Wall clock time and date at job start Mon Mar 30 2020 05:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46917 * 2 1 4 4 C 1.50694 * 109.47566 * 239.99734 * 2 1 3 5 5 H 1.07996 * 120.00486 * 240.00693 * 4 2 1 6 6 C 1.37877 * 119.99515 * 59.99894 * 4 2 1 7 7 N 1.31511 * 120.00658 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99624 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47040 * 60.00445 * 8 6 4 10 10 H 1.48500 * 109.46774 * 180.02562 * 8 6 4 11 11 H 1.48493 * 109.47136 * 300.00279 * 8 6 4 12 12 C 1.50705 * 109.47015 * 119.99545 * 2 1 3 13 13 C 1.38251 * 119.96924 * 60.27699 * 12 2 1 14 14 C 1.38208 * 120.08141 * 180.27741 * 13 12 2 15 15 C 1.38428 * 120.02158 * 359.72504 * 14 13 12 16 16 F 1.35099 * 120.02815 * 179.97438 * 15 14 13 17 17 C 1.38618 * 119.94601 * 0.02562 * 15 14 13 18 18 F 1.35091 * 120.04408 * 179.97438 * 17 15 14 19 19 C 1.38311 * 119.97183 * 240.00212 * 12 2 1 20 20 Cl 1.73599 * 120.01583 * 359.97438 * 19 12 2 21 21 H 1.09002 * 109.46614 * 60.00015 * 1 2 3 22 22 H 1.08994 * 109.46966 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47225 * 300.00149 * 1 2 3 24 24 H 0.96997 * 120.00620 * 179.97438 * 7 6 4 25 25 H 1.08001 * 119.95974 * 0.02562 * 13 12 2 26 26 H 1.08005 * 119.99225 * 179.70668 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4826 7 7 0.9437 0.8301 -2.6034 8 14 2.3216 -1.1204 -4.0078 9 1 1.8260 -2.5203 -4.0076 10 1 1.8272 -0.4200 -5.2203 11 1 3.8065 -1.1210 -4.0079 12 6 2.0324 -0.7103 1.2306 13 6 1.7027 -2.0356 1.4459 14 6 2.1574 -2.6876 2.5765 15 6 2.9486 -2.0158 3.4924 16 9 3.3927 -2.6529 4.5979 17 6 3.2840 -0.6885 3.2749 18 9 4.0556 -0.0309 4.1677 19 6 2.8275 -0.0375 2.1406 20 17 3.2472 1.6243 1.8651 21 1 -0.3632 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 0.7096 1.1617 -3.4844 25 1 1.0858 -2.5608 0.7318 26 1 1.8950 -3.7216 2.7457 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260768926.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:44 Heat of formation + Delta-G solvation = -95.147919 kcal Electronic energy + Delta-G solvation = -15475.707936 eV Core-core repulsion = 12408.422839 eV Total energy + Delta-G solvation = -3067.285097 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.032 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -50.55329 -49.62774 -40.33728 -37.51558 -36.15465 -33.23888 -31.65077 -29.71926 -27.16419 -24.63017 -24.19270 -21.76694 -19.06333 -18.75047 -18.15542 -17.57901 -17.42541 -16.66423 -16.07360 -15.90779 -15.53600 -15.24958 -14.78712 -14.31454 -13.89485 -13.61761 -13.29664 -12.85505 -12.79609 -12.64245 -12.35551 -12.19207 -12.12075 -11.95054 -11.39480 -10.92947 -10.38310 -9.86038 -9.53368 -8.05866 -6.19257 -0.17447 -0.07558 0.96883 1.47796 1.49411 1.55637 2.30436 2.49602 2.68574 3.22688 3.28487 3.59394 3.79025 4.13402 4.38925 4.69292 4.77104 4.95478 5.04561 5.21514 5.22258 5.32765 5.64652 5.69333 5.96479 6.09130 6.32739 6.88297 7.48417 8.98635 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.028489 B = 0.007848 C = 0.006991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.595461 B = 3567.150696 C = 4004.426311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.062 3.938 3 H 0.031 0.969 4 C -0.521 4.521 5 H 0.059 0.941 6 C 0.021 3.979 7 N -0.913 5.913 8 Si 0.950 3.050 9 H -0.265 1.265 10 H -0.289 1.289 11 H -0.278 1.278 12 C -0.025 4.025 13 C -0.081 4.081 14 C -0.099 4.099 15 C 0.053 3.947 16 F -0.129 7.129 17 C 0.061 3.939 18 F -0.129 7.129 19 C -0.072 4.072 20 Cl -0.049 7.049 21 H 0.062 0.938 22 H 0.044 0.956 23 H 0.023 0.977 24 H 0.261 0.739 25 H 0.161 0.839 26 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.246 -5.745 8.930 10.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.044 3.956 3 H 0.049 0.951 4 C -0.559 4.559 5 H 0.078 0.922 6 C -0.179 4.179 7 N -0.552 5.552 8 Si 0.776 3.224 9 H -0.190 1.190 10 H -0.215 1.215 11 H -0.203 1.203 12 C -0.026 4.026 13 C -0.099 4.099 14 C -0.118 4.118 15 C 0.033 3.967 16 F -0.107 7.107 17 C 0.040 3.960 18 F -0.108 7.108 19 C -0.100 4.100 20 Cl -0.020 7.020 21 H 0.081 0.919 22 H 0.063 0.937 23 H 0.043 0.957 24 H 0.070 0.930 25 H 0.178 0.822 26 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 1.252 -5.470 8.855 10.483 hybrid contribution 0.670 0.306 -0.578 0.936 sum 1.923 -5.164 8.277 9.943 Atomic orbital electron populations 1.21663 0.96499 1.00093 0.99976 1.17974 0.93737 0.95701 0.88231 0.95111 1.21287 1.31463 1.12614 0.90559 0.92231 1.25609 0.95177 0.95566 1.01531 1.69993 1.37354 1.23839 1.24063 0.85733 0.78520 0.79145 0.78996 1.19008 1.21474 1.20322 1.20489 0.92419 0.94984 0.94664 1.21182 0.99232 0.92552 0.96919 1.21475 0.95781 1.02467 0.92047 1.17432 1.02791 0.88849 0.87618 1.91505 1.87998 1.81014 1.50229 1.17412 0.98403 0.90621 0.89591 1.91488 1.72584 1.80724 1.65991 1.20808 1.04402 0.88270 0.96497 1.98349 1.92129 1.15506 1.95977 0.91946 0.93707 0.95745 0.92960 0.82158 0.79616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.48 8.79 71.98 0.63 -4.84 15 2 C 0.06 2.85 2.37 -12.28 -0.03 2.82 15 3 H 0.03 1.57 6.16 -2.39 -0.01 1.55 15 4 C -0.52 -26.08 8.23 25.60 0.21 -25.87 15 5 H 0.06 2.90 7.59 -2.91 -0.02 2.88 15 6 C 0.02 1.06 5.30 84.66 0.45 1.51 15 7 N -0.91 -49.71 11.32 21.45 0.24 -49.47 15 8 Si 0.95 41.03 29.54 68.60 2.03 43.05 15 9 H -0.27 -10.91 7.11 99.48 0.71 -10.20 15 10 H -0.29 -12.49 7.11 99.48 0.71 -11.78 15 11 H -0.28 -11.95 7.11 99.48 0.71 -11.24 15 12 C -0.02 -0.95 4.74 -19.84 -0.09 -1.04 15 13 C -0.08 -2.52 8.70 22.27 0.19 -2.33 15 14 C -0.10 -2.54 10.02 22.31 0.22 -2.31 15 15 C 0.05 1.58 7.31 22.41 0.16 1.74 15 16 F -0.13 -3.66 17.18 44.97 0.77 -2.89 15 17 C 0.06 2.07 7.28 22.43 0.16 2.23 15 18 F -0.13 -4.44 16.75 44.97 0.75 -3.69 15 19 C -0.07 -2.71 6.32 22.36 0.14 -2.57 15 20 Cl -0.05 -1.86 26.66 -2.72 -0.07 -1.93 15 21 H 0.06 3.10 6.07 -2.39 -0.01 3.09 15 22 H 0.04 1.78 7.40 -2.39 -0.02 1.77 15 23 H 0.02 0.96 8.14 -2.38 -0.02 0.94 15 24 H 0.26 13.69 8.31 -92.71 -0.77 12.92 15 25 H 0.16 4.68 7.58 -2.91 -0.02 4.66 15 26 H 0.19 3.18 8.06 -2.91 -0.02 3.16 15 Total: -1.00 -54.84 251.16 6.99 -47.85 By element: Atomic # 1 Polarization: -3.48 SS G_CDS: 1.22 Total: -2.27 kcal Atomic # 6 Polarization: -32.71 SS G_CDS: 2.05 Total: -30.66 kcal Atomic # 7 Polarization: -49.71 SS G_CDS: 0.24 Total: -49.47 kcal Atomic # 9 Polarization: -8.10 SS G_CDS: 1.53 Total: -6.58 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 2.03 Total: 43.05 kcal Atomic # 17 Polarization: -1.86 SS G_CDS: -0.07 Total: -1.93 kcal Total: -54.84 6.99 -47.85 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260768926.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.298 kcal (2) G-P(sol) polarization free energy of solvation -54.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds