Wall clock time and date at job start Mon Mar 30 2020 05:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00116 * 2 1 4 4 H 1.48501 * 109.47030 * 270.00427 * 3 2 1 5 5 H 1.48501 * 109.47073 * 30.00453 * 3 2 1 6 6 H 1.48498 * 109.47121 * 150.00498 * 3 2 1 7 7 C 1.37881 * 119.99799 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99802 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00095 * 359.97438 * 7 2 1 10 10 C 1.50708 * 109.46967 * 179.97438 * 9 7 2 11 11 C 1.38238 * 120.00493 * 100.00140 * 10 9 7 12 12 C 1.38215 * 120.01126 * 180.27922 * 11 10 9 13 13 C 1.38269 * 120.02528 * 359.48345 * 12 11 10 14 14 C 1.50702 * 119.99066 * 180.25750 * 13 12 11 15 15 F 1.39903 * 109.47004 * 120.25576 * 14 13 12 16 16 F 1.39902 * 109.46800 * 240.25553 * 14 13 12 17 17 C 1.38184 * 120.01333 * 0.51246 * 13 12 11 18 18 C 1.38325 * 120.00612 * 280.01776 * 10 9 7 19 19 Cl 1.73598 * 120.01483 * 0.02562 * 18 10 9 20 20 H 0.97002 * 120.00030 * 359.97438 * 1 2 3 21 21 H 1.09005 * 109.47401 * 60.00097 * 9 7 2 22 22 H 1.08997 * 109.47320 * 299.99867 * 9 7 2 23 23 H 1.08002 * 119.99176 * 359.97438 * 11 10 9 24 24 H 1.07997 * 119.99002 * 179.72217 * 12 11 10 25 25 H 1.09003 * 109.47404 * 0.25489 * 14 13 12 26 26 H 1.08003 * 120.00655 * 179.76319 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2303 -3.6446 -0.0018 11 6 2.5225 -4.3057 1.1766 12 6 3.4250 -5.3525 1.1766 13 6 4.0281 -5.7461 -0.0038 14 6 5.0076 -6.8913 -0.0038 15 9 4.5427 -7.9025 -0.8516 16 9 6.2526 -6.4400 -0.4552 17 6 3.7368 -5.0861 -1.1823 18 6 2.8373 -4.0345 -1.1820 19 17 2.4718 -3.2041 -2.6621 20 1 -0.4850 0.8401 0.0004 21 1 0.6240 -2.5567 -0.8903 22 1 0.6247 -2.5571 0.8897 23 1 2.0491 -4.0009 2.0982 24 1 3.6563 -5.8658 2.0982 25 1 5.1084 -7.2834 1.0082 26 1 4.2108 -5.3911 -2.1036 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260868886.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:37 Heat of formation + Delta-G solvation = -115.345901 kcal Electronic energy + Delta-G solvation = -15082.513416 eV Core-core repulsion = 12014.352468 eV Total energy + Delta-G solvation = -3068.160947 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.032 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.90417 -47.90471 -40.40760 -37.27069 -35.62594 -33.60002 -31.77460 -29.96715 -26.81483 -24.49938 -23.76983 -21.94509 -18.60195 -18.48679 -18.25060 -18.12238 -16.85222 -16.30719 -16.05682 -15.70159 -14.93766 -14.70903 -14.65734 -14.29337 -14.12579 -13.74638 -13.42134 -13.19653 -12.70594 -12.55518 -12.40705 -12.20826 -12.12589 -11.92122 -11.56675 -11.28064 -10.57406 -9.86518 -9.58463 -8.18526 -6.28054 0.11976 0.23592 1.32845 1.39608 1.40935 1.50903 2.38610 2.60602 2.81718 3.14935 3.30329 3.69586 3.88768 4.14595 4.16871 4.20332 4.46593 4.67455 4.83459 5.11901 5.20574 5.31591 5.37149 5.74839 5.77361 5.80505 6.16813 6.81300 7.38850 8.91838 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.033756 B = 0.006296 C = 0.006086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.281428 B = 4445.972381 C = 4599.540703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.011 3.989 3 Si 0.954 3.046 4 H -0.278 1.278 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.510 4.510 8 H 0.050 0.950 9 C 0.053 3.947 10 C -0.040 4.040 11 C -0.125 4.125 12 C -0.062 4.062 13 C -0.188 4.188 14 C 0.320 3.680 15 F -0.212 7.212 16 F -0.213 7.213 17 C -0.082 4.082 18 C -0.057 4.057 19 Cl -0.076 7.076 20 H 0.264 0.736 21 H 0.015 0.985 22 H 0.014 0.986 23 H 0.144 0.856 24 H 0.181 0.819 25 H 0.172 0.828 26 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.788 -13.171 2.559 16.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.187 4.187 3 Si 0.779 3.221 4 H -0.204 1.204 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.548 4.548 8 H 0.069 0.931 9 C 0.016 3.984 10 C -0.041 4.041 11 C -0.143 4.143 12 C -0.080 4.080 13 C -0.189 4.189 14 C 0.267 3.733 15 F -0.193 7.193 16 F -0.194 7.194 17 C -0.101 4.101 18 C -0.084 4.084 19 Cl -0.047 7.047 20 H 0.073 0.927 21 H 0.033 0.967 22 H 0.032 0.968 23 H 0.162 0.838 24 H 0.198 0.802 25 H 0.189 0.811 26 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 8.633 -13.001 2.389 15.788 hybrid contribution -0.054 1.330 -0.700 1.504 sum 8.579 -11.671 1.689 14.584 Atomic orbital electron populations 1.70055 1.07417 1.27702 1.51581 1.25729 0.95593 1.02483 0.94881 0.85610 0.78892 0.79318 0.78273 1.20385 1.20510 1.18930 1.21117 0.92628 0.90698 1.50371 0.93149 1.18189 0.92804 0.90420 0.96943 1.20604 0.95851 0.95186 0.92429 1.21269 0.99451 0.96284 0.97291 1.21359 0.93375 0.95168 0.98106 1.20453 1.03121 1.00770 0.94533 1.20764 0.76351 0.82144 0.93999 1.92989 1.88971 1.61965 1.75366 1.92990 1.44645 1.90079 1.91714 1.20895 0.95930 0.93796 0.99466 1.20858 1.01919 0.97559 0.88059 1.98336 1.93947 1.78561 1.33817 0.92714 0.96702 0.96756 0.83795 0.80179 0.81146 0.84662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.71 13.29 21.45 0.28 -54.43 15 2 C 0.01 0.64 5.46 84.66 0.46 1.10 15 3 Si 0.95 43.98 29.54 68.60 2.03 46.01 15 4 H -0.28 -12.68 7.11 99.48 0.71 -11.97 15 5 H -0.28 -12.53 7.11 99.48 0.71 -11.82 15 6 H -0.26 -11.76 7.11 99.48 0.71 -11.05 15 7 C -0.51 -28.04 8.86 25.60 0.23 -27.82 15 8 H 0.05 2.77 7.74 -2.91 -0.02 2.75 15 9 C 0.05 2.71 4.57 29.10 0.13 2.85 15 10 C -0.04 -1.65 5.08 -19.84 -0.10 -1.75 15 11 C -0.12 -4.05 9.67 22.26 0.22 -3.84 15 12 C -0.06 -1.49 9.67 22.27 0.22 -1.27 15 13 C -0.19 -4.85 5.37 -19.87 -0.11 -4.96 15 14 C 0.32 6.26 5.45 71.24 0.39 6.65 15 15 F -0.21 -4.90 17.26 44.97 0.78 -4.12 15 16 F -0.21 -5.09 17.26 44.97 0.78 -4.31 15 17 C -0.08 -2.65 9.38 22.29 0.21 -2.44 15 18 C -0.06 -2.24 6.30 22.32 0.14 -2.10 15 19 Cl -0.08 -3.10 27.32 -2.72 -0.07 -3.17 15 20 H 0.26 14.72 8.31 -92.71 -0.77 13.95 15 21 H 0.01 0.82 7.36 -2.38 -0.02 0.80 15 22 H 0.01 0.75 8.01 -2.39 -0.02 0.73 15 23 H 0.14 4.30 8.04 -2.91 -0.02 4.28 15 24 H 0.18 2.37 7.95 -2.91 -0.02 2.34 15 25 H 0.17 1.58 7.88 -2.39 -0.02 1.57 15 26 H 0.14 4.05 8.06 -2.91 -0.02 4.03 15 Total: -1.00 -64.78 259.13 6.77 -58.00 By element: Atomic # 1 Polarization: -5.59 SS G_CDS: 1.20 Total: -4.39 kcal Atomic # 6 Polarization: -35.36 SS G_CDS: 1.78 Total: -33.58 kcal Atomic # 7 Polarization: -54.71 SS G_CDS: 0.28 Total: -54.43 kcal Atomic # 9 Polarization: -9.99 SS G_CDS: 1.55 Total: -8.44 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 17 Polarization: -3.10 SS G_CDS: -0.07 Total: -3.17 kcal Total: -64.78 6.77 -58.00 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260868886.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.344 kcal (2) G-P(sol) polarization free energy of solvation -64.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds