Wall clock time and date at job start Mon Mar 30 2020 05:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.38264 * 119.98795 * 264.99652 * 10 9 7 12 12 C 1.38223 * 120.02168 * 180.02562 * 11 10 9 13 13 C 1.38237 * 120.01451 * 359.97230 * 12 11 10 14 14 C 1.38328 * 119.98774 * 0.02562 * 13 12 11 15 15 Cl 1.73598 * 120.01691 * 180.02562 * 14 13 12 16 16 C 1.38185 * 119.99369 * 84.72362 * 10 9 7 17 17 C 1.50697 * 120.00743 * 0.02562 * 16 10 9 18 18 F 1.39896 * 109.47419 * 300.00090 * 17 16 10 19 19 F 1.39901 * 109.47167 * 60.00605 * 17 16 10 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 22 22 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 23 23 H 1.07998 * 119.99213 * 359.97438 * 11 10 9 24 24 H 1.07998 * 119.99295 * 180.02562 * 12 11 10 25 25 H 1.08004 * 120.00361 * 179.97438 * 13 12 11 26 26 H 1.09004 * 109.46945 * 179.97438 * 17 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.6000 -4.2325 -1.2059 12 6 3.4978 -5.2835 -1.2113 13 6 4.0268 -5.7470 -0.0213 14 6 3.6572 -5.1593 1.1751 15 17 4.3216 -5.7404 2.6699 16 6 2.7626 -4.1035 1.1794 17 6 2.3637 -3.4590 2.4818 18 9 2.7102 -2.1039 2.4570 19 9 0.9817 -3.5838 2.6599 20 1 -0.4850 0.8401 -0.0004 21 1 0.6242 -2.5609 0.8844 22 1 0.6244 -2.5529 -0.8956 23 1 2.1867 -3.8709 -2.1359 24 1 3.7866 -5.7420 -2.1455 25 1 4.7279 -6.5686 -0.0257 26 1 2.8816 -3.9518 3.3047 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260843825.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:57 Heat of formation + Delta-G solvation = -108.417578 kcal Electronic energy + Delta-G solvation = -15831.965444 eV Core-core repulsion = 12764.104931 eV Total energy + Delta-G solvation = -3067.860513 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.032 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.83751 -47.78815 -40.42276 -37.66578 -35.44131 -33.35854 -32.54434 -29.25751 -26.97631 -25.21544 -23.19559 -21.93943 -18.61725 -18.50038 -18.27706 -18.02999 -17.05980 -16.38853 -16.03991 -15.54228 -14.97123 -14.53798 -14.40497 -14.23641 -14.09382 -13.91026 -13.31183 -13.06852 -12.91432 -12.73571 -12.47206 -12.40871 -12.27159 -11.76063 -11.50602 -11.17453 -10.55536 -9.94983 -9.58295 -8.17237 -6.25548 0.03400 0.30548 0.94436 1.38195 1.40397 1.51309 2.40135 2.62521 2.87616 3.15631 3.25325 3.63338 3.97268 4.13978 4.16673 4.36459 4.47549 4.57797 4.91655 5.10621 5.18591 5.36626 5.39019 5.75735 5.79899 5.83091 6.16124 6.81979 7.39907 8.93650 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.028140 B = 0.008606 C = 0.007761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.783116 B = 3252.604577 C = 3606.779188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.006 3.994 3 Si 0.957 3.043 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.502 4.502 8 H 0.051 0.949 9 C 0.041 3.959 10 C -0.021 4.021 11 C -0.134 4.134 12 C -0.071 4.071 13 C -0.126 4.126 14 C -0.008 4.008 15 Cl -0.056 7.056 16 C -0.189 4.189 17 C 0.305 3.695 18 F -0.199 7.199 19 F -0.213 7.213 20 H 0.263 0.737 21 H 0.018 0.982 22 H 0.010 0.990 23 H 0.133 0.867 24 H 0.175 0.825 25 H 0.171 0.829 26 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.247 -12.572 1.194 15.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.191 4.191 3 Si 0.782 3.218 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.540 4.540 8 H 0.069 0.931 9 C 0.004 3.996 10 C -0.021 4.021 11 C -0.152 4.152 12 C -0.089 4.089 13 C -0.144 4.144 14 C -0.035 4.035 15 Cl -0.027 7.027 16 C -0.191 4.191 17 C 0.252 3.748 18 F -0.180 7.180 19 F -0.194 7.194 20 H 0.072 0.928 21 H 0.036 0.964 22 H 0.028 0.972 23 H 0.151 0.849 24 H 0.193 0.807 25 H 0.189 0.811 26 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 9.137 -12.478 1.347 15.524 hybrid contribution -0.216 1.294 0.277 1.341 sum 8.921 -11.184 1.624 14.398 Atomic orbital electron populations 1.70079 1.07531 1.27609 1.51990 1.25778 0.95631 1.02716 0.95013 0.85564 0.78652 0.79052 0.78558 1.19348 1.20837 1.19382 1.21096 0.92572 0.90549 1.49768 0.93065 1.18349 0.93109 0.90889 0.97207 1.20332 0.94984 0.94135 0.92679 1.21404 0.99357 0.97209 0.97265 1.21604 0.93714 0.94251 0.99341 1.21317 1.01935 1.01750 0.89431 1.20763 0.97515 0.96144 0.89047 1.98340 1.84131 1.87369 1.32825 1.20086 1.03438 1.00235 0.95336 1.20704 0.77164 0.79271 0.97673 1.93072 1.91583 1.35716 1.97598 1.92920 1.34356 1.95815 1.96303 0.92825 0.96411 0.97160 0.84862 0.80735 0.81117 0.84434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.31 13.29 21.45 0.28 -57.03 15 2 C 0.01 0.36 5.46 84.66 0.46 0.82 15 3 Si 0.96 45.62 29.54 68.60 2.03 47.64 15 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 15 5 H -0.28 -13.23 7.11 99.48 0.71 -12.52 15 6 H -0.27 -12.58 7.11 99.48 0.71 -11.87 15 7 C -0.50 -28.77 7.16 25.60 0.18 -28.59 15 8 H 0.05 2.93 7.74 -2.91 -0.02 2.90 15 9 C 0.04 2.22 4.46 29.10 0.13 2.35 15 10 C -0.02 -0.90 5.04 -19.87 -0.10 -1.00 15 11 C -0.13 -4.61 9.68 22.27 0.22 -4.39 15 12 C -0.07 -1.76 10.05 22.27 0.22 -1.53 15 13 C -0.13 -3.03 9.83 22.29 0.22 -2.81 15 14 C -0.01 -0.24 6.31 22.33 0.14 -0.10 15 15 Cl -0.06 -1.38 27.01 -2.72 -0.07 -1.45 15 16 C -0.19 -7.32 5.37 -19.84 -0.11 -7.42 15 17 C 0.31 12.30 4.86 71.23 0.35 12.64 15 18 F -0.20 -9.52 14.90 44.97 0.67 -8.85 15 19 F -0.21 -9.51 15.35 44.97 0.69 -8.82 15 20 H 0.26 15.25 8.31 -92.70 -0.77 14.48 15 21 H 0.02 1.04 5.76 -2.38 -0.01 1.03 15 22 H 0.01 0.57 8.05 -2.39 -0.02 0.55 15 23 H 0.13 4.39 8.06 -2.91 -0.02 4.36 15 24 H 0.18 2.72 8.06 -2.91 -0.02 2.69 15 25 H 0.17 2.75 8.06 -2.91 -0.02 2.73 15 26 H 0.14 4.42 6.17 -2.39 -0.01 4.41 15 Total: -1.00 -67.70 249.84 6.52 -61.18 By element: Atomic # 1 Polarization: -3.88 SS G_CDS: 1.21 Total: -2.67 kcal Atomic # 6 Polarization: -31.73 SS G_CDS: 1.71 Total: -30.02 kcal Atomic # 7 Polarization: -57.31 SS G_CDS: 0.28 Total: -57.03 kcal Atomic # 9 Polarization: -19.02 SS G_CDS: 1.36 Total: -17.66 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.64 kcal Atomic # 17 Polarization: -1.38 SS G_CDS: -0.07 Total: -1.45 kcal Total: -67.70 6.52 -61.18 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260843825.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.235 kcal (2) G-P(sol) polarization free energy of solvation -67.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds