Wall clock time and date at job start Mon Mar 30 2020 05:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47017 * 2 1 4 4 C 1.50694 * 109.47155 * 120.00254 * 2 1 3 5 5 H 1.08006 * 119.99910 * 114.36345 * 4 2 1 6 6 C 1.37881 * 120.00170 * 294.36719 * 4 2 1 7 7 N 1.31518 * 120.00206 * 157.02460 * 6 4 2 8 8 Si 1.86800 * 119.99862 * 336.75162 * 6 4 2 9 9 H 1.48493 * 109.47240 * 180.27911 * 8 6 4 10 10 H 1.48501 * 109.46836 * 300.27621 * 8 6 4 11 11 H 1.48495 * 109.47090 * 60.27236 * 8 6 4 12 12 C 1.50704 * 109.46931 * 240.00451 * 2 1 3 13 13 C 1.38454 * 120.01699 * 299.71786 * 12 2 1 14 14 F 1.35095 * 119.99974 * 0.02562 * 13 12 2 15 15 C 1.38439 * 119.99329 * 179.77425 * 13 12 2 16 16 C 1.38232 * 120.03656 * 0.50467 * 15 13 12 17 17 C 1.38274 * 120.03914 * 359.75355 * 16 15 13 18 18 Cl 1.73604 * 120.00215 * 180.02562 * 17 16 15 19 19 C 1.38369 * 120.01805 * 120.00192 * 12 2 1 20 20 F 1.35101 * 120.01675 * 359.95234 * 19 12 2 21 21 H 1.09001 * 109.47238 * 53.35322 * 1 2 3 22 22 H 1.09003 * 109.47214 * 173.34995 * 1 2 3 23 23 H 1.09000 * 109.47128 * 293.34882 * 1 2 3 24 24 H 0.96996 * 119.99732 * 354.64731 * 7 6 4 25 25 H 1.08004 * 119.98038 * 180.25746 * 15 13 12 26 26 H 1.08001 * 119.98227 * 179.72280 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5761 -1.6386 1.1338 6 6 1.7976 -0.1756 2.4794 7 7 1.8106 -0.9526 3.5405 8 14 1.4689 1.6538 2.6653 9 1 1.2556 1.9752 4.0993 10 1 2.6335 2.4204 2.1542 11 1 0.2565 2.0201 1.8902 12 6 2.0323 -0.7103 -1.2306 13 6 1.7028 -2.0375 -1.4472 14 9 0.9304 -2.6960 -0.5555 15 6 2.1606 -2.6883 -2.5801 16 6 2.9553 -2.0167 -3.4902 17 6 3.2896 -0.6927 -3.2726 18 17 4.2871 0.1500 -4.4166 19 6 2.8278 -0.0382 -2.1416 20 9 3.1539 1.2555 -1.9288 21 1 -0.3634 0.6134 -0.8245 22 1 -0.3634 -1.0208 -0.1190 23 1 -0.3633 0.4073 0.9435 24 1 1.9077 -1.9122 3.4377 25 1 1.9000 -3.7224 -2.7509 26 1 3.3157 -2.5265 -4.3715 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260905401.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:04 Heat of formation + Delta-G solvation = -81.405121 kcal Electronic energy + Delta-G solvation = -15799.524817 eV Core-core repulsion = 12732.835652 eV Total energy + Delta-G solvation = -3066.689165 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.032 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.62493 -48.40524 -38.74017 -36.48140 -34.65286 -31.86154 -29.88276 -28.99151 -24.86615 -23.21501 -22.55664 -19.99494 -17.82709 -17.73597 -16.79299 -16.01050 -15.63335 -15.28603 -14.81767 -14.14212 -14.02848 -13.43082 -12.98299 -12.77132 -12.67050 -12.19677 -12.07234 -11.75694 -11.43740 -11.13318 -10.86276 -10.58594 -10.48527 -9.85594 -9.82308 -9.12632 -8.50420 -8.30906 -8.19722 -6.51754 -4.12376 1.07242 1.26443 2.09533 3.38393 3.44373 3.53744 3.60412 4.19131 4.47292 4.62215 4.80760 5.03732 5.18573 5.31214 5.75905 5.92090 6.03803 6.20659 6.21531 6.37350 6.55455 6.63283 6.96148 7.05734 7.32945 7.93280 8.32540 8.81563 9.52100 10.85176 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.028366 B = 0.008861 C = 0.007392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.857309 B = 3159.022139 C = 3787.006141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.049 3.951 3 H 0.041 0.959 4 C -0.600 4.600 5 H 0.059 0.941 6 C 0.043 3.957 7 N -0.893 5.893 8 Si 1.032 2.968 9 H -0.283 1.283 10 H -0.281 1.281 11 H -0.276 1.276 12 C -0.088 4.088 13 C 0.144 3.856 14 F -0.112 7.112 15 C -0.161 4.161 16 C -0.079 4.079 17 C -0.088 4.088 18 Cl -0.061 7.061 19 C 0.125 3.875 20 F -0.120 7.120 21 H 0.024 0.976 22 H 0.053 0.947 23 H 0.059 0.941 24 H 0.271 0.729 25 H 0.144 0.856 26 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.812 -0.753 -14.200 14.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.030 3.970 3 H 0.059 0.941 4 C -0.637 4.637 5 H 0.078 0.922 6 C -0.163 4.163 7 N -0.525 5.525 8 Si 0.860 3.140 9 H -0.209 1.209 10 H -0.207 1.207 11 H -0.202 1.202 12 C -0.090 4.090 13 C 0.124 3.876 14 F -0.090 7.090 15 C -0.180 4.180 16 C -0.098 4.098 17 C -0.115 4.115 18 Cl -0.032 7.032 19 C 0.105 3.895 20 F -0.098 7.098 21 H 0.043 0.957 22 H 0.072 0.928 23 H 0.078 0.922 24 H 0.081 0.919 25 H 0.162 0.838 26 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 0.630 0.527 -13.106 13.132 hybrid contribution 0.400 -1.092 -1.053 1.569 sum 1.029 -0.565 -14.160 14.208 Atomic orbital electron populations 1.22230 0.97337 1.00800 1.00077 1.18161 0.92977 0.96076 0.89785 0.94149 1.21741 1.41350 1.10532 0.90080 0.92247 1.25664 0.93136 1.05698 0.91849 1.70841 1.43404 1.06503 1.31739 0.84204 0.77475 0.76090 0.76278 1.20905 1.20698 1.20164 1.20505 0.97204 0.93785 0.97522 1.17244 0.92916 0.89657 0.87763 1.91550 1.71429 1.79720 1.66330 1.21087 1.01356 1.01374 0.94223 1.20521 0.97916 0.91379 0.99935 1.20884 1.02585 0.94604 0.93472 1.98351 1.68043 1.77861 1.58970 1.16964 0.98877 0.79837 0.93816 1.91514 1.90604 1.33170 1.94553 0.95687 0.92846 0.92208 0.91925 0.83847 0.83776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 8.80 37.16 0.33 -2.91 15 2 C 0.05 1.17 1.96 -92.93 -0.18 0.99 15 3 H 0.04 0.98 5.70 -51.93 -0.30 0.68 15 4 C -0.60 -16.56 7.86 -34.44 -0.27 -16.83 15 5 H 0.06 1.77 7.63 -52.48 -0.40 1.37 15 6 C 0.04 1.23 5.19 -17.82 -0.09 1.14 15 7 N -0.89 -26.92 13.70 55.43 0.76 -26.16 15 8 Si 1.03 24.89 26.45 -169.99 -4.50 20.40 15 9 H -0.28 -6.85 7.11 56.52 0.40 -6.45 15 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 11 H -0.28 -6.16 6.15 56.52 0.35 -5.81 15 12 C -0.09 -1.83 4.76 -104.49 -0.50 -2.33 15 13 C 0.14 2.73 6.60 -39.43 -0.26 2.47 15 14 F -0.11 -2.34 14.27 2.25 0.03 -2.31 15 15 C -0.16 -2.35 10.02 -39.51 -0.40 -2.75 15 16 C -0.08 -1.06 9.82 -39.57 -0.39 -1.45 15 17 C -0.09 -1.38 6.33 -39.43 -0.25 -1.63 15 18 Cl -0.06 -0.85 28.62 -51.86 -1.48 -2.33 15 19 C 0.13 2.38 7.22 -39.40 -0.28 2.09 15 20 F -0.12 -2.37 15.76 2.25 0.04 -2.33 15 21 H 0.02 0.47 8.14 -51.93 -0.42 0.05 15 22 H 0.05 1.15 6.17 -51.93 -0.32 0.83 15 23 H 0.06 1.36 5.48 -51.93 -0.28 1.08 15 24 H 0.27 8.15 8.73 -40.82 -0.36 7.79 15 25 H 0.14 1.64 8.06 -52.48 -0.42 1.22 15 26 H 0.14 1.43 8.06 -52.49 -0.42 1.01 15 LS Contribution 245.69 15.07 3.70 3.70 Total: -1.00 -29.10 245.69 -5.52 -34.62 By element: Atomic # 1 Polarization: -2.60 SS G_CDS: -1.78 Total: -4.38 kcal Atomic # 6 Polarization: -18.91 SS G_CDS: -2.29 Total: -21.21 kcal Atomic # 7 Polarization: -26.92 SS G_CDS: 0.76 Total: -26.16 kcal Atomic # 9 Polarization: -4.71 SS G_CDS: 0.07 Total: -4.64 kcal Atomic # 14 Polarization: 24.89 SS G_CDS: -4.50 Total: 20.40 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -1.48 Total: -2.33 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -29.10 -5.52 -34.62 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260905401.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.789 kcal (2) G-P(sol) polarization free energy of solvation -29.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds