Wall clock time and date at job start Mon Mar 30 2020 06:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.38167 * 120.02175 * 264.71879 * 10 9 7 12 12 C 1.38252 * 120.04957 * 179.79336 * 11 10 9 13 13 C 1.38282 * 120.11061 * 0.46607 * 12 11 10 14 14 C 1.38123 * 120.06094 * 359.78894 * 13 12 11 15 15 C 1.50697 * 120.03265 * 180.02562 * 14 13 12 16 16 F 1.39895 * 109.46849 * 359.97438 * 15 14 13 17 17 F 1.39891 * 109.47215 * 119.97823 * 15 14 13 18 18 F 1.39906 * 109.47048 * 239.98053 * 15 14 13 19 19 C 1.38706 * 120.03130 * 85.00075 * 10 9 7 20 20 O 1.35901 * 120.05375 * 359.94994 * 19 10 9 21 21 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 23 23 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 24 24 H 1.07997 * 119.97696 * 0.02879 * 11 10 9 25 25 H 1.07998 * 119.94447 * 180.21287 * 12 11 10 26 26 H 1.07999 * 119.97237 * 179.76918 * 13 12 11 27 27 H 0.96708 * 114.00091 * 90.00089 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.5958 -4.2363 -1.2042 12 6 3.4975 -5.2844 -1.2099 13 6 4.0281 -5.7494 -0.0206 14 6 3.6618 -5.1648 1.1760 15 6 4.2409 -5.6717 2.4716 16 9 5.1167 -6.7302 2.2082 17 9 4.9366 -4.6379 3.1075 18 9 3.2068 -6.1176 3.3018 19 6 2.7607 -4.1096 1.1839 20 8 2.3990 -3.5323 2.3598 21 1 -0.4850 0.8401 -0.0004 22 1 0.6242 -2.5609 0.8844 23 1 0.6244 -2.5529 -0.8956 24 1 2.1799 -3.8774 -2.1340 25 1 3.7847 -5.7434 -2.1443 26 1 4.7294 -6.5707 -0.0273 27 1 1.6249 -3.9370 2.7750 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260745834.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:23 Heat of formation + Delta-G solvation = -198.943773 kcal Electronic energy + Delta-G solvation = -17814.076304 eV Core-core repulsion = 14313.953905 eV Total energy + Delta-G solvation = -3500.122398 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -51.15568 -48.68218 -48.60964 -40.92980 -37.64921 -35.57931 -33.49335 -31.61507 -28.93707 -26.91670 -25.37874 -23.14343 -22.19614 -19.72383 -19.48026 -19.19091 -18.75347 -18.46752 -16.75713 -16.64746 -16.49821 -15.60189 -15.42500 -15.36891 -15.06095 -14.84220 -14.79286 -14.61492 -14.30477 -13.77401 -13.48951 -13.32799 -13.08712 -12.74464 -12.66199 -12.35823 -11.92262 -11.60642 -11.25401 -10.59640 -10.03574 -9.50788 -8.21023 -6.31285 -0.04449 0.32583 1.38316 1.39932 1.51042 1.66217 2.37318 2.55477 2.72258 3.03999 3.11676 3.22503 3.43602 3.98738 4.13388 4.36504 4.43544 4.65286 4.91682 5.13612 5.21354 5.33114 5.39989 5.72988 5.79130 5.81735 6.16451 6.74289 6.78494 7.36037 8.88629 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.030493 B = 0.006977 C = 0.006433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.014016 B = 4012.467326 C = 4351.219745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.009 3.991 3 Si 0.959 3.041 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.273 1.273 7 C -0.520 4.520 8 H 0.045 0.955 9 C 0.066 3.934 10 C -0.099 4.099 11 C -0.084 4.084 12 C -0.116 4.116 13 C -0.075 4.075 14 C -0.226 4.226 15 C 0.521 3.479 16 F -0.172 7.172 17 F -0.184 7.184 18 F -0.180 7.180 19 C 0.138 3.862 20 O -0.498 6.498 21 H 0.265 0.735 22 H 0.009 0.991 23 H 0.013 0.987 24 H 0.139 0.861 25 H 0.173 0.827 26 H 0.166 0.834 27 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.278 -13.399 0.285 15.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.189 4.189 3 Si 0.784 3.216 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.198 1.198 7 C -0.558 4.558 8 H 0.064 0.936 9 C 0.029 3.971 10 C -0.099 4.099 11 C -0.102 4.102 12 C -0.134 4.134 13 C -0.093 4.093 14 C -0.228 4.228 15 C 0.467 3.533 16 F -0.153 7.153 17 F -0.165 7.165 18 F -0.162 7.162 19 C 0.093 3.907 20 O -0.310 6.310 21 H 0.074 0.926 22 H 0.027 0.973 23 H 0.031 0.969 24 H 0.156 0.844 25 H 0.191 0.809 26 H 0.184 0.816 27 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 7.615 -12.935 0.235 15.012 hybrid contribution -0.316 0.837 0.615 1.086 sum 7.298 -12.098 0.850 14.154 Atomic orbital electron populations 1.70048 1.07362 1.27830 1.51531 1.25786 0.95725 1.02681 0.94748 0.85538 0.78482 0.78977 0.78623 1.19312 1.20500 1.19834 1.21251 0.92656 0.91361 1.50552 0.93619 1.17940 0.92545 0.90189 0.96423 1.20832 0.98919 0.97072 0.93124 1.21466 0.96462 0.95007 0.97279 1.21483 0.96311 0.96385 0.99190 1.21162 0.98890 0.99287 0.89980 1.20454 1.06505 1.01788 0.94094 1.18028 0.75758 0.74919 0.84600 1.93140 1.70349 1.57956 1.93889 1.93205 1.80098 1.59270 1.83947 1.93170 1.58850 1.89615 1.74531 1.18085 0.95289 0.90976 0.86369 1.84847 1.51922 1.60173 1.34034 0.92602 0.97298 0.96855 0.84360 0.80924 0.81625 0.74112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.10 13.29 21.45 0.28 -54.82 15 2 C 0.01 0.50 5.46 84.66 0.46 0.96 15 3 Si 0.96 44.74 29.54 68.60 2.03 46.76 15 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 15 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 15 6 H -0.27 -12.69 7.11 99.48 0.71 -11.98 15 7 C -0.52 -29.57 9.09 25.60 0.23 -29.34 15 8 H 0.05 2.63 7.74 -2.91 -0.02 2.60 15 9 C 0.07 3.38 4.83 29.10 0.14 3.52 15 10 C -0.10 -4.10 5.08 -19.77 -0.10 -4.20 15 11 C -0.08 -2.78 9.68 22.26 0.22 -2.57 15 12 C -0.12 -2.88 10.04 22.28 0.22 -2.66 15 13 C -0.08 -1.92 9.43 22.25 0.21 -1.71 15 14 C -0.23 -7.22 5.38 -19.77 -0.11 -7.33 15 15 C 0.52 15.61 2.99 71.23 0.21 15.82 15 16 F -0.17 -4.43 15.97 44.97 0.72 -3.72 15 17 F -0.18 -6.25 16.95 44.97 0.76 -5.49 15 18 F -0.18 -5.28 16.95 44.97 0.76 -4.52 15 19 C 0.14 5.33 6.56 22.50 0.15 5.47 15 20 O -0.50 -19.81 11.55 -92.44 -1.07 -20.88 15 21 H 0.27 14.82 8.31 -92.70 -0.77 14.05 15 22 H 0.01 0.48 7.69 -2.38 -0.02 0.46 15 23 H 0.01 0.70 8.05 -2.39 -0.02 0.68 15 24 H 0.14 4.28 8.06 -2.91 -0.02 4.26 15 25 H 0.17 2.76 8.06 -2.91 -0.02 2.74 15 26 H 0.17 3.09 7.15 -2.91 -0.02 3.07 15 27 H 0.40 12.45 9.06 -74.05 -0.67 11.78 15 Total: -1.00 -65.87 258.23 5.68 -60.19 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: 0.55 Total: 4.49 kcal Atomic # 6 Polarization: -23.67 SS G_CDS: 1.64 Total: -22.03 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: 0.28 Total: -54.82 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: -1.07 Total: -20.88 kcal Atomic # 9 Polarization: -15.97 SS G_CDS: 2.24 Total: -13.72 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.76 kcal Total: -65.87 5.68 -60.19 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260745834.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.750 kcal (2) G-P(sol) polarization free energy of solvation -65.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds