Wall clock time and date at job start Mon Mar 30 2020 05:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.46752 * 2 1 4 4 C 1.50697 * 109.47376 * 239.99608 * 2 1 3 5 5 H 1.08002 * 120.00359 * 240.00563 * 4 2 1 6 6 C 1.37881 * 119.99919 * 59.99738 * 4 2 1 7 7 N 1.31511 * 119.99822 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00006 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.47182 * 60.00742 * 8 6 4 10 10 H 1.48507 * 109.47106 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47383 * 300.00514 * 8 6 4 12 12 C 1.50709 * 109.46738 * 119.99642 * 2 1 3 13 13 C 1.38447 * 120.01616 * 60.25524 * 12 2 1 14 14 F 1.35097 * 120.00787 * 359.97438 * 13 12 2 15 15 C 1.38444 * 119.99373 * 180.31811 * 13 12 2 16 16 C 1.38236 * 120.03333 * 359.67613 * 15 13 12 17 17 C 1.38275 * 120.03725 * 0.02728 * 16 15 13 18 18 Cl 1.73605 * 119.99629 * 179.97438 * 17 16 15 19 19 C 1.38374 * 120.01706 * 240.00034 * 12 2 1 20 20 F 1.35104 * 120.01732 * 0.02562 * 19 12 2 21 21 H 1.09004 * 109.47157 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47323 * 300.00572 * 1 2 3 23 23 H 1.08998 * 109.46895 * 60.00129 * 1 2 3 24 24 H 0.96998 * 120.00285 * 179.97438 * 7 6 4 25 25 H 1.08000 * 119.98345 * 179.70197 * 15 13 12 26 26 H 1.08005 * 119.97720 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8300 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8281 -2.5200 -4.0080 10 1 1.8280 -0.4195 -5.2204 11 1 3.8076 -1.1192 -4.0076 12 6 2.0323 -0.7104 1.2306 13 6 1.7024 -2.0374 1.4474 14 9 0.9296 -2.6958 0.5561 15 6 2.1586 -2.6876 2.5813 16 6 2.9490 -2.0145 3.4941 17 6 3.2844 -0.6909 3.2758 18 17 4.2767 0.1536 4.4230 19 6 2.8278 -0.0382 2.1417 20 9 3.1543 1.2554 1.9288 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 0.7095 1.1616 -3.4844 25 1 1.8971 -3.7214 2.7527 26 1 3.3048 -2.5228 4.3782 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260905402.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:06 Heat of formation + Delta-G solvation = -96.009874 kcal Electronic energy + Delta-G solvation = -15746.188257 eV Core-core repulsion = 12678.865783 eV Total energy + Delta-G solvation = -3067.322474 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.032 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -50.00778 -49.80330 -39.99108 -37.65428 -36.33522 -33.46807 -31.10715 -30.14584 -27.29760 -24.75521 -23.79371 -21.91561 -19.11047 -18.86010 -17.98168 -17.33624 -16.94660 -16.70604 -16.41061 -16.20930 -15.33455 -14.93951 -14.65641 -13.99719 -13.89169 -13.68377 -13.29748 -13.16695 -12.88393 -12.78607 -12.44484 -12.20498 -12.15704 -11.97980 -11.44746 -11.14110 -10.51347 -9.76638 -9.53297 -8.14695 -6.29317 -0.17643 0.03399 0.93478 1.40425 1.42050 1.49651 2.28534 2.42744 2.93894 3.13827 3.37542 3.63990 3.91659 4.08550 4.48311 4.77193 4.82482 4.85650 4.96975 5.01343 5.07342 5.12282 5.50080 5.66993 5.78677 5.94870 6.20321 6.75211 7.38067 8.90537 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.030248 B = 0.007851 C = 0.007182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.473180 B = 3565.778755 C = 3897.455950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.073 3.927 3 H 0.011 0.989 4 C -0.522 4.522 5 H 0.051 0.949 6 C 0.016 3.984 7 N -0.916 5.916 8 Si 0.957 3.043 9 H -0.269 1.269 10 H -0.281 1.281 11 H -0.272 1.272 12 C -0.128 4.128 13 C 0.120 3.880 14 F -0.130 7.130 15 C -0.137 4.137 16 C -0.056 4.056 17 C -0.085 4.085 18 Cl -0.044 7.044 19 C 0.103 3.897 20 F -0.136 7.136 21 H 0.041 0.959 22 H 0.024 0.976 23 H 0.064 0.936 24 H 0.264 0.736 25 H 0.186 0.814 26 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.526 -6.753 12.914 14.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.055 3.945 3 H 0.029 0.971 4 C -0.560 4.560 5 H 0.069 0.931 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.782 3.218 9 H -0.194 1.194 10 H -0.206 1.206 11 H -0.197 1.197 12 C -0.130 4.130 13 C 0.101 3.899 14 F -0.108 7.108 15 C -0.155 4.155 16 C -0.074 4.074 17 C -0.113 4.113 18 Cl -0.015 7.015 19 C 0.082 3.918 20 F -0.115 7.115 21 H 0.060 0.940 22 H 0.043 0.957 23 H 0.083 0.917 24 H 0.073 0.927 25 H 0.203 0.797 26 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 3.514 -6.524 12.836 14.821 hybrid contribution 0.155 0.416 -1.327 1.399 sum 3.669 -6.109 11.509 13.536 Atomic orbital electron populations 1.21682 0.96695 1.00100 1.00016 1.17637 0.93740 0.94399 0.88748 0.97086 1.21171 1.31627 1.12323 0.90844 0.93074 1.25703 0.95102 0.95635 1.01842 1.69996 1.37285 1.23865 1.24309 0.85627 0.78764 0.78907 0.78527 1.19362 1.20627 1.19726 1.20576 0.99189 0.95148 0.98067 1.17593 0.93851 0.89239 0.89240 1.91492 1.72131 1.79810 1.67356 1.21504 0.99390 1.02847 0.91806 1.21090 0.95781 0.89972 1.00565 1.21063 1.02309 0.95491 0.92439 1.98359 1.67718 1.77804 1.57649 1.17217 0.99818 0.79558 0.95158 1.91469 1.90821 1.34365 1.94841 0.93993 0.95733 0.91712 0.92715 0.79697 0.79003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.38 8.76 71.98 0.63 -5.75 15 2 C 0.07 3.83 2.37 -12.28 -0.03 3.80 15 3 H 0.01 0.64 7.13 -2.39 -0.02 0.62 15 4 C -0.52 -29.17 7.58 25.60 0.19 -28.97 15 5 H 0.05 2.83 7.59 -2.91 -0.02 2.81 15 6 C 0.02 0.91 5.30 84.66 0.45 1.36 15 7 N -0.92 -53.41 11.32 21.45 0.24 -53.17 15 8 Si 0.96 44.05 29.54 68.60 2.03 46.07 15 9 H -0.27 -11.99 7.11 99.48 0.71 -11.29 15 10 H -0.28 -12.60 7.11 99.48 0.71 -11.89 15 11 H -0.27 -12.24 7.11 99.48 0.71 -11.53 15 12 C -0.13 -5.51 4.75 -19.78 -0.09 -5.60 15 13 C 0.12 4.44 6.69 22.37 0.15 4.59 15 14 F -0.13 -5.29 14.39 44.97 0.65 -4.65 15 15 C -0.14 -3.44 10.02 22.32 0.22 -3.22 15 16 C -0.06 -1.26 9.82 22.28 0.22 -1.04 15 17 C -0.09 -2.53 6.32 22.36 0.14 -2.39 15 18 Cl -0.04 -1.15 28.62 -2.72 -0.08 -1.22 15 19 C 0.10 3.99 7.22 22.39 0.16 4.16 15 20 F -0.14 -5.82 15.76 44.97 0.71 -5.11 15 21 H 0.04 2.01 6.33 -2.39 -0.02 2.00 15 22 H 0.02 1.09 8.14 -2.39 -0.02 1.07 15 23 H 0.06 3.57 6.07 -2.39 -0.01 3.55 15 24 H 0.26 14.60 8.31 -92.71 -0.77 13.83 15 25 H 0.19 3.11 8.06 -2.91 -0.02 3.09 15 26 H 0.19 2.53 8.06 -2.91 -0.02 2.51 15 Total: -1.00 -63.18 249.46 6.81 -56.37 By element: Atomic # 1 Polarization: -6.44 SS G_CDS: 1.22 Total: -5.23 kcal Atomic # 6 Polarization: -35.12 SS G_CDS: 2.05 Total: -33.07 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: 0.24 Total: -53.17 kcal Atomic # 9 Polarization: -11.11 SS G_CDS: 1.36 Total: -9.75 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -0.08 Total: -1.22 kcal Total: -63.18 6.81 -56.37 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260905402.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.638 kcal (2) G-P(sol) polarization free energy of solvation -63.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds