Wall clock time and date at job start Mon Mar 30 2020 05:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.47064 * 179.97438 * 9 7 2 11 11 C 1.38231 * 120.00472 * 99.72298 * 10 9 7 12 12 C 1.38227 * 120.00782 * 179.79116 * 11 10 9 13 13 C 1.50700 * 119.98328 * 180.20936 * 12 11 10 14 14 F 1.39906 * 109.47334 * 300.25093 * 13 12 11 15 15 F 1.39896 * 109.47469 * 60.25337 * 13 12 11 16 16 C 1.38261 * 120.02990 * 0.46450 * 12 11 10 17 17 C 1.38193 * 120.00970 * 359.78897 * 16 12 11 18 18 C 1.38332 * 120.00693 * 279.99813 * 10 9 7 19 19 Cl 1.73604 * 120.01172 * 359.97438 * 18 10 9 20 20 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 22 22 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 23 23 H 1.07994 * 119.99825 * 0.02562 * 11 10 9 24 24 H 1.08999 * 109.47351 * 180.25535 * 13 12 11 25 25 H 1.07995 * 119.99361 * 179.76959 * 16 12 11 26 26 H 1.08008 * 120.00469 * 179.97438 * 17 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 6 2.5257 -4.3014 1.1804 12 6 3.4206 -5.3549 1.1797 13 6 3.7388 -6.0736 2.4655 14 9 4.2773 -5.1674 3.3855 15 9 2.5679 -6.6307 2.9905 16 6 4.0280 -5.7461 0.0009 17 6 3.7372 -5.0868 -1.1783 18 6 2.8378 -4.0354 -1.1792 19 17 2.4720 -3.2067 -2.6602 20 1 -0.4850 0.8401 0.0004 21 1 0.6239 -2.5567 0.8903 22 1 0.6246 -2.5571 -0.8897 23 1 2.0545 -3.9940 2.1022 24 1 4.4619 -6.8654 2.2699 25 1 4.7299 -6.5669 0.0017 26 1 4.2120 -5.3923 -2.0991 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260713656.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:35 Heat of formation + Delta-G solvation = -115.730262 kcal Electronic energy + Delta-G solvation = -15173.899749 eV Core-core repulsion = 12105.722134 eV Total energy + Delta-G solvation = -3068.177615 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.032 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.90452 -47.91431 -40.40806 -37.27784 -35.58869 -33.40683 -32.43730 -29.21390 -26.90304 -25.41012 -23.15887 -21.90000 -18.57573 -18.29611 -18.13367 -18.09531 -17.37809 -16.53924 -16.29758 -15.22372 -14.93563 -14.71642 -14.33436 -14.30258 -14.15964 -13.82786 -13.36200 -13.22757 -12.83386 -12.67282 -12.43111 -12.38402 -12.02254 -11.79937 -11.57744 -11.28289 -10.59422 -9.86167 -9.57411 -8.19987 -6.30462 0.00235 0.36769 1.33338 1.38532 1.38976 1.49888 2.37517 2.59022 2.84144 3.12757 3.31145 3.63532 3.91851 4.08262 4.13671 4.30953 4.50603 4.66234 4.93838 5.06283 5.18325 5.32699 5.33242 5.69985 5.73021 5.81790 6.14521 6.78861 7.36601 8.90485 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.021838 B = 0.007807 C = 0.006435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.889456 B = 3585.584882 C = 4349.926856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.009 3.991 3 Si 0.957 3.043 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.512 4.512 8 H 0.051 0.949 9 C 0.057 3.943 10 C -0.067 4.067 11 C -0.095 4.095 12 C -0.174 4.174 13 C 0.314 3.686 14 F -0.216 7.216 15 F -0.214 7.214 16 C -0.076 4.076 17 C -0.111 4.111 18 C -0.033 4.033 19 Cl -0.071 7.071 20 H 0.264 0.736 21 H 0.000 1.000 22 H 0.018 0.982 23 H 0.112 0.888 24 H 0.178 0.822 25 H 0.190 0.810 26 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.265 -14.009 -0.176 17.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.189 4.189 3 Si 0.782 3.218 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.550 4.550 8 H 0.069 0.931 9 C 0.020 3.980 10 C -0.068 4.068 11 C -0.113 4.113 12 C -0.175 4.175 13 C 0.261 3.739 14 F -0.197 7.197 15 F -0.195 7.195 16 C -0.094 4.094 17 C -0.129 4.129 18 C -0.060 4.060 19 Cl -0.042 7.042 20 H 0.073 0.927 21 H 0.019 0.981 22 H 0.036 0.964 23 H 0.130 0.870 24 H 0.194 0.806 25 H 0.207 0.793 26 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 10.064 -13.811 -0.264 17.091 hybrid contribution -0.457 1.538 0.058 1.606 sum 9.607 -12.273 -0.206 15.587 Atomic orbital electron populations 1.70069 1.07542 1.27757 1.51567 1.25793 0.95644 1.02711 0.94791 0.85559 0.78736 0.79000 0.78508 1.19782 1.20572 1.19085 1.21140 0.92646 0.90733 1.50434 0.93068 1.18117 0.92770 0.90693 0.96420 1.20307 0.97866 0.96349 0.92274 1.20834 0.98016 0.95430 0.97060 1.20700 1.01018 0.98934 0.96810 1.20935 0.83259 0.88560 0.81107 1.92992 1.86131 1.71081 1.69501 1.92983 1.52670 1.85737 1.88143 1.21234 0.98899 1.00157 0.89111 1.21367 0.96729 0.93948 1.00892 1.21188 1.00451 0.96947 0.87367 1.98345 1.93904 1.78746 1.33215 0.92688 0.98129 0.96413 0.86975 0.80551 0.79320 0.81588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.38 13.29 21.45 0.28 -56.09 15 2 C 0.01 0.50 5.46 84.66 0.46 0.96 15 3 Si 0.96 44.91 29.54 68.60 2.03 46.94 15 4 H -0.27 -12.39 7.11 99.48 0.71 -11.68 15 5 H -0.28 -12.81 7.11 99.48 0.71 -12.10 15 6 H -0.27 -12.10 7.11 99.48 0.71 -11.40 15 7 C -0.51 -29.09 8.87 25.60 0.23 -28.86 15 8 H 0.05 2.89 7.74 -2.91 -0.02 2.87 15 9 C 0.06 3.04 4.57 29.10 0.13 3.18 15 10 C -0.07 -2.92 5.08 -19.84 -0.10 -3.02 15 11 C -0.09 -3.63 9.22 22.27 0.21 -3.42 15 12 C -0.17 -4.83 5.37 -19.86 -0.11 -4.94 15 13 C 0.31 6.94 5.45 71.24 0.39 7.33 15 14 F -0.22 -6.00 17.25 44.97 0.78 -5.22 15 15 F -0.21 -5.70 17.26 44.97 0.78 -4.93 15 16 C -0.08 -1.64 9.67 22.26 0.22 -1.43 15 17 C -0.11 -2.93 9.83 22.29 0.22 -2.71 15 18 C -0.03 -1.22 6.30 22.32 0.14 -1.08 15 19 Cl -0.07 -2.75 27.33 -2.72 -0.07 -2.83 15 20 H 0.26 15.10 8.31 -92.71 -0.77 14.33 15 21 H 0.00 0.02 8.01 -2.39 -0.02 0.00 15 22 H 0.02 1.01 7.35 -2.39 -0.02 0.99 15 23 H 0.11 4.55 8.04 -2.91 -0.02 4.52 15 24 H 0.18 1.78 7.88 -2.39 -0.02 1.76 15 25 H 0.19 1.87 7.94 -2.91 -0.02 1.84 15 26 H 0.17 3.22 8.06 -2.91 -0.02 3.20 15 Total: -1.00 -68.57 259.13 6.77 -61.80 By element: Atomic # 1 Polarization: -6.87 SS G_CDS: 1.20 Total: -5.67 kcal Atomic # 6 Polarization: -35.78 SS G_CDS: 1.78 Total: -34.00 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: 0.28 Total: -56.09 kcal Atomic # 9 Polarization: -11.70 SS G_CDS: 1.55 Total: -10.15 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Atomic # 17 Polarization: -2.75 SS G_CDS: -0.07 Total: -2.83 kcal Total: -68.57 6.77 -61.80 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260713656.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.932 kcal (2) G-P(sol) polarization free energy of solvation -68.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds