Wall clock time and date at job start Mon Mar 30 2020 05:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.46752 * 2 1 4 4 C 1.50697 * 109.47376 * 239.99608 * 2 1 3 5 5 H 1.08002 * 120.00359 * 240.00563 * 4 2 1 6 6 C 1.37881 * 119.99919 * 59.99738 * 4 2 1 7 7 N 1.31511 * 119.99822 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00006 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.47182 * 60.00742 * 8 6 4 10 10 H 1.48507 * 109.47106 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47383 * 300.00514 * 8 6 4 12 12 C 1.50709 * 109.46738 * 119.99642 * 2 1 3 13 13 C 1.38447 * 120.01616 * 60.25524 * 12 2 1 14 14 F 1.35097 * 120.00787 * 359.97438 * 13 12 2 15 15 C 1.38444 * 119.99373 * 180.31811 * 13 12 2 16 16 C 1.38236 * 120.03333 * 359.67613 * 15 13 12 17 17 C 1.38275 * 120.03725 * 0.02728 * 16 15 13 18 18 Cl 1.73605 * 119.99629 * 179.97438 * 17 16 15 19 19 C 1.38374 * 120.01706 * 240.00034 * 12 2 1 20 20 F 1.35104 * 120.01732 * 0.02562 * 19 12 2 21 21 H 1.09004 * 109.47157 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47323 * 300.00572 * 1 2 3 23 23 H 1.08998 * 109.46895 * 60.00129 * 1 2 3 24 24 H 0.96998 * 120.00285 * 179.97438 * 7 6 4 25 25 H 1.08000 * 119.98345 * 179.70197 * 15 13 12 26 26 H 1.08005 * 119.97720 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8300 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8281 -2.5200 -4.0080 10 1 1.8280 -0.4195 -5.2204 11 1 3.8076 -1.1192 -4.0076 12 6 2.0323 -0.7104 1.2306 13 6 1.7024 -2.0374 1.4474 14 9 0.9296 -2.6958 0.5561 15 6 2.1586 -2.6876 2.5813 16 6 2.9490 -2.0145 3.4941 17 6 3.2844 -0.6909 3.2758 18 17 4.2767 0.1536 4.4230 19 6 2.8278 -0.0382 2.1417 20 9 3.1543 1.2554 1.9288 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 0.7095 1.1616 -3.4844 25 1 1.8971 -3.7214 2.7527 26 1 3.3048 -2.5228 4.3782 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260905402.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:07 Heat of formation + Delta-G solvation = -81.430570 kcal Electronic energy + Delta-G solvation = -15745.556051 eV Core-core repulsion = 12678.865783 eV Total energy + Delta-G solvation = -3066.690268 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.032 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.48458 -48.30284 -38.62343 -36.38799 -34.52618 -31.60619 -29.76637 -28.51879 -25.22017 -23.18756 -22.42541 -20.17758 -17.67085 -17.20004 -16.29693 -15.82181 -15.39815 -15.16369 -14.69864 -14.62807 -13.92592 -13.25181 -12.95246 -12.62808 -12.44324 -12.03910 -11.62674 -11.53171 -11.11207 -10.97950 -10.86863 -10.75799 -10.42032 -10.14797 -9.67129 -9.17791 -8.43154 -8.32897 -8.12503 -6.06848 -4.14463 1.17199 1.37273 2.18181 3.30259 3.34201 3.37151 3.64754 4.29971 4.39468 4.72246 4.92151 5.16311 5.26008 5.44670 5.91605 6.02352 6.17039 6.33772 6.38636 6.77591 6.92160 7.04750 7.16984 7.57701 7.79801 7.97587 8.23880 8.84485 9.50013 10.99247 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.030248 B = 0.007851 C = 0.007182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.473180 B = 3565.778755 C = 3897.455950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.074 3.926 3 H 0.049 0.951 4 C -0.510 4.510 5 H 0.056 0.944 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.896 3.104 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.276 1.276 12 C -0.094 4.094 13 C 0.142 3.858 14 F -0.113 7.113 15 C -0.163 4.163 16 C -0.081 4.081 17 C -0.089 4.089 18 Cl -0.064 7.064 19 C 0.127 3.873 20 F -0.119 7.119 21 H 0.038 0.962 22 H 0.009 0.991 23 H 0.091 0.909 24 H 0.263 0.737 25 H 0.142 0.858 26 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.612 -4.593 11.150 12.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.055 3.945 3 H 0.067 0.933 4 C -0.548 4.548 5 H 0.075 0.925 6 C -0.136 4.136 7 N -0.526 5.526 8 Si 0.724 3.276 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.202 1.202 12 C -0.096 4.096 13 C 0.122 3.878 14 F -0.091 7.091 15 C -0.182 4.182 16 C -0.100 4.100 17 C -0.117 4.117 18 Cl -0.035 7.035 19 C 0.106 3.894 20 F -0.097 7.097 21 H 0.057 0.943 22 H 0.028 0.972 23 H 0.110 0.890 24 H 0.073 0.927 25 H 0.160 0.840 26 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.596 -4.363 11.060 12.170 hybrid contribution 0.392 -0.260 -0.917 1.030 sum 2.988 -4.623 10.143 11.541 Atomic orbital electron populations 1.21857 0.96774 1.00260 1.00716 1.17896 0.93520 0.96081 0.86971 0.93347 1.20899 1.31824 1.12473 0.89565 0.92545 1.24900 0.94846 0.94906 0.98931 1.69863 1.36281 1.22637 1.23776 0.86580 0.79247 0.79825 0.81968 1.20067 1.21154 1.20179 1.20882 0.96588 0.93729 0.98418 1.17269 0.92931 0.89782 0.87788 1.91540 1.71469 1.79740 1.66387 1.21074 1.01548 1.01312 0.94278 1.20493 0.98179 0.91408 0.99916 1.20904 1.02796 0.94608 0.93355 1.98347 1.68434 1.77840 1.58871 1.16991 0.98732 0.79903 0.93735 1.91522 1.90540 1.33148 1.94537 0.94289 0.97198 0.89014 0.92694 0.83986 0.83937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.34 8.76 37.16 0.33 -3.02 15 2 C 0.07 1.85 2.37 -92.92 -0.22 1.63 15 3 H 0.05 1.32 7.13 -51.93 -0.37 0.95 15 4 C -0.51 -13.84 7.58 -34.44 -0.26 -14.10 15 5 H 0.06 1.53 7.59 -52.49 -0.40 1.13 15 6 C 0.07 1.81 5.30 -17.82 -0.09 1.72 15 7 N -0.89 -25.03 11.32 55.43 0.63 -24.40 15 8 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 15 9 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 15 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 12 C -0.09 -2.01 4.75 -104.49 -0.50 -2.51 15 13 C 0.14 2.72 6.69 -39.43 -0.26 2.45 15 14 F -0.11 -2.34 14.39 2.25 0.03 -2.31 15 15 C -0.16 -2.40 10.02 -39.51 -0.40 -2.79 15 16 C -0.08 -1.11 9.82 -39.57 -0.39 -1.50 15 17 C -0.09 -1.44 6.32 -39.44 -0.25 -1.69 15 18 Cl -0.06 -0.91 28.62 -51.86 -1.48 -2.40 15 19 C 0.13 2.48 7.22 -39.40 -0.28 2.19 15 20 F -0.12 -2.46 15.76 2.25 0.04 -2.43 15 21 H 0.04 0.91 6.33 -51.93 -0.33 0.58 15 22 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 15 23 H 0.09 2.42 6.07 -51.93 -0.32 2.10 15 24 H 0.26 7.08 8.31 -40.82 -0.34 6.74 15 25 H 0.14 1.63 8.06 -52.49 -0.42 1.21 15 26 H 0.14 1.46 8.06 -52.48 -0.42 1.04 15 LS Contribution 249.46 15.07 3.76 3.76 Total: -1.00 -27.91 249.46 -6.19 -34.10 By element: Atomic # 1 Polarization: -3.08 SS G_CDS: -1.82 Total: -4.90 kcal Atomic # 6 Polarization: -15.29 SS G_CDS: -2.33 Total: -17.62 kcal Atomic # 7 Polarization: -25.03 SS G_CDS: 0.63 Total: -24.40 kcal Atomic # 9 Polarization: -4.81 SS G_CDS: 0.07 Total: -4.74 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -1.48 Total: -2.40 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -27.91 -6.19 -34.10 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260905402.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.332 kcal (2) G-P(sol) polarization free energy of solvation -27.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds