Wall clock time and date at job start Mon Mar 30 2020 05:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.47064 * 179.97438 * 9 7 2 11 11 C 1.38231 * 120.00472 * 99.72298 * 10 9 7 12 12 C 1.38227 * 120.00782 * 179.79116 * 11 10 9 13 13 C 1.50700 * 119.98328 * 180.20936 * 12 11 10 14 14 F 1.39906 * 109.47334 * 300.25093 * 13 12 11 15 15 F 1.39896 * 109.47469 * 60.25337 * 13 12 11 16 16 C 1.38261 * 120.02990 * 0.46450 * 12 11 10 17 17 C 1.38193 * 120.00970 * 359.78897 * 16 12 11 18 18 C 1.38332 * 120.00693 * 279.99813 * 10 9 7 19 19 Cl 1.73604 * 120.01172 * 359.97438 * 18 10 9 20 20 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 22 22 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 23 23 H 1.07994 * 119.99825 * 0.02562 * 11 10 9 24 24 H 1.08999 * 109.47351 * 180.25535 * 13 12 11 25 25 H 1.07995 * 119.99361 * 179.76959 * 16 12 11 26 26 H 1.08008 * 120.00469 * 179.97438 * 17 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 6 2.5257 -4.3014 1.1804 12 6 3.4206 -5.3549 1.1797 13 6 3.7388 -6.0736 2.4655 14 9 4.2773 -5.1674 3.3855 15 9 2.5679 -6.6307 2.9905 16 6 4.0280 -5.7461 0.0009 17 6 3.7372 -5.0868 -1.1783 18 6 2.8378 -4.0354 -1.1792 19 17 2.4720 -3.2067 -2.6602 20 1 -0.4850 0.8401 0.0004 21 1 0.6239 -2.5567 0.8903 22 1 0.6246 -2.5571 -0.8897 23 1 2.0545 -3.9940 2.1022 24 1 4.4619 -6.8654 2.2699 25 1 4.7299 -6.5669 0.0017 26 1 4.2120 -5.3923 -2.0991 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260713656.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:36 Heat of formation + Delta-G solvation = -99.548057 kcal Electronic energy + Delta-G solvation = -15173.198035 eV Core-core repulsion = 12105.722134 eV Total energy + Delta-G solvation = -3067.475902 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.032 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.84039 -46.83109 -39.05538 -35.83766 -33.68283 -31.69103 -31.12691 -27.39706 -25.73532 -23.52871 -21.82130 -20.47510 -17.24673 -17.06399 -16.93952 -16.31018 -16.09942 -14.93593 -14.58814 -13.89667 -13.78318 -13.21352 -13.13713 -12.92763 -12.74168 -12.12716 -11.89347 -11.53040 -11.21122 -11.03093 -10.91616 -10.62906 -10.50363 -10.22814 -9.64945 -9.50489 -8.53264 -8.42842 -8.08238 -6.05494 -4.08478 1.32560 1.68699 2.75668 3.30881 3.37023 3.40931 3.85770 3.89709 4.25820 4.44650 4.68962 5.14558 5.17378 5.18613 5.31149 5.62899 5.79257 6.01808 6.26723 6.41841 6.64774 6.70538 7.13912 7.47504 7.61385 7.88850 8.24603 8.93931 9.54793 11.04971 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.021838 B = 0.007807 C = 0.006435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.889456 B = 3585.584882 C = 4349.926856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.062 3.938 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.505 4.505 8 H 0.056 0.944 9 C 0.046 3.954 10 C -0.029 4.029 11 C -0.074 4.074 12 C -0.175 4.175 13 C 0.317 3.683 14 F -0.200 7.200 15 F -0.202 7.202 16 C -0.105 4.105 17 C -0.119 4.119 18 C -0.017 4.017 19 Cl -0.056 7.056 20 H 0.262 0.738 21 H 0.032 0.968 22 H 0.043 0.957 23 H 0.132 0.868 24 H 0.114 0.886 25 H 0.128 0.872 26 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.440 -12.137 0.049 14.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.543 4.543 8 H 0.074 0.926 9 C 0.009 3.991 10 C -0.030 4.030 11 C -0.093 4.093 12 C -0.176 4.176 13 C 0.263 3.737 14 F -0.182 7.182 15 F -0.183 7.183 16 C -0.123 4.123 17 C -0.138 4.138 18 C -0.044 4.044 19 Cl -0.027 7.027 20 H 0.072 0.928 21 H 0.050 0.950 22 H 0.061 0.939 23 H 0.150 0.850 24 H 0.131 0.869 25 H 0.146 0.854 26 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 7.235 -11.930 -0.042 13.952 hybrid contribution 0.397 1.072 -0.029 1.143 sum 7.632 -10.859 -0.071 13.272 Atomic orbital electron populations 1.69946 1.05994 1.26839 1.50366 1.24936 0.94833 0.99107 0.95090 0.86559 0.79883 0.83243 0.78203 1.20561 1.21157 1.19788 1.20883 0.92830 0.89406 1.51195 0.92551 1.18463 0.92375 0.89006 0.99225 1.20683 0.96429 0.95872 0.90017 1.20897 0.96258 0.93559 0.98551 1.20318 1.02558 1.00379 0.94296 1.20347 0.82570 0.87802 0.82988 1.93018 1.86025 1.70109 1.69015 1.93002 1.51507 1.85737 1.88092 1.20568 1.00233 1.00325 0.91206 1.20906 0.98488 0.95859 0.98548 1.20990 0.99167 0.95493 0.88718 1.98358 1.93611 1.78081 1.32676 0.92816 0.95014 0.93931 0.85048 0.86889 0.85437 0.85168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.08 13.29 55.43 0.74 -25.35 15 2 C 0.06 1.73 5.46 -17.82 -0.10 1.64 15 3 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 15 4 H -0.28 -6.68 7.11 56.52 0.40 -6.27 15 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 15 6 H -0.27 -6.51 7.11 56.52 0.40 -6.11 15 7 C -0.50 -13.82 8.87 -34.44 -0.31 -14.13 15 8 H 0.06 1.55 7.74 -52.49 -0.41 1.14 15 9 C 0.05 1.16 4.57 -29.03 -0.13 1.02 15 10 C -0.03 -0.62 5.08 -104.59 -0.53 -1.15 15 11 C -0.07 -1.40 9.22 -39.59 -0.37 -1.77 15 12 C -0.17 -2.69 5.37 -104.62 -0.56 -3.25 15 13 C 0.32 4.10 5.45 36.01 0.20 4.30 15 14 F -0.20 -3.02 17.25 2.25 0.04 -2.98 15 15 F -0.20 -2.93 17.26 2.25 0.04 -2.89 15 16 C -0.10 -1.42 9.67 -39.59 -0.38 -1.80 15 17 C -0.12 -1.81 9.83 -39.55 -0.39 -2.20 15 18 C -0.02 -0.32 6.30 -39.50 -0.25 -0.57 15 19 Cl -0.06 -1.08 27.33 -51.86 -1.42 -2.50 15 20 H 0.26 7.26 8.31 -40.82 -0.34 6.92 15 21 H 0.03 0.84 8.01 -51.93 -0.42 0.42 15 22 H 0.04 1.13 7.35 -51.93 -0.38 0.75 15 23 H 0.13 2.49 8.04 -52.49 -0.42 2.07 15 24 H 0.11 0.97 7.88 -51.93 -0.41 0.56 15 25 H 0.13 1.20 7.94 -52.49 -0.42 0.78 15 26 H 0.13 1.61 8.06 -52.48 -0.42 1.19 15 LS Contribution 259.13 15.07 3.91 3.91 Total: -1.00 -29.60 259.13 -6.55 -36.14 By element: Atomic # 1 Polarization: -2.95 SS G_CDS: -2.01 Total: -4.96 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: -2.82 Total: -17.90 kcal Atomic # 7 Polarization: -26.08 SS G_CDS: 0.74 Total: -25.35 kcal Atomic # 9 Polarization: -5.95 SS G_CDS: 0.08 Total: -5.87 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -1.42 Total: -2.50 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -29.60 -6.55 -36.14 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260713656.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.407 kcal (2) G-P(sol) polarization free energy of solvation -29.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds