Wall clock time and date at job start Mon Mar 30 2020 05:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47481 * 2 1 4 4 C 1.50707 * 109.46823 * 120.00149 * 2 1 3 5 5 H 1.07999 * 120.00085 * 119.99656 * 4 2 1 6 6 C 1.37877 * 119.99624 * 299.99706 * 4 2 1 7 7 N 1.31509 * 120.00349 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99803 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47342 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47488 * 119.99892 * 8 6 4 11 11 H 1.48503 * 109.47298 * 239.99730 * 8 6 4 12 12 C 1.50702 * 109.46756 * 239.99342 * 2 1 3 13 13 C 1.38242 * 119.97528 * 299.98078 * 12 2 1 14 14 C 1.38216 * 120.08363 * 180.02562 * 13 12 2 15 15 C 1.38435 * 120.01940 * 359.78992 * 14 13 12 16 16 F 1.35094 * 120.02833 * 180.25166 * 15 14 13 17 17 C 1.38618 * 119.94005 * 0.46460 * 15 14 13 18 18 F 1.35104 * 120.03667 * 179.78848 * 17 15 14 19 19 C 1.38317 * 119.96764 * 120.00697 * 12 2 1 20 20 Cl 1.73605 * 120.01194 * 359.97438 * 19 12 2 21 21 H 1.09002 * 109.47162 * 60.00001 * 1 2 3 22 22 H 1.09002 * 109.47686 * 180.02562 * 1 2 3 23 23 H 1.09010 * 109.47042 * 300.00474 * 1 2 3 24 24 H 0.97004 * 120.00512 * 180.02562 * 7 6 4 25 25 H 1.08001 * 119.95892 * 0.02562 * 13 12 2 26 26 H 1.07997 * 119.99187 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6531 -1.5886 1.1314 6 6 1.6991 -0.2394 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3223 -1.1195 4.0080 9 1 3.1471 -2.2864 3.6039 10 1 3.1471 -0.1858 4.8162 11 1 1.1675 -1.5865 4.8166 12 6 2.0322 -0.7106 -1.2304 13 6 1.6982 -2.0342 -1.4483 14 6 2.1581 -2.6883 -2.5758 15 6 2.9506 -2.0169 -3.4910 16 9 3.3959 -2.6545 -4.5956 17 6 3.2904 -0.6912 -3.2708 18 9 4.0673 -0.0354 -4.1605 19 6 2.8275 -0.0379 -2.1405 20 17 3.2462 1.6243 -1.8657 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5140 0.8900 24 1 0.7095 1.1619 3.4844 25 1 1.0772 -2.5579 -0.7367 26 1 1.8959 -3.7222 -2.7447 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260768925.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:42 Heat of formation + Delta-G solvation = -95.273574 kcal Electronic energy + Delta-G solvation = -15475.983728 eV Core-core repulsion = 12408.693182 eV Total energy + Delta-G solvation = -3067.290546 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.032 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -50.55177 -49.62666 -40.33763 -37.51503 -36.15693 -33.24141 -31.65079 -29.71873 -27.16879 -24.63157 -24.19243 -21.76890 -19.06413 -18.75220 -18.15494 -17.58799 -17.42369 -16.66214 -16.07311 -15.90702 -15.53387 -15.24872 -14.79629 -14.31573 -13.89792 -13.61560 -13.30828 -12.86499 -12.80735 -12.65833 -12.30861 -12.19154 -12.11523 -11.96022 -11.39665 -10.91554 -10.39621 -9.86041 -9.53307 -8.06449 -6.19566 -0.17408 -0.07544 0.96868 1.44938 1.49121 1.58130 2.30370 2.49324 2.68574 3.22434 3.28418 3.59451 3.78998 4.13415 4.38901 4.69293 4.77066 4.95441 5.04559 5.21362 5.22215 5.32820 5.64835 5.69389 5.96391 6.09030 6.32554 6.88464 7.48208 8.98490 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.028465 B = 0.007849 C = 0.006993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.417127 B = 3566.671278 C = 4002.836079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.061 3.939 3 H 0.031 0.969 4 C -0.519 4.519 5 H 0.059 0.941 6 C 0.020 3.980 7 N -0.914 5.914 8 Si 0.950 3.050 9 H -0.265 1.265 10 H -0.288 1.288 11 H -0.280 1.280 12 C -0.024 4.024 13 C -0.081 4.081 14 C -0.099 4.099 15 C 0.053 3.947 16 F -0.129 7.129 17 C 0.061 3.939 18 F -0.129 7.129 19 C -0.072 4.072 20 Cl -0.049 7.049 21 H 0.024 0.976 22 H 0.044 0.956 23 H 0.062 0.938 24 H 0.261 0.739 25 H 0.161 0.839 26 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.265 -5.734 -8.960 10.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.043 3.957 3 H 0.049 0.951 4 C -0.557 4.557 5 H 0.078 0.922 6 C -0.179 4.179 7 N -0.553 5.553 8 Si 0.777 3.223 9 H -0.190 1.190 10 H -0.214 1.214 11 H -0.206 1.206 12 C -0.025 4.025 13 C -0.099 4.099 14 C -0.118 4.118 15 C 0.033 3.967 16 F -0.107 7.107 17 C 0.040 3.960 18 F -0.108 7.108 19 C -0.100 4.100 20 Cl -0.020 7.020 21 H 0.043 0.957 22 H 0.063 0.937 23 H 0.080 0.920 24 H 0.070 0.930 25 H 0.179 0.821 26 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 1.278 -5.465 -8.889 10.513 hybrid contribution 0.655 0.317 0.592 0.938 sum 1.932 -5.148 -8.297 9.954 Atomic orbital electron populations 1.21663 0.96488 1.00109 0.99978 1.17984 0.93755 0.95718 0.88254 0.95085 1.21345 1.31286 1.12513 0.90531 0.92236 1.25609 0.95211 0.95577 1.01548 1.70008 1.37467 1.23876 1.23937 0.85617 0.78147 0.78740 0.79823 1.18959 1.21444 1.20569 1.20485 0.92457 0.94989 0.94615 1.21184 0.99219 0.92566 0.96934 1.21478 0.95779 1.02442 0.92073 1.17432 1.02739 0.88891 0.87635 1.91503 1.87970 1.80991 1.50280 1.17413 0.98209 0.90666 0.89736 1.91492 1.72279 1.80822 1.66197 1.20806 1.04360 0.88238 0.96570 1.98349 1.92167 1.15455 1.95987 0.95735 0.93684 0.91959 0.92974 0.82142 0.79619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.47 8.78 71.98 0.63 -4.84 15 2 C 0.06 2.82 2.38 -12.28 -0.03 2.79 15 3 H 0.03 1.58 6.16 -2.39 -0.01 1.56 15 4 C -0.52 -25.95 8.24 25.60 0.21 -25.74 15 5 H 0.06 2.91 7.60 -2.91 -0.02 2.89 15 6 C 0.02 1.02 5.30 84.66 0.45 1.47 15 7 N -0.91 -49.69 11.32 21.45 0.24 -49.45 15 8 Si 0.95 41.09 29.54 68.60 2.03 43.12 15 9 H -0.27 -11.06 7.11 99.48 0.71 -10.36 15 10 H -0.29 -12.59 7.11 99.48 0.71 -11.89 15 11 H -0.28 -11.86 7.11 99.48 0.71 -11.15 15 12 C -0.02 -0.94 4.74 -19.84 -0.09 -1.04 15 13 C -0.08 -2.53 8.70 22.27 0.19 -2.33 15 14 C -0.10 -2.54 10.02 22.31 0.22 -2.32 15 15 C 0.05 1.58 7.31 22.41 0.16 1.74 15 16 F -0.13 -3.66 17.18 44.97 0.77 -2.89 15 17 C 0.06 2.07 7.28 22.43 0.16 2.23 15 18 F -0.13 -4.44 16.75 44.97 0.75 -3.69 15 19 C -0.07 -2.70 6.32 22.35 0.14 -2.56 15 20 Cl -0.05 -1.85 26.66 -2.72 -0.07 -1.93 15 21 H 0.02 0.96 8.14 -2.39 -0.02 0.94 15 22 H 0.04 1.79 7.39 -2.39 -0.02 1.77 15 23 H 0.06 3.10 6.07 -2.38 -0.01 3.08 15 24 H 0.26 13.59 8.31 -92.71 -0.77 12.82 15 25 H 0.16 4.67 7.57 -2.91 -0.02 4.65 15 26 H 0.19 3.18 8.06 -2.91 -0.02 3.16 15 Total: -1.00 -54.93 251.15 6.99 -47.94 By element: Atomic # 1 Polarization: -3.72 SS G_CDS: 1.22 Total: -2.50 kcal Atomic # 6 Polarization: -32.65 SS G_CDS: 2.05 Total: -30.60 kcal Atomic # 7 Polarization: -49.69 SS G_CDS: 0.24 Total: -49.45 kcal Atomic # 9 Polarization: -8.10 SS G_CDS: 1.53 Total: -6.58 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 2.03 Total: 43.12 kcal Atomic # 17 Polarization: -1.85 SS G_CDS: -0.07 Total: -1.93 kcal Total: -54.93 6.99 -47.94 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260768925.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.334 kcal (2) G-P(sol) polarization free energy of solvation -54.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds