Wall clock time and date at job start Mon Mar 30 2020 06:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46747 * 2 1 4 4 C 1.50699 * 109.47062 * 240.00409 * 2 1 3 5 5 H 1.08002 * 119.99562 * 245.45727 * 4 2 1 6 6 C 1.37871 * 120.00643 * 65.46377 * 4 2 1 7 7 N 1.31516 * 119.99616 * 9.58996 * 6 4 2 8 8 Si 1.86797 * 120.00354 * 189.59747 * 6 4 2 9 9 H 1.48506 * 109.47149 * 84.98925 * 8 6 4 10 10 H 1.48504 * 109.47279 * 204.99088 * 8 6 4 11 11 H 1.48503 * 109.46749 * 324.99248 * 8 6 4 12 12 C 1.50697 * 109.46976 * 119.99755 * 2 1 3 13 13 C 1.38243 * 119.98464 * 60.00434 * 12 2 1 14 14 C 1.38376 * 120.08836 * 179.73940 * 13 12 2 15 15 F 1.35098 * 119.97263 * 180.23002 * 14 13 12 16 16 C 1.38668 * 120.05450 * 0.25904 * 14 13 12 17 17 F 1.35091 * 120.01793 * 179.97438 * 16 14 13 18 18 C 1.38467 * 119.96574 * 359.97438 * 16 14 13 19 19 F 1.35104 * 120.04317 * 180.02562 * 18 16 14 20 20 C 1.38624 * 119.98414 * 240.25391 * 12 2 1 21 21 O 1.35995 * 120.02915 * 359.97438 * 20 12 2 22 22 H 1.08996 * 109.46900 * 183.25831 * 1 2 3 23 23 H 1.08995 * 109.47405 * 303.26135 * 1 2 3 24 24 H 1.09007 * 109.46900 * 63.26355 * 1 2 3 25 25 H 0.96997 * 119.99860 * 180.02562 * 7 6 4 26 26 H 1.08003 * 119.95586 * 0.02562 * 13 12 2 27 27 H 0.96700 * 113.99864 * 270.27696 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.5786 -1.6370 -1.1339 6 6 1.7947 -0.1773 -2.4796 7 7 1.3001 1.0360 -2.5935 8 14 2.1751 -1.1783 -4.0102 9 1 1.0225 -2.0606 -4.3237 10 1 2.4222 -0.2619 -5.1523 11 1 3.3831 -2.0083 -3.7711 12 6 2.0323 -0.7103 1.2305 13 6 1.6982 -2.0339 1.4489 14 6 2.1627 -2.6898 2.5753 15 9 1.8386 -3.9846 2.7842 16 6 2.9601 -2.0190 3.4903 17 9 3.4127 -2.6600 4.5900 18 6 3.2921 -0.6919 3.2762 19 9 4.0693 -0.0370 4.1663 20 6 2.8249 -0.0348 2.1454 21 8 3.1498 1.2686 1.9327 22 1 -0.3633 -1.0260 0.0584 23 1 -0.3634 0.5636 0.8593 24 1 -0.3633 0.4624 -0.9179 25 1 1.1326 1.4109 -3.4723 26 1 1.0776 -2.5580 0.7371 27 1 3.9647 1.3933 1.4273 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260713548.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:01 Heat of formation + Delta-G solvation = -178.557184 kcal Electronic energy + Delta-G solvation = -17774.159692 eV Core-core repulsion = 14274.921322 eV Total energy + Delta-G solvation = -3499.238370 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -50.82067 -50.22022 -49.50909 -40.84280 -37.63484 -36.11397 -33.29700 -30.73231 -29.73432 -27.15417 -24.98820 -24.13455 -21.93597 -19.94314 -19.31352 -18.93048 -18.22412 -17.86311 -17.67223 -16.98029 -16.61120 -16.49948 -16.07860 -15.81512 -15.45170 -15.14111 -14.88597 -14.47211 -13.85590 -13.62198 -13.20873 -12.93498 -12.75264 -12.44252 -12.28743 -12.19201 -11.99283 -11.33623 -11.05437 -10.43503 -9.88072 -9.61020 -8.12499 -6.21935 -0.35580 -0.31792 1.46562 1.49989 1.56499 2.02252 2.22784 2.46942 2.87059 3.06716 3.20971 3.29545 3.54265 3.63254 4.29715 4.56743 4.64505 4.75900 4.89433 5.03305 5.15429 5.21507 5.52222 5.63455 5.90586 5.92337 6.26523 6.62311 6.86940 7.45646 8.95252 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.027517 B = 0.007597 C = 0.006678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.318487 B = 3684.675803 C = 4192.144907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.073 3.927 3 H 0.036 0.964 4 C -0.528 4.528 5 H 0.062 0.938 6 C 0.025 3.975 7 N -0.912 5.912 8 Si 0.947 3.053 9 H -0.275 1.275 10 H -0.290 1.290 11 H -0.269 1.269 12 C -0.023 4.023 13 C -0.107 4.107 14 C 0.093 3.907 15 F -0.122 7.122 16 C 0.023 3.977 17 F -0.124 7.124 18 C 0.066 3.934 19 F -0.121 7.121 20 C 0.090 3.910 21 O -0.484 6.484 22 H 0.047 0.953 23 H 0.030 0.970 24 H 0.046 0.954 25 H 0.262 0.738 26 H 0.165 0.835 27 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.429 -4.485 7.762 9.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.054 3.946 3 H 0.054 0.946 4 C -0.566 4.566 5 H 0.080 0.920 6 C -0.175 4.175 7 N -0.550 5.550 8 Si 0.773 3.227 9 H -0.200 1.200 10 H -0.216 1.216 11 H -0.193 1.193 12 C -0.024 4.024 13 C -0.126 4.126 14 C 0.073 3.927 15 F -0.101 7.101 16 C 0.002 3.998 17 F -0.103 7.103 18 C 0.045 3.955 19 F -0.099 7.099 20 C 0.044 3.956 21 O -0.297 6.297 22 H 0.066 0.934 23 H 0.049 0.951 24 H 0.065 0.935 25 H 0.072 0.928 26 H 0.182 0.818 27 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 1.919 -4.276 8.031 9.299 hybrid contribution 0.782 -0.495 -0.752 1.192 sum 2.701 -4.771 7.279 9.113 Atomic orbital electron populations 1.21653 0.96799 0.99875 0.99671 1.17755 0.93299 0.95735 0.87764 0.94611 1.21329 1.36337 1.08258 0.90635 0.92027 1.25587 0.95080 0.95279 1.01560 1.70066 1.45358 1.15076 1.24513 0.85739 0.78794 0.78763 0.79392 1.20021 1.21552 1.19349 1.20627 0.93542 0.93035 0.95186 1.21028 1.01318 0.94394 0.95839 1.17251 0.99961 0.79799 0.95737 1.91527 1.90900 1.32860 1.94777 1.17231 1.04372 0.90364 0.87880 1.91503 1.87589 1.81039 1.50163 1.17641 0.97464 0.88958 0.91391 1.91502 1.71973 1.80361 1.66112 1.18058 0.99525 0.85512 0.92546 1.84791 1.48754 1.18764 1.77366 0.93371 0.95101 0.93519 0.92841 0.81753 0.72895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.19 8.93 71.98 0.64 -4.54 15 2 C 0.07 3.22 2.30 -12.29 -0.03 3.19 15 3 H 0.04 1.76 6.93 -2.39 -0.02 1.74 15 4 C -0.53 -25.40 8.19 25.60 0.21 -25.19 15 5 H 0.06 2.89 7.55 -2.91 -0.02 2.87 15 6 C 0.03 1.26 5.17 84.65 0.44 1.70 15 7 N -0.91 -48.56 12.16 21.45 0.26 -48.30 15 8 Si 0.95 39.96 29.55 68.60 2.03 41.99 15 9 H -0.27 -11.37 7.11 99.48 0.71 -10.67 15 10 H -0.29 -12.29 7.11 99.48 0.71 -11.58 15 11 H -0.27 -11.04 7.11 99.48 0.71 -10.33 15 12 C -0.02 -0.85 4.76 -19.77 -0.09 -0.94 15 13 C -0.11 -3.54 8.59 22.30 0.19 -3.35 15 14 C 0.09 2.90 7.30 22.41 0.16 3.06 15 15 F -0.12 -3.69 17.18 44.97 0.77 -2.92 15 16 C 0.02 0.72 7.31 22.43 0.16 0.88 15 17 F -0.12 -3.91 17.09 44.97 0.77 -3.14 15 18 C 0.07 2.16 7.31 22.48 0.16 2.32 15 19 F -0.12 -3.88 17.02 44.97 0.77 -3.12 15 20 C 0.09 3.11 6.68 22.52 0.15 3.26 15 21 O -0.48 -16.10 12.13 -93.49 -1.13 -17.23 15 22 H 0.05 1.84 7.28 -2.39 -0.02 1.83 15 23 H 0.03 1.19 8.14 -2.39 -0.02 1.17 15 24 H 0.05 2.21 6.84 -2.38 -0.02 2.20 15 25 H 0.26 13.45 8.31 -92.71 -0.77 12.68 15 26 H 0.16 5.21 7.55 -2.91 -0.02 5.18 15 27 H 0.41 10.44 9.06 -74.06 -0.67 9.76 15 Total: -1.00 -53.52 254.67 6.03 -47.49 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: 0.57 Total: 4.85 kcal Atomic # 6 Polarization: -21.62 SS G_CDS: 2.00 Total: -19.62 kcal Atomic # 7 Polarization: -48.56 SS G_CDS: 0.26 Total: -48.30 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -1.13 Total: -17.23 kcal Atomic # 9 Polarization: -11.49 SS G_CDS: 2.31 Total: -9.18 kcal Atomic # 14 Polarization: 39.96 SS G_CDS: 2.03 Total: 41.99 kcal Total: -53.52 6.03 -47.49 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260713548.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.068 kcal (2) G-P(sol) polarization free energy of solvation -53.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds