Wall clock time and date at job start Mon Mar 30 2020 06:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00247 * 2 1 4 4 H 1.48501 * 109.46952 * 239.99643 * 3 2 1 5 5 H 1.48499 * 109.46882 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.46953 * 119.99871 * 3 2 1 7 7 C 1.37884 * 119.99440 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99418 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00052 * 359.97438 * 7 2 1 10 10 C 1.50702 * 109.46785 * 179.97438 * 9 7 2 11 11 C 1.38755 * 120.02630 * 90.00578 * 10 9 7 12 12 O 1.35905 * 120.05599 * 0.02562 * 11 10 9 13 13 C 1.38706 * 119.88849 * 179.97438 * 11 10 9 14 14 C 1.38162 * 119.94729 * 359.97438 * 13 11 10 15 15 C 1.38247 * 120.05352 * 359.97438 * 14 13 11 16 16 C 1.38123 * 120.03154 * 270.27115 * 10 9 7 17 17 C 1.50696 * 119.97059 * 0.02562 * 16 10 9 18 18 F 1.39898 * 109.46878 * 180.27074 * 17 16 10 19 19 F 1.39897 * 109.47386 * 300.26979 * 17 16 10 20 20 F 1.39902 * 109.47222 * 60.27269 * 17 16 10 21 21 H 0.97008 * 119.99501 * 0.02562 * 1 2 3 22 22 H 1.09005 * 109.46821 * 60.00496 * 9 7 2 23 23 H 1.08991 * 109.47284 * 300.00170 * 9 7 2 24 24 H 0.96704 * 113.99927 * 269.98167 * 12 11 10 25 25 H 1.08007 * 120.02422 * 180.02562 * 13 11 10 26 26 H 1.07998 * 119.97579 * 179.97438 * 14 13 11 27 27 H 1.08002 * 119.94131 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0017 10 6 2.2301 -3.6447 0.0015 11 6 2.6821 -4.1720 1.2027 12 8 2.2421 -3.6567 2.3807 13 6 3.5831 -5.2266 1.1991 14 6 4.0277 -5.7498 0.0002 15 6 3.5750 -5.2234 -1.1953 16 6 2.6827 -4.1670 -1.1944 17 6 2.1972 -3.5905 -2.4994 18 9 2.7862 -4.2829 -3.5628 19 9 0.8059 -3.7151 -2.5754 20 9 2.5490 -2.2383 -2.5715 21 1 -0.4850 0.8402 -0.0004 22 1 0.6239 -2.5575 -0.8881 23 1 0.6246 -2.5563 0.8919 24 1 2.7862 -2.9334 2.7213 25 1 3.9360 -5.6390 2.1329 26 1 4.7295 -6.5707 -0.0031 27 1 3.9241 -5.6335 -2.1314 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260732658.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:03 Heat of formation + Delta-G solvation = -175.349672 kcal Electronic energy + Delta-G solvation = -18321.496164 eV Core-core repulsion = 14822.396883 eV Total energy + Delta-G solvation = -3499.099281 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.45476 -47.05440 -46.72196 -39.46444 -36.23864 -33.58590 -31.69965 -30.08900 -27.28555 -25.34449 -23.38142 -21.62565 -20.68603 -18.28537 -17.77204 -17.66964 -16.57681 -16.32918 -15.48280 -15.24235 -14.55244 -14.31659 -13.79475 -13.72141 -13.38533 -13.03640 -12.99654 -12.94028 -12.46651 -12.19348 -11.79764 -11.62394 -11.45396 -11.06882 -10.80616 -10.50118 -10.21217 -9.66443 -9.47621 -8.66763 -8.42854 -8.02884 -6.05904 -4.10080 1.34211 1.68449 3.30155 3.34816 3.36156 3.37848 3.80594 4.38279 4.42765 4.65141 4.85531 5.17087 5.22930 5.29331 5.41263 5.45521 5.79101 6.02375 6.30528 6.51595 6.63611 6.73961 7.05968 7.49058 7.61348 7.86732 8.17532 8.21701 8.91559 9.52805 11.04320 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.020899 B = 0.010909 C = 0.008374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.466993 B = 2565.983519 C = 3343.045233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.064 3.936 3 Si 0.895 3.105 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.508 4.508 8 H 0.055 0.945 9 C 0.031 3.969 10 C -0.010 4.010 11 C 0.098 3.902 12 O -0.488 6.488 13 C -0.120 4.120 14 C -0.137 4.137 15 C -0.088 4.088 16 C -0.179 4.179 17 C 0.511 3.489 18 F -0.194 7.194 19 F -0.176 7.176 20 F -0.154 7.154 21 H 0.263 0.737 22 H 0.043 0.957 23 H 0.046 0.954 24 H 0.392 0.608 25 H 0.127 0.873 26 H 0.127 0.873 27 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.138 -9.030 -0.839 11.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.722 3.278 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.546 4.546 8 H 0.073 0.927 9 C -0.005 4.005 10 C -0.011 4.011 11 C 0.053 3.947 12 O -0.298 6.298 13 C -0.139 4.139 14 C -0.155 4.155 15 C -0.106 4.106 16 C -0.181 4.181 17 C 0.457 3.543 18 F -0.175 7.175 19 F -0.157 7.157 20 F -0.135 7.135 21 H 0.073 0.927 22 H 0.061 0.939 23 H 0.064 0.936 24 H 0.248 0.752 25 H 0.145 0.855 26 H 0.145 0.855 27 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 6.510 -9.302 -0.928 11.392 hybrid contribution 0.745 1.380 -0.158 1.577 sum 7.256 -7.921 -1.087 10.797 Atomic orbital electron populations 1.69949 1.06016 1.26987 1.49750 1.24939 0.94826 0.99089 0.94986 0.86612 0.79574 0.82909 0.78701 1.20075 1.21189 1.20214 1.20778 0.92595 0.89288 1.51978 0.92677 1.18636 0.92715 0.88877 1.00312 1.20894 0.95155 0.94686 0.90341 1.18167 0.95865 0.95131 0.85527 1.84732 1.55804 1.54439 1.34853 1.21536 0.96386 0.97278 0.98692 1.20739 1.01896 1.01381 0.91452 1.20899 0.95841 0.94757 0.99091 1.19784 1.04705 1.01313 0.92251 1.18181 0.75291 0.76935 0.83930 1.93085 1.84268 1.79841 1.60332 1.93161 1.30343 1.95714 1.96516 1.93330 1.91459 1.32256 1.96447 0.92697 0.93919 0.93628 0.75185 0.85505 0.85499 0.85207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.12 13.29 55.43 0.74 -25.38 15 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 15 3 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 15 4 H -0.28 -6.56 7.11 56.52 0.40 -6.15 15 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 15 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 7 C -0.51 -13.76 7.69 -34.44 -0.26 -14.02 15 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 15 9 C 0.03 0.80 4.19 -29.03 -0.12 0.68 15 10 C -0.01 -0.21 5.05 -104.47 -0.53 -0.74 15 11 C 0.10 1.84 6.68 -39.22 -0.26 1.58 15 12 O -0.49 -8.94 12.55 -19.44 -0.24 -9.18 15 13 C -0.12 -1.82 9.99 -39.44 -0.39 -2.22 15 14 C -0.14 -1.91 10.04 -39.61 -0.40 -2.30 15 15 C -0.09 -1.39 9.43 -39.56 -0.37 -1.76 15 16 C -0.18 -3.50 5.37 -104.65 -0.56 -4.07 15 17 C 0.51 10.37 2.81 36.00 0.10 10.48 15 18 F -0.19 -3.42 15.97 2.25 0.04 -3.38 15 19 F -0.18 -3.78 15.31 2.25 0.03 -3.75 15 20 F -0.15 -3.53 15.27 2.25 0.03 -3.49 15 21 H 0.26 7.34 8.31 -40.82 -0.34 7.00 15 22 H 0.04 1.17 5.52 -51.93 -0.29 0.89 15 23 H 0.05 1.25 7.53 -51.93 -0.39 0.86 15 24 H 0.39 5.80 9.06 45.56 0.41 6.21 15 25 H 0.13 1.56 8.06 -52.48 -0.42 1.14 15 26 H 0.13 1.32 8.06 -52.49 -0.42 0.89 15 27 H 0.13 1.74 7.15 -52.49 -0.38 1.36 15 LS Contribution 251.38 15.07 3.79 3.79 Total: -1.00 -30.32 251.38 -4.56 -34.88 By element: Atomic # 1 Polarization: 1.93 SS G_CDS: -1.03 Total: 0.91 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: -2.90 Total: -10.70 kcal Atomic # 7 Polarization: -26.12 SS G_CDS: 0.74 Total: -25.38 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: -0.24 Total: -9.18 kcal Atomic # 9 Polarization: -10.73 SS G_CDS: 0.10 Total: -10.62 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -30.32 -4.56 -34.88 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260732658.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.466 kcal (2) G-P(sol) polarization free energy of solvation -30.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds