Wall clock time and date at job start Mon Mar 30 2020 05:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 120.00046 * 2 1 4 4 H 1.48501 * 109.47113 * 270.00175 * 3 2 1 5 5 H 1.48499 * 109.46981 * 30.00312 * 3 2 1 6 6 H 1.48500 * 109.46794 * 150.00087 * 3 2 1 7 7 C 1.37879 * 120.00260 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99714 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00182 * 180.02562 * 7 2 1 10 10 C 1.50703 * 109.46637 * 180.02562 * 9 7 2 11 11 C 1.38243 * 119.99233 * 265.24563 * 10 9 7 12 12 C 1.38324 * 119.98397 * 180.32278 * 11 10 9 13 13 Cl 1.73601 * 120.01379 * 179.72966 * 12 11 10 14 14 C 1.38380 * 119.97631 * 359.70467 * 12 11 10 15 15 C 1.38191 * 119.98278 * 0.02562 * 14 12 11 16 16 C 1.38221 * 119.99504 * 85.00153 * 10 9 7 17 17 C 1.50703 * 119.98565 * 359.97301 * 16 10 9 18 18 F 1.39904 * 109.46969 * 59.72645 * 17 16 10 19 19 F 1.39901 * 109.47086 * 299.73049 * 17 16 10 20 20 H 0.96994 * 119.99708 * 359.97438 * 1 2 3 21 21 H 1.08993 * 109.47300 * 59.99889 * 9 7 2 22 22 H 1.09001 * 109.46595 * 299.99908 * 9 7 2 23 23 H 1.07997 * 120.00259 * 0.04903 * 11 10 9 24 24 H 1.07995 * 120.00876 * 179.97438 * 14 12 11 25 25 H 1.08003 * 119.99063 * 180.02562 * 15 14 12 26 26 H 1.09002 * 109.47152 * 179.72716 * 17 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0139 -2.6149 -0.0013 11 6 4.3373 -3.2347 1.1913 12 6 4.8046 -4.5366 1.1893 13 17 5.2176 -5.3133 2.6859 14 6 4.9423 -5.2199 -0.0062 15 6 4.6134 -4.6011 -1.1972 16 6 4.1463 -3.2998 -1.1946 17 6 3.7877 -2.6256 -2.4938 18 9 4.5818 -1.4862 -2.6626 19 9 2.4390 -2.2547 -2.4701 20 1 -0.4849 0.8400 0.0004 21 1 3.8746 -0.6808 0.8904 22 1 3.8752 -0.6796 -0.8895 23 1 4.2293 -2.7010 2.1239 24 1 5.3075 -6.2363 -0.0084 25 1 4.7204 -5.1344 -2.1302 26 1 3.9606 -3.3146 -3.3206 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260828082.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:53 Heat of formation + Delta-G solvation = -89.659092 kcal Electronic energy + Delta-G solvation = -15689.102014 eV Core-core repulsion = 12622.054931 eV Total energy + Delta-G solvation = -3067.047084 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.032 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.30335 -46.19393 -39.14270 -36.37605 -33.52788 -31.64343 -31.40741 -28.02220 -25.42228 -23.21612 -21.84785 -20.32111 -17.02601 -16.92658 -16.77908 -16.44627 -15.86822 -14.78563 -14.32963 -14.01367 -13.38541 -13.10578 -13.02211 -12.77536 -12.52104 -12.21191 -11.82574 -11.66425 -11.53732 -11.24903 -10.91551 -10.66306 -10.22833 -10.08323 -10.03203 -9.37417 -8.61714 -8.53722 -8.24075 -6.03807 -4.01688 1.26130 1.61489 2.26665 3.32296 3.39003 3.41298 3.82758 4.25847 4.44680 4.58072 4.98486 5.08875 5.23838 5.30288 5.54456 5.66292 5.76982 5.89109 6.21686 6.34194 6.46913 6.61218 6.90646 7.07699 7.27385 7.65602 8.48096 8.99699 9.55698 11.09190 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.023520 B = 0.008723 C = 0.007199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.214601 B = 3209.183229 C = 3888.736871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.075 3.925 3 Si 0.871 3.129 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.500 4.500 8 H 0.075 0.925 9 C -0.002 4.002 10 C 0.024 3.976 11 C -0.118 4.118 12 C -0.013 4.013 13 Cl -0.081 7.081 14 C -0.142 4.142 15 C -0.076 4.076 16 C -0.173 4.173 17 C 0.318 3.682 18 F -0.203 7.203 19 F -0.170 7.170 20 H 0.264 0.736 21 H 0.032 0.968 22 H 0.042 0.958 23 H 0.136 0.864 24 H 0.131 0.869 25 H 0.131 0.869 26 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.907 -8.991 -1.918 14.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.127 4.127 3 Si 0.698 3.302 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.538 4.538 8 H 0.093 0.907 9 C -0.039 4.039 10 C 0.024 3.976 11 C -0.136 4.136 12 C -0.039 4.039 13 Cl -0.052 7.052 14 C -0.160 4.160 15 C -0.095 4.095 16 C -0.174 4.174 17 C 0.264 3.736 18 F -0.185 7.185 19 F -0.150 7.150 20 H 0.074 0.926 21 H 0.050 0.950 22 H 0.060 0.940 23 H 0.154 0.846 24 H 0.149 0.851 25 H 0.149 0.851 26 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 10.761 -8.897 -1.788 14.076 hybrid contribution 0.298 0.873 0.190 0.942 sum 11.059 -8.024 -1.598 13.756 Atomic orbital electron populations 1.69879 1.06156 1.26842 1.50714 1.24875 0.94649 0.98684 0.94494 0.86911 0.80395 0.84089 0.78809 1.19984 1.21243 1.19025 1.20697 0.87184 0.94812 1.51113 0.90652 1.19129 0.98403 0.87524 0.98838 1.20173 0.88869 0.98127 0.90479 1.21023 1.00339 0.92942 0.99315 1.21012 1.02159 0.93995 0.86772 1.98344 1.92142 1.81029 1.33693 1.20756 1.04361 1.00322 0.90600 1.20754 0.97438 0.93383 0.97903 1.20416 1.05731 0.95846 0.95394 1.20123 0.74661 0.83196 0.95644 1.92942 1.74345 1.54876 1.96309 1.93203 1.32146 1.92340 1.97357 0.92645 0.94958 0.94036 0.84580 0.85141 0.85105 0.87973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.52 13.96 55.43 0.77 -26.74 15 2 C 0.07 2.16 5.47 -17.82 -0.10 2.06 15 3 Si 0.87 21.64 27.47 -169.99 -4.67 16.97 15 4 H -0.27 -6.78 7.11 56.52 0.40 -6.37 15 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 15 6 H -0.27 -6.30 6.54 56.52 0.37 -5.93 15 7 C -0.50 -13.98 7.75 -34.44 -0.27 -14.24 15 8 H 0.08 2.32 7.98 -52.49 -0.42 1.90 15 9 C 0.00 -0.05 3.53 -29.03 -0.10 -0.15 15 10 C 0.02 0.49 5.04 -104.63 -0.53 -0.04 15 11 C -0.12 -2.14 9.47 -39.55 -0.37 -2.52 15 12 C -0.01 -0.20 6.32 -39.50 -0.25 -0.45 15 13 Cl -0.08 -1.12 28.96 -51.86 -1.50 -2.62 15 14 C -0.14 -1.97 9.83 -39.55 -0.39 -2.35 15 15 C -0.08 -1.07 9.67 -39.59 -0.38 -1.46 15 16 C -0.17 -3.06 5.37 -104.62 -0.56 -3.63 15 17 C 0.32 5.53 4.97 36.01 0.18 5.71 15 18 F -0.20 -3.84 15.32 2.25 0.03 -3.80 15 19 F -0.17 -3.75 14.95 2.25 0.03 -3.71 15 20 H 0.26 7.59 8.31 -40.82 -0.34 7.25 15 21 H 0.03 0.76 7.11 -51.93 -0.37 0.39 15 22 H 0.04 1.00 5.16 -51.93 -0.27 0.74 15 23 H 0.14 2.41 8.06 -52.49 -0.42 1.99 15 24 H 0.13 1.44 8.06 -52.49 -0.42 1.02 15 25 H 0.13 1.33 7.95 -52.48 -0.42 0.91 15 26 H 0.10 1.25 7.88 -51.93 -0.41 0.84 15 LS Contribution 249.33 15.07 3.76 3.76 Total: -1.00 -30.90 249.33 -6.24 -37.14 By element: Atomic # 1 Polarization: -2.02 SS G_CDS: -1.89 Total: -3.92 kcal Atomic # 6 Polarization: -14.30 SS G_CDS: -2.77 Total: -17.07 kcal Atomic # 7 Polarization: -27.52 SS G_CDS: 0.77 Total: -26.74 kcal Atomic # 9 Polarization: -7.58 SS G_CDS: 0.07 Total: -7.52 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -1.50 Total: -2.62 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -30.90 -6.24 -37.14 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260828082.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.520 kcal (2) G-P(sol) polarization free energy of solvation -30.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds