Wall clock time and date at job start Mon Mar 30 2020 05:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 120.00046 * 2 1 4 4 H 1.48501 * 109.47113 * 270.00175 * 3 2 1 5 5 H 1.48499 * 109.46981 * 30.00312 * 3 2 1 6 6 H 1.48500 * 109.46794 * 150.00087 * 3 2 1 7 7 C 1.37879 * 120.00260 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99714 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00182 * 180.02562 * 7 2 1 10 10 C 1.50703 * 109.46637 * 180.02562 * 9 7 2 11 11 C 1.38243 * 119.99233 * 265.24563 * 10 9 7 12 12 C 1.38324 * 119.98397 * 180.32278 * 11 10 9 13 13 Cl 1.73601 * 120.01379 * 179.72966 * 12 11 10 14 14 C 1.38380 * 119.97631 * 359.70467 * 12 11 10 15 15 C 1.38191 * 119.98278 * 0.02562 * 14 12 11 16 16 C 1.38221 * 119.99504 * 85.00153 * 10 9 7 17 17 C 1.50703 * 119.98565 * 359.97301 * 16 10 9 18 18 F 1.39904 * 109.46969 * 59.72645 * 17 16 10 19 19 F 1.39901 * 109.47086 * 299.73049 * 17 16 10 20 20 H 0.96994 * 119.99708 * 359.97438 * 1 2 3 21 21 H 1.08993 * 109.47300 * 59.99889 * 9 7 2 22 22 H 1.09001 * 109.46595 * 299.99908 * 9 7 2 23 23 H 1.07997 * 120.00259 * 0.04903 * 11 10 9 24 24 H 1.07995 * 120.00876 * 179.97438 * 14 12 11 25 25 H 1.08003 * 119.99063 * 180.02562 * 15 14 12 26 26 H 1.09002 * 109.47152 * 179.72716 * 17 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0139 -2.6149 -0.0013 11 6 4.3373 -3.2347 1.1913 12 6 4.8046 -4.5366 1.1893 13 17 5.2176 -5.3133 2.6859 14 6 4.9423 -5.2199 -0.0062 15 6 4.6134 -4.6011 -1.1972 16 6 4.1463 -3.2998 -1.1946 17 6 3.7877 -2.6256 -2.4938 18 9 4.5818 -1.4862 -2.6626 19 9 2.4390 -2.2547 -2.4701 20 1 -0.4849 0.8400 0.0004 21 1 3.8746 -0.6808 0.8904 22 1 3.8752 -0.6796 -0.8895 23 1 4.2293 -2.7010 2.1239 24 1 5.3075 -6.2363 -0.0084 25 1 4.7204 -5.1344 -2.1302 26 1 3.9606 -3.3146 -3.3206 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260828082.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:53 Heat of formation + Delta-G solvation = -107.903957 kcal Electronic energy + Delta-G solvation = -15689.893171 eV Core-core repulsion = 12622.054931 eV Total energy + Delta-G solvation = -3067.838241 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.032 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.74515 -47.69206 -40.42838 -37.55359 -35.41193 -33.42313 -32.70049 -29.73401 -26.80729 -24.93367 -23.23097 -21.80187 -18.98987 -18.36144 -18.23698 -17.90446 -17.19059 -16.27382 -16.10889 -15.40567 -14.90996 -14.63546 -14.39126 -14.32912 -14.04706 -13.99051 -13.55001 -13.10301 -13.01744 -12.58334 -12.56274 -12.17812 -11.91684 -11.69997 -11.65587 -11.39528 -10.75102 -9.87125 -9.62385 -8.26510 -6.27666 -0.00860 0.34929 1.07604 1.33861 1.34694 1.44790 2.34947 2.53934 3.00823 3.08164 3.40279 3.70359 3.93321 4.03377 4.27657 4.29676 4.52232 4.59336 4.85860 4.96734 5.05394 5.15644 5.25199 5.54071 5.63731 5.78667 6.25939 6.73896 7.32561 8.90295 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.023520 B = 0.008723 C = 0.007199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.214601 B = 3209.183229 C = 3888.736871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.014 3.986 3 Si 0.934 3.066 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.248 1.248 7 C -0.491 4.491 8 H 0.032 0.968 9 C 0.005 3.995 10 C -0.017 4.017 11 C -0.135 4.135 12 C -0.017 4.017 13 Cl -0.064 7.064 14 C -0.127 4.127 15 C -0.060 4.060 16 C -0.187 4.187 17 C 0.303 3.697 18 F -0.215 7.215 19 F -0.205 7.205 20 H 0.265 0.735 21 H 0.029 0.971 22 H 0.038 0.962 23 H 0.127 0.873 24 H 0.170 0.830 25 H 0.183 0.817 26 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.178 -10.619 -2.669 17.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.183 4.183 3 Si 0.758 3.242 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.172 1.172 7 C -0.529 4.529 8 H 0.050 0.950 9 C -0.032 4.032 10 C -0.018 4.018 11 C -0.154 4.154 12 C -0.044 4.044 13 Cl -0.035 7.035 14 C -0.145 4.145 15 C -0.078 4.078 16 C -0.188 4.188 17 C 0.250 3.750 18 F -0.197 7.197 19 F -0.187 7.187 20 H 0.074 0.926 21 H 0.048 0.952 22 H 0.056 0.944 23 H 0.145 0.855 24 H 0.188 0.812 25 H 0.200 0.800 26 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 13.056 -10.535 -2.530 16.966 hybrid contribution -0.374 1.190 0.452 1.327 sum 12.682 -9.345 -2.078 15.890 Atomic orbital electron populations 1.70029 1.07985 1.27848 1.52922 1.25755 0.95442 1.02627 0.94503 0.85900 0.79722 0.79467 0.79136 1.19527 1.20622 1.17209 1.20838 0.89634 0.92950 1.49493 0.94963 1.18891 0.95393 0.90686 0.98241 1.19976 0.92154 0.96935 0.92722 1.20971 1.01616 0.94428 0.98379 1.21128 1.01593 0.93250 0.88418 1.98351 1.91880 1.80364 1.32904 1.21286 1.02087 1.01632 0.89530 1.21271 0.94734 0.91607 1.00151 1.20653 1.06257 0.97461 0.94440 1.20928 0.72619 0.83543 0.97900 1.92905 1.74428 1.55937 1.96413 1.93125 1.35132 1.92788 1.97616 0.92578 0.95249 0.94422 0.85523 0.81227 0.80014 0.81692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.31 13.96 21.45 0.30 -60.01 15 2 C 0.01 0.81 5.47 84.66 0.46 1.27 15 3 Si 0.93 45.44 27.47 68.60 1.88 47.33 15 4 H -0.27 -12.86 7.11 99.48 0.71 -12.16 15 5 H -0.28 -13.28 7.11 99.48 0.71 -12.57 15 6 H -0.25 -11.27 6.54 99.48 0.65 -10.62 15 7 C -0.49 -28.55 7.75 25.60 0.20 -28.35 15 8 H 0.03 2.09 7.98 -2.91 -0.02 2.07 15 9 C 0.00 0.24 3.53 29.10 0.10 0.34 15 10 C -0.02 -0.71 5.04 -19.87 -0.10 -0.81 15 11 C -0.14 -4.90 9.47 22.29 0.21 -4.69 15 12 C -0.02 -0.50 6.32 22.32 0.14 -0.36 15 13 Cl -0.06 -1.62 28.96 -2.72 -0.08 -1.70 15 14 C -0.13 -2.97 9.83 22.29 0.22 -2.75 15 15 C -0.06 -1.41 9.67 22.26 0.22 -1.19 15 16 C -0.19 -6.28 5.37 -19.86 -0.11 -6.38 15 17 C 0.30 10.00 4.97 71.24 0.35 10.36 15 18 F -0.22 -7.90 15.32 44.97 0.69 -7.21 15 19 F -0.21 -9.17 14.95 44.97 0.67 -8.50 15 20 H 0.27 15.81 8.31 -92.71 -0.77 15.03 15 21 H 0.03 1.40 7.11 -2.39 -0.02 1.39 15 22 H 0.04 1.84 5.16 -2.39 -0.01 1.83 15 23 H 0.13 4.63 8.06 -2.91 -0.02 4.60 15 24 H 0.17 2.68 8.06 -2.91 -0.02 2.66 15 25 H 0.18 2.41 7.95 -2.91 -0.02 2.39 15 26 H 0.17 3.31 7.88 -2.39 -0.02 3.29 15 Total: -1.00 -71.05 249.33 6.32 -64.73 By element: Atomic # 1 Polarization: -3.24 SS G_CDS: 1.15 Total: -2.09 kcal Atomic # 6 Polarization: -34.25 SS G_CDS: 1.70 Total: -32.56 kcal Atomic # 7 Polarization: -60.31 SS G_CDS: 0.30 Total: -60.01 kcal Atomic # 9 Polarization: -17.07 SS G_CDS: 1.36 Total: -15.71 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 1.88 Total: 47.33 kcal Atomic # 17 Polarization: -1.62 SS G_CDS: -0.08 Total: -1.70 kcal Total: -71.05 6.32 -64.73 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260828082.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.170 kcal (2) G-P(sol) polarization free energy of solvation -71.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds