Wall clock time and date at job start Mon Mar 30 2020 05:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47017 * 2 1 4 4 C 1.50694 * 109.47155 * 120.00254 * 2 1 3 5 5 H 1.08006 * 119.99910 * 114.36345 * 4 2 1 6 6 C 1.37881 * 120.00170 * 294.36719 * 4 2 1 7 7 N 1.31518 * 120.00206 * 157.02460 * 6 4 2 8 8 Si 1.86800 * 119.99862 * 336.75162 * 6 4 2 9 9 H 1.48493 * 109.47240 * 180.27911 * 8 6 4 10 10 H 1.48501 * 109.46836 * 300.27621 * 8 6 4 11 11 H 1.48495 * 109.47090 * 60.27236 * 8 6 4 12 12 C 1.50704 * 109.46931 * 240.00451 * 2 1 3 13 13 C 1.38454 * 120.01699 * 299.71786 * 12 2 1 14 14 F 1.35095 * 119.99974 * 0.02562 * 13 12 2 15 15 C 1.38439 * 119.99329 * 179.77425 * 13 12 2 16 16 C 1.38232 * 120.03656 * 0.50467 * 15 13 12 17 17 C 1.38274 * 120.03914 * 359.75355 * 16 15 13 18 18 Cl 1.73604 * 120.00215 * 180.02562 * 17 16 15 19 19 C 1.38369 * 120.01805 * 120.00192 * 12 2 1 20 20 F 1.35101 * 120.01675 * 359.95234 * 19 12 2 21 21 H 1.09001 * 109.47238 * 53.35322 * 1 2 3 22 22 H 1.09003 * 109.47214 * 173.34995 * 1 2 3 23 23 H 1.09000 * 109.47128 * 293.34882 * 1 2 3 24 24 H 0.96996 * 119.99732 * 354.64731 * 7 6 4 25 25 H 1.08004 * 119.98038 * 180.25746 * 15 13 12 26 26 H 1.08001 * 119.98227 * 179.72280 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5761 -1.6386 1.1338 6 6 1.7976 -0.1756 2.4794 7 7 1.8106 -0.9526 3.5405 8 14 1.4689 1.6538 2.6653 9 1 1.2556 1.9752 4.0993 10 1 2.6335 2.4204 2.1542 11 1 0.2565 2.0201 1.8902 12 6 2.0323 -0.7103 -1.2306 13 6 1.7028 -2.0375 -1.4472 14 9 0.9304 -2.6960 -0.5555 15 6 2.1606 -2.6883 -2.5801 16 6 2.9553 -2.0167 -3.4902 17 6 3.2896 -0.6927 -3.2726 18 17 4.2871 0.1500 -4.4166 19 6 2.8278 -0.0382 -2.1416 20 9 3.1539 1.2555 -1.9288 21 1 -0.3634 0.6134 -0.8245 22 1 -0.3634 -1.0208 -0.1190 23 1 -0.3633 0.4073 0.9435 24 1 1.9077 -1.9122 3.4377 25 1 1.9000 -3.7224 -2.7509 26 1 3.3157 -2.5265 -4.3715 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260905401.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:04 Heat of formation + Delta-G solvation = -98.220034 kcal Electronic energy + Delta-G solvation = -15800.253967 eV Core-core repulsion = 12732.835652 eV Total energy + Delta-G solvation = -3067.418314 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.032 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -50.07725 -49.91617 -40.07811 -37.71334 -36.41498 -33.83976 -31.20002 -30.50627 -26.86363 -24.75562 -23.90041 -21.72400 -19.78121 -19.14905 -18.35553 -17.35550 -17.10023 -16.68856 -16.32820 -15.93881 -15.42844 -15.24608 -14.67255 -14.22984 -13.96365 -13.92467 -13.63668 -13.36319 -13.10861 -12.54071 -12.39649 -12.18483 -12.03423 -11.71433 -11.58443 -11.15495 -10.44485 -9.89045 -9.62261 -8.75097 -6.36268 -0.24914 -0.04667 0.88298 1.44633 1.50322 1.70050 2.22165 2.46369 2.85579 2.98653 3.29564 3.52669 3.82046 3.98108 4.30605 4.60284 4.65460 4.74648 4.84460 4.88869 4.90330 4.93761 5.22476 5.47945 5.64935 5.90456 6.03672 6.53273 7.35204 8.59091 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.028366 B = 0.008861 C = 0.007392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.857309 B = 3159.022139 C = 3787.006141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.046 3.954 3 H 0.036 0.964 4 C -0.595 4.595 5 H 0.022 0.978 6 C -0.006 4.006 7 N -0.926 5.926 8 Si 1.069 2.931 9 H -0.285 1.285 10 H -0.269 1.269 11 H -0.246 1.246 12 C -0.123 4.123 13 C 0.116 3.884 14 F -0.133 7.133 15 C -0.139 4.139 16 C -0.054 4.054 17 C -0.085 4.085 18 Cl -0.040 7.040 19 C 0.107 3.893 20 F -0.131 7.131 21 H 0.053 0.947 22 H 0.049 0.951 23 H 0.047 0.953 24 H 0.255 0.745 25 H 0.182 0.818 26 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.981 -0.579 -17.083 17.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.027 3.973 3 H 0.054 0.946 4 C -0.632 4.632 5 H 0.040 0.960 6 C -0.206 4.206 7 N -0.561 5.561 8 Si 0.890 3.110 9 H -0.211 1.211 10 H -0.194 1.194 11 H -0.171 1.171 12 C -0.125 4.125 13 C 0.097 3.903 14 F -0.112 7.112 15 C -0.158 4.158 16 C -0.072 4.072 17 C -0.112 4.112 18 Cl -0.011 7.011 19 C 0.087 3.913 20 F -0.110 7.110 21 H 0.072 0.928 22 H 0.068 0.932 23 H 0.066 0.934 24 H 0.064 0.936 25 H 0.200 0.800 26 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 0.799 0.698 -16.020 16.055 hybrid contribution 0.442 -1.242 -0.315 1.355 sum 1.241 -0.544 -16.335 16.391 Atomic orbital electron populations 1.22109 0.96116 1.01150 1.00531 1.18015 0.93980 0.95561 0.89785 0.94627 1.21859 1.40048 1.09143 0.92176 0.95968 1.26971 0.92754 1.09103 0.91804 1.70959 1.46612 1.05755 1.32761 0.83737 0.79038 0.71558 0.76629 1.21051 1.19450 1.17060 1.20307 0.99673 0.94949 0.97567 1.17658 0.94004 0.89511 0.89145 1.91493 1.72242 1.79974 1.67463 1.21495 0.99503 1.02798 0.92010 1.21093 0.95537 0.90143 1.00466 1.21053 1.02061 0.95405 0.92713 1.98366 1.67282 1.77727 1.57750 1.17120 0.99557 0.79666 0.94970 1.91475 1.90789 1.33921 1.94789 0.92813 0.93203 0.93411 0.93568 0.80041 0.78982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.18 8.80 71.98 0.63 -5.55 15 2 C 0.05 2.19 1.96 -12.29 -0.02 2.16 15 3 H 0.04 1.72 5.70 -2.39 -0.01 1.71 15 4 C -0.59 -33.93 7.86 25.60 0.20 -33.72 15 5 H 0.02 1.39 7.63 -2.91 -0.02 1.37 15 6 C -0.01 -0.37 5.19 84.65 0.44 0.07 15 7 N -0.93 -58.04 13.70 21.45 0.29 -57.75 15 8 Si 1.07 50.47 26.45 68.60 1.81 52.29 15 9 H -0.28 -13.43 7.11 99.48 0.71 -12.72 15 10 H -0.27 -12.10 7.11 99.48 0.71 -11.39 15 11 H -0.25 -10.40 6.15 99.48 0.61 -9.79 15 12 C -0.12 -5.08 4.76 -19.78 -0.09 -5.17 15 13 C 0.12 4.31 6.60 22.37 0.15 4.46 15 14 F -0.13 -5.64 14.27 44.97 0.64 -5.00 15 15 C -0.14 -3.56 10.02 22.32 0.22 -3.34 15 16 C -0.05 -1.20 9.82 22.28 0.22 -0.98 15 17 C -0.08 -2.40 6.33 22.36 0.14 -2.25 15 18 Cl -0.04 -0.98 28.62 -2.72 -0.08 -1.06 15 19 C 0.11 3.92 7.22 22.39 0.16 4.08 15 20 F -0.13 -5.07 15.76 44.97 0.71 -4.36 15 21 H 0.05 1.99 8.14 -2.39 -0.02 1.98 15 22 H 0.05 2.17 6.17 -2.39 -0.01 2.15 15 23 H 0.05 2.15 5.48 -2.39 -0.01 2.13 15 24 H 0.26 16.24 8.73 -92.71 -0.81 15.43 15 25 H 0.18 3.25 8.06 -2.91 -0.02 3.22 15 26 H 0.19 2.49 8.06 -2.91 -0.02 2.46 15 Total: -1.00 -66.09 245.69 6.52 -59.58 By element: Atomic # 1 Polarization: -4.53 SS G_CDS: 1.09 Total: -3.44 kcal Atomic # 6 Polarization: -42.30 SS G_CDS: 2.05 Total: -40.25 kcal Atomic # 7 Polarization: -58.04 SS G_CDS: 0.29 Total: -57.75 kcal Atomic # 9 Polarization: -10.71 SS G_CDS: 1.35 Total: -9.36 kcal Atomic # 14 Polarization: 50.47 SS G_CDS: 1.81 Total: 52.29 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -0.08 Total: -1.06 kcal Total: -66.09 6.52 -59.58 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260905401.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.645 kcal (2) G-P(sol) polarization free energy of solvation -66.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds