Wall clock time and date at job start Mon Mar 30 2020 05:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00116 * 2 1 4 4 H 1.48501 * 109.47030 * 270.00427 * 3 2 1 5 5 H 1.48501 * 109.47073 * 30.00453 * 3 2 1 6 6 H 1.48498 * 109.47121 * 150.00498 * 3 2 1 7 7 C 1.37881 * 119.99799 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99802 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00095 * 359.97438 * 7 2 1 10 10 C 1.50708 * 109.46967 * 179.97438 * 9 7 2 11 11 C 1.38238 * 120.00493 * 100.00140 * 10 9 7 12 12 C 1.38215 * 120.01126 * 180.27922 * 11 10 9 13 13 C 1.38269 * 120.02528 * 359.48345 * 12 11 10 14 14 C 1.50702 * 119.99066 * 180.25750 * 13 12 11 15 15 F 1.39903 * 109.47004 * 120.25576 * 14 13 12 16 16 F 1.39902 * 109.46800 * 240.25553 * 14 13 12 17 17 C 1.38184 * 120.01333 * 0.51246 * 13 12 11 18 18 C 1.38325 * 120.00612 * 280.01776 * 10 9 7 19 19 Cl 1.73598 * 120.01483 * 0.02562 * 18 10 9 20 20 H 0.97002 * 120.00030 * 359.97438 * 1 2 3 21 21 H 1.09005 * 109.47401 * 60.00097 * 9 7 2 22 22 H 1.08997 * 109.47320 * 299.99867 * 9 7 2 23 23 H 1.08002 * 119.99176 * 359.97438 * 11 10 9 24 24 H 1.07997 * 119.99002 * 179.72217 * 12 11 10 25 25 H 1.09003 * 109.47404 * 0.25489 * 14 13 12 26 26 H 1.08003 * 120.00655 * 179.76319 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2303 -3.6446 -0.0018 11 6 2.5225 -4.3057 1.1766 12 6 3.4250 -5.3525 1.1766 13 6 4.0281 -5.7461 -0.0038 14 6 5.0076 -6.8913 -0.0038 15 9 4.5427 -7.9025 -0.8516 16 9 6.2526 -6.4400 -0.4552 17 6 3.7368 -5.0861 -1.1823 18 6 2.8373 -4.0345 -1.1820 19 17 2.4718 -3.2041 -2.6621 20 1 -0.4850 0.8401 0.0004 21 1 0.6240 -2.5567 -0.8903 22 1 0.6247 -2.5571 0.8897 23 1 2.0491 -4.0009 2.0982 24 1 3.6563 -5.8658 2.0982 25 1 5.1084 -7.2834 1.0082 26 1 4.2108 -5.3911 -2.1036 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260868886.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:38 Heat of formation + Delta-G solvation = -100.176435 kcal Electronic energy + Delta-G solvation = -15081.855618 eV Core-core repulsion = 12014.352468 eV Total energy + Delta-G solvation = -3067.503150 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.032 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -48.92083 -46.91044 -39.05469 -35.78805 -33.79898 -31.89013 -30.46351 -28.34272 -25.29168 -22.85242 -22.45391 -20.52708 -17.43098 -17.26564 -17.14422 -16.38794 -15.21256 -14.94883 -14.57051 -14.20884 -13.87270 -13.39444 -13.29727 -13.13078 -12.66727 -12.17432 -11.68390 -11.56832 -11.06123 -11.03531 -10.99788 -10.68523 -10.56441 -10.20737 -9.67377 -9.53564 -8.51242 -8.44944 -8.11051 -6.08622 -4.11697 1.44916 1.56205 2.78259 3.29012 3.35343 3.38828 3.80888 3.90903 4.21685 4.42363 4.66619 5.11183 5.15361 5.22171 5.30146 5.62141 5.76661 6.02435 6.13947 6.45382 6.67631 6.72226 7.12773 7.43941 7.58500 7.85806 8.21047 8.90840 9.51746 11.01812 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.033756 B = 0.006296 C = 0.006086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.281428 B = 4445.972381 C = 4599.540703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.894 3.106 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.505 4.505 8 H 0.057 0.943 9 C 0.043 3.957 10 C -0.005 4.005 11 C -0.120 4.120 12 C -0.085 4.085 13 C -0.195 4.195 14 C 0.319 3.681 15 F -0.204 7.204 16 F -0.203 7.203 17 C -0.075 4.075 18 C -0.040 4.040 19 Cl -0.056 7.056 20 H 0.262 0.738 21 H 0.043 0.957 22 H 0.033 0.967 23 H 0.135 0.865 24 H 0.126 0.874 25 H 0.116 0.884 26 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.872 -11.750 1.101 13.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.721 3.279 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.543 4.543 8 H 0.075 0.925 9 C 0.006 3.994 10 C -0.005 4.005 11 C -0.138 4.138 12 C -0.103 4.103 13 C -0.196 4.196 14 C 0.266 3.734 15 F -0.185 7.185 16 F -0.184 7.184 17 C -0.094 4.094 18 C -0.067 4.067 19 Cl -0.027 7.027 20 H 0.072 0.928 21 H 0.061 0.939 22 H 0.051 0.949 23 H 0.152 0.848 24 H 0.144 0.856 25 H 0.133 0.867 26 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 6.706 -11.569 0.933 13.405 hybrid contribution 0.511 1.002 -0.266 1.156 sum 7.217 -10.567 0.666 12.814 Atomic orbital electron populations 1.69944 1.05988 1.26875 1.50309 1.24933 0.94836 0.99109 0.95056 0.86555 0.79840 0.83195 0.78273 1.20534 1.21167 1.19787 1.20865 0.92848 0.89315 1.51293 0.92514 1.18512 0.92455 0.89094 0.99305 1.20859 0.94728 0.94662 0.90293 1.21074 0.98737 0.95661 0.98311 1.20892 0.96060 0.97050 0.96292 1.19960 1.03561 1.00778 0.95263 1.20324 0.77870 0.83444 0.91800 1.92997 1.88888 1.61901 1.74720 1.93003 1.44141 1.89913 1.91372 1.20700 0.96478 0.94351 0.97834 1.20746 1.00571 0.96365 0.89000 1.98354 1.93673 1.77933 1.32767 0.92793 0.93861 0.94903 0.84754 0.85613 0.86696 0.85454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.66 13.29 55.43 0.74 -24.92 15 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 15 3 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 15 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 15 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 15 7 C -0.51 -13.57 8.86 -34.44 -0.31 -13.87 15 8 H 0.06 1.54 7.74 -52.48 -0.41 1.13 15 9 C 0.04 1.05 4.57 -29.03 -0.13 0.92 15 10 C 0.00 -0.10 5.08 -104.59 -0.53 -0.63 15 11 C -0.12 -2.05 9.67 -39.59 -0.38 -2.44 15 12 C -0.08 -1.20 9.67 -39.58 -0.38 -1.58 15 13 C -0.19 -2.88 5.37 -104.63 -0.56 -3.44 15 14 C 0.32 3.88 5.45 36.01 0.20 4.07 15 15 F -0.20 -2.74 17.26 2.25 0.04 -2.70 15 16 F -0.20 -2.80 17.26 2.25 0.04 -2.76 15 17 C -0.07 -1.26 9.38 -39.55 -0.37 -1.63 15 18 C -0.04 -0.78 6.30 -39.50 -0.25 -1.03 15 19 Cl -0.06 -1.12 27.32 -51.86 -1.42 -2.54 15 20 H 0.26 7.16 8.31 -40.82 -0.34 6.82 15 21 H 0.04 1.13 7.36 -51.93 -0.38 0.75 15 22 H 0.03 0.83 8.01 -51.93 -0.42 0.41 15 23 H 0.13 2.12 8.04 -52.49 -0.42 1.70 15 24 H 0.13 1.28 7.95 -52.49 -0.42 0.86 15 25 H 0.12 0.94 7.88 -51.93 -0.41 0.54 15 26 H 0.13 1.98 8.06 -52.48 -0.42 1.56 15 LS Contribution 259.13 15.07 3.90 3.90 Total: -1.00 -28.99 259.13 -6.55 -35.54 By element: Atomic # 1 Polarization: -2.77 SS G_CDS: -2.01 Total: -4.78 kcal Atomic # 6 Polarization: -15.18 SS G_CDS: -2.82 Total: -18.00 kcal Atomic # 7 Polarization: -25.66 SS G_CDS: 0.74 Total: -24.92 kcal Atomic # 9 Polarization: -5.54 SS G_CDS: 0.08 Total: -5.46 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -1.42 Total: -2.54 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -28.99 -6.55 -35.54 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260868886.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.638 kcal (2) G-P(sol) polarization free energy of solvation -28.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds