Wall clock time and date at job start Mon Mar 30 2020 05:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.38264 * 119.98795 * 264.99652 * 10 9 7 12 12 C 1.38223 * 120.02168 * 180.02562 * 11 10 9 13 13 C 1.38237 * 120.01451 * 359.97230 * 12 11 10 14 14 C 1.38328 * 119.98774 * 0.02562 * 13 12 11 15 15 Cl 1.73598 * 120.01691 * 180.02562 * 14 13 12 16 16 C 1.38185 * 119.99369 * 84.72362 * 10 9 7 17 17 C 1.50697 * 120.00743 * 0.02562 * 16 10 9 18 18 F 1.39896 * 109.47419 * 300.00090 * 17 16 10 19 19 F 1.39901 * 109.47167 * 60.00605 * 17 16 10 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 22 22 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 23 23 H 1.07998 * 119.99213 * 359.97438 * 11 10 9 24 24 H 1.07998 * 119.99295 * 180.02562 * 12 11 10 25 25 H 1.08004 * 120.00361 * 179.97438 * 13 12 11 26 26 H 1.09004 * 109.46945 * 179.97438 * 17 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.6000 -4.2325 -1.2059 12 6 3.4978 -5.2835 -1.2113 13 6 4.0268 -5.7470 -0.0213 14 6 3.6572 -5.1593 1.1751 15 17 4.3216 -5.7404 2.6699 16 6 2.7626 -4.1035 1.1794 17 6 2.3637 -3.4590 2.4818 18 9 2.7102 -2.1039 2.4570 19 9 0.9817 -3.5838 2.6599 20 1 -0.4850 0.8401 -0.0004 21 1 0.6242 -2.5609 0.8844 22 1 0.6244 -2.5529 -0.8956 23 1 2.1867 -3.8709 -2.1359 24 1 3.7866 -5.7420 -2.1455 25 1 4.7279 -6.5686 -0.0257 26 1 2.8816 -3.9518 3.3047 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260843825.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:57 Heat of formation + Delta-G solvation = -91.849370 kcal Electronic energy + Delta-G solvation = -15831.246992 eV Core-core repulsion = 12764.104931 eV Total energy + Delta-G solvation = -3067.142061 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.032 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -48.17417 -46.08554 -39.07216 -36.45211 -33.51530 -31.75200 -31.03578 -27.48990 -25.41829 -23.36440 -21.76491 -20.43176 -17.10371 -16.79778 -16.40060 -16.29671 -15.64429 -14.62513 -14.47560 -14.20980 -13.36881 -12.99595 -12.87429 -12.49883 -12.33826 -12.13453 -11.65655 -11.44886 -11.44506 -11.11650 -11.02602 -10.62159 -10.56914 -10.02364 -9.61738 -9.42537 -8.62396 -8.37721 -8.14328 -6.00895 -4.02432 1.35187 1.64520 2.17786 3.33451 3.39833 3.45220 3.92839 4.33344 4.49048 4.70565 5.00926 5.27830 5.35156 5.43113 5.61992 5.75398 5.82545 5.91434 6.29284 6.45718 6.68144 6.77106 7.16436 7.50136 7.64351 7.93285 8.26876 8.98242 9.59463 11.09872 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.028140 B = 0.008606 C = 0.007761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.783116 B = 3252.604577 C = 3606.779188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.061 3.939 3 Si 0.894 3.106 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.499 4.499 8 H 0.057 0.943 9 C 0.032 3.968 10 C 0.018 3.982 11 C -0.124 4.124 12 C -0.091 4.091 13 C -0.144 4.144 14 C -0.004 4.004 15 Cl -0.080 7.080 16 C -0.171 4.171 17 C 0.316 3.684 18 F -0.173 7.173 19 F -0.197 7.197 20 H 0.261 0.739 21 H 0.049 0.951 22 H 0.034 0.966 23 H 0.132 0.868 24 H 0.128 0.872 25 H 0.129 0.871 26 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.812 -10.929 1.732 12.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.140 4.140 3 Si 0.722 3.278 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.537 4.537 8 H 0.075 0.925 9 C -0.005 4.005 10 C 0.017 3.983 11 C -0.142 4.142 12 C -0.109 4.109 13 C -0.162 4.162 14 C -0.031 4.031 15 Cl -0.051 7.051 16 C -0.173 4.173 17 C 0.262 3.738 18 F -0.154 7.154 19 F -0.179 7.179 20 H 0.071 0.929 21 H 0.067 0.933 22 H 0.052 0.948 23 H 0.150 0.850 24 H 0.146 0.854 25 H 0.147 0.853 26 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 6.691 -10.824 1.886 12.864 hybrid contribution 0.488 0.931 0.085 1.054 sum 7.179 -9.893 1.971 12.381 Atomic orbital electron populations 1.69955 1.05992 1.26758 1.50556 1.24919 0.94820 0.99094 0.95172 0.86543 0.80011 0.83246 0.77988 1.20733 1.21174 1.19705 1.20848 0.92805 0.89176 1.50841 0.92464 1.18693 0.92648 0.89183 0.99967 1.20672 0.93677 0.93681 0.90245 1.21285 0.98317 0.96066 0.98532 1.21155 0.96193 0.96361 0.97218 1.20764 1.02879 1.01977 0.90618 1.20648 0.98326 0.97042 0.87092 1.98330 1.84753 1.87935 1.34083 1.20130 1.01931 0.98692 0.96505 1.20155 0.77715 0.80299 0.95587 1.93142 1.91437 1.33455 1.97368 1.92960 1.32906 1.95860 1.96136 0.92886 0.93305 0.94764 0.85022 0.85389 0.85277 0.87936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.53 13.29 55.43 0.74 -25.79 15 2 C 0.06 1.74 5.46 -17.82 -0.10 1.65 15 3 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 15 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 5 H -0.29 -6.95 7.11 56.52 0.40 -6.54 15 6 H -0.27 -6.62 7.11 56.52 0.40 -6.22 15 7 C -0.50 -13.83 7.16 -34.44 -0.25 -14.08 15 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 15 9 C 0.03 0.81 4.46 -29.03 -0.13 0.68 15 10 C 0.02 0.38 5.04 -104.63 -0.53 -0.15 15 11 C -0.12 -2.20 9.68 -39.58 -0.38 -2.58 15 12 C -0.09 -1.31 10.05 -39.59 -0.40 -1.71 15 13 C -0.14 -2.06 9.83 -39.55 -0.39 -2.45 15 14 C 0.00 -0.07 6.31 -39.50 -0.25 -0.32 15 15 Cl -0.08 -1.11 27.01 -51.86 -1.40 -2.51 15 16 C -0.17 -3.34 5.37 -104.59 -0.56 -3.90 15 17 C 0.32 6.29 4.86 36.00 0.18 6.46 15 18 F -0.17 -4.03 14.90 2.25 0.03 -3.99 15 19 F -0.20 -4.24 15.35 2.25 0.03 -4.20 15 20 H 0.26 7.36 8.31 -40.82 -0.34 7.02 15 21 H 0.05 1.35 5.76 -51.93 -0.30 1.05 15 22 H 0.03 0.90 8.05 -51.93 -0.42 0.48 15 23 H 0.13 2.19 8.06 -52.49 -0.42 1.77 15 24 H 0.13 1.40 8.06 -52.49 -0.42 0.97 15 25 H 0.13 1.48 8.06 -52.48 -0.42 1.05 15 26 H 0.10 1.69 6.17 -51.93 -0.32 1.37 15 LS Contribution 249.84 15.07 3.76 3.76 Total: -1.00 -29.96 249.84 -6.51 -36.46 By element: Atomic # 1 Polarization: -2.34 SS G_CDS: -1.85 Total: -4.18 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: -2.81 Total: -16.42 kcal Atomic # 7 Polarization: -26.53 SS G_CDS: 0.74 Total: -25.79 kcal Atomic # 9 Polarization: -8.26 SS G_CDS: 0.07 Total: -8.19 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 17 Polarization: -1.11 SS G_CDS: -1.40 Total: -2.51 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -29.96 -6.51 -36.46 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260843825.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.387 kcal (2) G-P(sol) polarization free energy of solvation -29.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds