Wall clock time and date at job start Mon Mar 30 2020 06:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.46900 * 2 1 4 4 C 1.50704 * 109.46906 * 119.99927 * 2 1 3 5 5 H 1.08003 * 119.99790 * 120.00141 * 4 2 1 6 6 C 1.37878 * 120.00113 * 299.99746 * 4 2 1 7 7 N 1.31519 * 119.99962 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99957 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46946 * 90.00115 * 8 6 4 10 10 H 1.48499 * 109.47109 * 209.99873 * 8 6 4 11 11 H 1.48500 * 109.47241 * 330.00117 * 8 6 4 12 12 C 1.50700 * 109.47083 * 239.99757 * 2 1 3 13 13 C 1.38253 * 119.98459 * 300.00245 * 12 2 1 14 14 C 1.38372 * 120.08529 * 180.23607 * 13 12 2 15 15 F 1.35097 * 119.96931 * 179.74474 * 14 13 12 16 16 C 1.38672 * 120.05267 * 359.48519 * 14 13 12 17 17 F 1.35104 * 120.01282 * 180.26085 * 16 14 13 18 18 C 1.38465 * 119.96690 * 0.50998 * 16 14 13 19 19 F 1.35105 * 120.03968 * 179.72276 * 18 16 14 20 20 C 1.38612 * 119.98394 * 119.97525 * 12 2 1 21 21 O 1.36001 * 120.02717 * 0.02562 * 20 12 2 22 22 H 1.09001 * 109.47100 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47205 * 300.00144 * 1 2 3 24 24 H 1.08997 * 109.47580 * 59.99994 * 1 2 3 25 25 H 0.96994 * 119.99982 * 180.02562 * 7 6 4 26 26 H 1.08002 * 119.95412 * 359.94975 * 13 12 2 27 27 H 0.96705 * 114.00387 * 89.99800 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3224 -1.1195 4.0080 9 1 3.6305 -0.5440 4.4119 10 1 1.3444 -0.9489 5.1123 11 1 2.4879 -2.5653 3.7123 12 6 2.0323 -0.7105 -1.2304 13 6 1.6981 -2.0341 -1.4489 14 6 2.1622 -2.6899 -2.5755 15 9 1.8384 -3.9848 -2.7840 16 6 2.9549 -2.0174 -3.4933 17 9 3.4033 -2.6570 -4.5957 18 6 3.2909 -0.6917 -3.2768 19 9 4.0678 -0.0368 -4.1672 20 6 2.8288 -0.0364 -2.1429 21 8 3.1575 1.2657 -1.9280 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 0.7088 1.1614 3.4844 26 1 1.0778 -2.5582 -0.7369 27 1 3.9741 1.3873 -1.4244 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260713552.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:03 Heat of formation + Delta-G solvation = -177.100469 kcal Electronic energy + Delta-G solvation = -17779.515217 eV Core-core repulsion = 14280.340015 eV Total energy + Delta-G solvation = -3499.175202 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -50.82258 -50.22389 -49.51138 -40.84734 -37.64066 -36.15055 -33.25167 -30.73169 -29.69225 -27.19510 -24.96752 -24.13141 -21.91979 -19.94784 -19.30364 -18.93746 -18.23264 -17.85964 -17.67698 -16.98820 -16.62644 -16.52228 -16.08241 -15.81966 -15.45451 -15.14716 -14.89194 -14.49005 -13.85783 -13.53471 -13.12491 -12.91232 -12.81453 -12.45032 -12.25250 -12.12500 -12.00207 -11.39550 -11.01174 -10.44597 -9.88153 -9.60904 -8.08643 -6.23123 -0.35982 -0.32171 1.46367 1.50034 1.57597 2.02095 2.22087 2.46756 2.86395 3.06212 3.22013 3.29123 3.54152 3.62742 4.29268 4.56674 4.65717 4.76915 4.90344 5.06564 5.17779 5.25353 5.52130 5.62968 5.91195 6.04942 6.28949 6.62435 6.85462 7.45924 8.95741 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.027506 B = 0.007545 C = 0.006716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.718499 B = 3710.196747 C = 4167.997263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.075 3.925 3 H 0.032 0.968 4 C -0.526 4.526 5 H 0.061 0.939 6 C 0.023 3.977 7 N -0.912 5.912 8 Si 0.951 3.049 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.267 1.267 12 C -0.023 4.023 13 C -0.106 4.106 14 C 0.092 3.908 15 F -0.122 7.122 16 C 0.023 3.977 17 F -0.124 7.124 18 C 0.067 3.933 19 F -0.121 7.121 20 C 0.091 3.909 21 O -0.484 6.484 22 H 0.040 0.960 23 H 0.064 0.936 24 H 0.025 0.975 25 H 0.262 0.738 26 H 0.163 0.837 27 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.315 -3.937 -7.663 9.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.056 3.944 3 H 0.050 0.950 4 C -0.564 4.564 5 H 0.079 0.921 6 C -0.177 4.177 7 N -0.550 5.550 8 Si 0.777 3.223 9 H -0.204 1.204 10 H -0.213 1.213 11 H -0.192 1.192 12 C -0.024 4.024 13 C -0.125 4.125 14 C 0.072 3.928 15 F -0.101 7.101 16 C 0.002 3.998 17 F -0.103 7.103 18 C 0.046 3.954 19 F -0.099 7.099 20 C 0.044 3.956 21 O -0.296 6.296 22 H 0.059 0.941 23 H 0.083 0.917 24 H 0.044 0.956 25 H 0.072 0.928 26 H 0.180 0.820 27 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 2.772 -3.748 -7.928 9.197 hybrid contribution 0.849 -0.490 0.717 1.215 sum 3.621 -4.238 -7.211 9.115 Atomic orbital electron populations 1.21693 0.96708 0.99941 1.00206 1.17751 0.93528 0.95338 0.87747 0.94987 1.21352 1.31772 1.12743 0.90524 0.92098 1.25605 0.95065 0.95510 1.01546 1.69998 1.37063 1.23821 1.24159 0.85665 0.77943 0.79312 0.79401 1.20417 1.21347 1.19181 1.20635 0.93464 0.93014 0.95331 1.21015 1.01222 0.94441 0.95843 1.17253 1.00073 0.79782 0.95691 1.91525 1.90915 1.32867 1.94785 1.17227 1.04467 0.90412 0.87707 1.91508 1.87726 1.81110 1.49934 1.17627 0.97493 0.88986 0.91297 1.91504 1.71971 1.80341 1.66089 1.18034 0.99493 0.85560 0.92508 1.84796 1.48568 1.18765 1.77516 0.94106 0.91718 0.95586 0.92843 0.81991 0.72837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.58 8.78 71.98 0.63 -4.94 15 2 C 0.07 3.31 2.44 -12.28 -0.03 3.28 15 3 H 0.03 1.55 6.98 -2.39 -0.02 1.54 15 4 C -0.53 -25.36 8.24 25.60 0.21 -25.15 15 5 H 0.06 2.86 7.60 -2.91 -0.02 2.84 15 6 C 0.02 1.13 5.30 84.65 0.45 1.57 15 7 N -0.91 -48.20 11.32 21.45 0.24 -47.96 15 8 Si 0.95 39.95 29.54 68.60 2.03 41.98 15 9 H -0.28 -11.56 7.11 99.48 0.71 -10.85 15 10 H -0.29 -12.12 7.11 99.48 0.71 -11.41 15 11 H -0.27 -10.90 7.11 99.48 0.71 -10.19 15 12 C -0.02 -0.87 4.75 -19.77 -0.09 -0.97 15 13 C -0.11 -3.58 8.68 22.31 0.19 -3.39 15 14 C 0.09 2.92 7.30 22.41 0.16 3.08 15 15 F -0.12 -3.75 17.18 44.97 0.77 -2.98 15 16 C 0.02 0.73 7.31 22.43 0.16 0.90 15 17 F -0.12 -3.91 17.09 44.97 0.77 -3.14 15 18 C 0.07 2.16 7.31 22.48 0.16 2.33 15 19 F -0.12 -3.84 17.02 44.97 0.77 -3.08 15 20 C 0.09 3.11 6.68 22.51 0.15 3.26 15 21 O -0.48 -15.81 12.13 -93.57 -1.13 -16.95 15 22 H 0.04 1.65 7.39 -2.39 -0.02 1.63 15 23 H 0.06 3.18 6.07 -2.39 -0.01 3.16 15 24 H 0.03 1.02 8.14 -2.39 -0.02 1.00 15 25 H 0.26 13.34 8.31 -92.71 -0.77 12.57 15 26 H 0.16 5.32 7.57 -2.91 -0.02 5.29 15 27 H 0.41 10.04 9.07 -74.05 -0.67 9.37 15 Total: -1.00 -53.22 253.54 6.01 -47.21 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: 0.57 Total: 4.95 kcal Atomic # 6 Polarization: -22.03 SS G_CDS: 2.00 Total: -20.03 kcal Atomic # 7 Polarization: -48.20 SS G_CDS: 0.24 Total: -47.96 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: -1.13 Total: -16.95 kcal Atomic # 9 Polarization: -11.51 SS G_CDS: 2.31 Total: -9.20 kcal Atomic # 14 Polarization: 39.95 SS G_CDS: 2.03 Total: 41.98 kcal Total: -53.22 6.01 -47.21 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260713552.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.892 kcal (2) G-P(sol) polarization free energy of solvation -53.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds