1.38243 * 119.98464 * 60.00434 * 12 2 1 14 14 C 1.38376 * 120.08836 * 179.73940 * 13 12 2 15 15 F 1.35098 * 119.97263 * 180.23002 * 14 13 12 16 16 C 1.38668 * 120.05450 * 0.25904 * 14 13 12 17 17 F 1.35091 * 120.01793 * 179.97438 * 16 14 13 18 18 C 1.38467 * 119.96574 * 359.97438 * 16 14 13 19 19 F 1.35104 * 120.04317 * 180.02562 * 18 16 14 20 20 C 1.38624 * 119.98414 * 240.25391 * 12 2 1 21 21 O 1.35995 * 120.02915 * 359.97438 * 20 12 2 22 22 H 1.08996 * 109.46900 * 183.25831 * 1 2 3 23 23 H 1.08995 * 109.47405 * 303.26135 * 1 2 3 24 24 H 1.09007 * 109.46900 * 63.26355 * 1 2 3 25 25 H 0.96997 * 119.99860 * 180.02562 * 7 6 4 26 26 H 1.08003 * 119.95586 * 0.02562 * 13 12 2 27 27 H 0.96700 * 113.99864 * 270.27696 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.5786 -1.6370 -1.1339 6 6 1.7947 -0.1773 -2.4796 7 7 1.3001 1.0360 -2.5935 8 14 2.1751 -1.1783 -4.0102 9 1 1.0225 -2.0606 -4.3237 10 1 2.4222 -0.2619 -5.1523 11 1 3.3831 -2.0083 -3.7711 12 6 2.0323 -0.7103 1.2305 13 6 1.6982 -2.0339 1.4489 14 6 2.1627 -2.6898 2.5753 15 9 1.8386 -3.9846 2.7842 16 6 2.9601 -2.0190 3.4903 17 9 3.4127 -2.6600 4.5900 18 6 3.2921 -0.6919 3.2762 19 9 4.0693 -0.0370 4.1663 20 6 2.8249 -0.0348 2.1454 21 8 3.1498 1.2686 1.9327 22 1 -0.3633 -1.0260 0.0584 23 1 -0.3634 0.5636 0.8593 24 1 -0.3633 0.4624 -0.9179 25 1 1.1326 1.4109 -3.4723 26 1 1.0776 -2.5580 0.7371 27 1 3.9647 1.3933 1.4273 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260713548.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:01 Heat of formation + Delta-G solvation = -163.670917 kcal Electronic energy + Delta-G solvation = -17773.514175 eV Core-core repulsion = 14274.921322 eV Total energy + Delta-G solvation = -3498.592853 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.45935 -48.87238 -48.15273 -39.41269 -36.24630 -34.39180 -31.53259 -29.31839 -28.20316 -25.28603 -23.47556 -22.72407 -20.31336 -18.57278 -17.87394 -17.49046 -16.76540 -16.32917 -16.15036 -15.54486 -15.22314 -14.78865 -14.70047 -14.44874 -14.09116 -13.61518 -13.40874 -12.81852 -12.28316 -11.91216 -11.60305 -11.43483 -11.02405 -10.80946 -10.76863 -10.42778 -10.36780 -9.67951 -9.26785 -8.52724 -8.49033 -8.16354 -6.21760 -4.26884 1.01620 1.09412 3.20764 3.28445 3.29604 3.43033 3.61651 4.23556 4.28634 4.46080 4.65700 4.96883 5.02902 5.12540 5.68777 5.93303 6.11981 6.28741 6.41685 6.65169 6.77328 6.90436 7.00427 7.49173 7.67088 7.77382 7.85104 8.10827 8.75444 9.38068 10.86374 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.027517 B = 0.007597 C = 0.006678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.318487 B = 3684.675803 C = 4192.144907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.070 3.930 3 H 0.062 0.938 4 C -0.524 4.524 5 H 0.060 0.940 6 C 0.070 3.930 7 N -0.881 5.881 8 Si 0.892 3.108 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.274 1.274 12 C -0.007 4.007 13 C -0.115 4.115 14 C 0.085 3.915 15 F -0.127 7.127 16 C 0.015 3.985 17 F -0.127 7.127 18 C 0.064 3.936 19 F -0.123 7.123 20 C 0.084 3.916 21 O -0.474 6.474 22 H 0.032 0.968 23 H 0.018 0.982 24 H 0.073 0.927 25 H 0.264 0.736 26 H 0.158 0.842 27 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.092 -3.373 7.273 8.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.052 3.948 3 H 0.080 0.920 4 C -0.562 4.562 5 H 0.078 0.922 6 C -0.134 4.134 7 N -0.518 5.518 8 Si 0.719 3.281 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.199 1.199 12 C -0.008 4.008 13 C -0.134 4.134 14 C 0.065 3.935 15 F -0.106 7.106 16 C -0.006 4.006 17 F -0.105 7.105 18 C 0.044 3.956 19 F -0.102 7.102 20 C 0.038 3.962 21 O -0.284 6.284 22 H 0.052 0.948 23 H 0.037 0.963 24 H 0.092 0.908 25 H 0.074 0.926 26 H 0.176 0.824 27 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 1.567 -3.154 7.537 8.319 hybrid contribution 0.856 -0.849 -0.673 1.381 sum 2.422 -4.003 6.864 8.307 Atomic orbital electron populations 1.21760 0.97158 0.99076 1.00585 1.17972 0.92947 0.96995 0.86881 0.92015 1.21022 1.37073 1.08353 0.89718 0.92179 1.24927 0.94863 0.94578 0.99006 1.69958 1.43881 1.13743 1.24205 0.86610 0.78909 0.80121 0.82443 1.20349 1.21188 1.19852 1.20941 0.91910 0.92323 0.95577 1.21064 1.01655 0.95078 0.95607 1.17433 1.00239 0.79710 0.96153 1.91508 1.90981 1.33243 1.94855 1.17213 1.04905 0.90504 0.88016 1.91491 1.87671 1.81110 1.50274 1.17770 0.97353 0.88938 0.91586 1.91494 1.72045 1.80354 1.66259 1.18114 1.00016 0.85446 0.92648 1.84839 1.47541 1.19034 1.76991 0.94839 0.96286 0.90829 0.92600 0.82394 0.74793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.75 8.93 37.16 0.33 -2.41 15 2 C 0.07 1.57 2.30 -92.92 -0.21 1.35 15 3 H 0.06 1.50 6.93 -51.93 -0.36 1.14 15 4 C -0.52 -12.77 8.19 -34.44 -0.28 -13.06 15 5 H 0.06 1.45 7.55 -52.49 -0.40 1.05 15 6 C 0.07 1.75 5.17 -17.82 -0.09 1.66 15 7 N -0.88 -23.24 12.16 55.43 0.67 -22.57 15 8 Si 0.89 19.67 29.55 -169.99 -5.02 14.65 15 9 H -0.28 -6.10 7.11 56.52 0.40 -5.70 15 10 H -0.29 -6.35 7.11 56.52 0.40 -5.94 15 11 H -0.27 -6.00 7.11 56.52 0.40 -5.60 15 12 C -0.01 -0.12 4.76 -104.48 -0.50 -0.62 15 13 C -0.12 -2.02 8.59 -39.53 -0.34 -2.36 15 14 C 0.08 1.43 7.30 -39.37 -0.29 1.14 15 15 F -0.13 -2.09 17.18 2.25 0.04 -2.06 15 16 C 0.01 0.25 7.31 -39.34 -0.29 -0.04 15 17 F -0.13 -2.16 17.09 2.25 0.04 -2.12 15 18 C 0.06 1.11 7.31 -39.26 -0.29 0.82 15 19 F -0.12 -2.10 17.02 2.25 0.04 -2.06 15 20 C 0.08 1.51 6.68 -39.20 -0.26 1.25 15 21 O -0.47 -8.11 12.13 -19.72 -0.24 -8.35 15 22 H 0.03 0.66 7.28 -51.93 -0.38 0.28 15 23 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 15 24 H 0.07 1.74 6.84 -51.93 -0.36 1.39 15 25 H 0.26 6.69 8.31 -40.82 -0.34 6.35 15 26 H 0.16 2.67 7.55 -52.48 -0.40 2.28 15 27 H 0.40 5.18 9.06 45.56 0.41 5.59 15 LS Contribution 254.67 15.07 3.84 3.84 Total: -1.00 -26.26 254.67 -3.88 -30.14 By element: Atomic # 1 Polarization: 1.81 SS G_CDS: -1.03 Total: 0.78 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: -2.22 Total: -12.26 kcal Atomic # 7 Polarization: -23.24 SS G_CDS: 0.67 Total: -22.57 kcal Atomic # 8 Polarization: -8.11 SS G_CDS: -0.24 Total: -8.35 kcal Atomic # 9 Polarization: -6.35 SS G_CDS: 0.12 Total: -6.23 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.65 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -26.26 -3.88 -30.14 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260713548.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.527 kcal (2) G-P(sol) polarization free energy of solvation -26.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds