Wall clock time and date at job start Mon Mar 30 2020 05:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86797 * 120.00271 * 2 1 4 4 H 1.48502 * 109.47473 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46951 * 299.99951 * 3 2 1 6 6 H 1.48504 * 109.47223 * 59.99750 * 3 2 1 7 7 C 1.37876 * 119.99822 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00331 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00107 * 0.02562 * 7 2 1 10 10 C 1.50705 * 109.47353 * 179.97438 * 9 7 2 11 11 C 1.36130 * 120.17092 * 265.00373 * 10 9 7 12 12 C 1.39329 * 120.99130 * 180.28087 * 11 10 9 13 13 C 1.36132 * 120.98323 * 359.46765 * 12 11 10 14 14 C 1.40511 * 119.65244 * 0.52163 * 13 12 11 15 15 C 1.40531 * 121.27519 * 179.76372 * 14 13 12 16 16 C 1.36193 * 119.65031 * 179.97438 * 15 14 13 17 17 Cl 1.73598 * 119.52372 * 180.02562 * 16 15 14 18 18 C 1.39497 * 120.95872 * 0.02562 * 16 15 14 19 19 C 1.36055 * 120.98329 * 359.97438 * 18 16 15 20 20 C 1.40490 * 120.16664 * 85.01867 * 10 9 7 21 21 H 0.97010 * 119.99924 * 0.02562 * 1 2 3 22 22 H 1.09005 * 109.47351 * 59.99783 * 9 7 2 23 23 H 1.08993 * 109.47164 * 299.99922 * 9 7 2 24 24 H 1.08002 * 119.50229 * 359.97438 * 11 10 9 25 25 H 1.07995 * 119.51168 * 179.74387 * 12 11 10 26 26 H 1.08002 * 120.17507 * 180.26501 * 13 12 11 27 27 H 1.08002 * 120.17446 * 0.02562 * 15 14 13 28 28 H 1.08005 * 119.50597 * 180.02562 * 18 16 15 29 29 H 1.08004 * 120.16887 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 6 2.5968 -4.2313 -1.1719 12 6 3.4963 -5.2952 -1.1913 13 6 4.0428 -5.7719 -0.0392 14 6 3.6884 -5.1916 1.1905 15 6 4.2279 -5.6599 2.4006 16 6 3.8616 -5.0727 3.5736 17 17 4.5307 -5.6533 5.0665 18 6 2.9565 -4.0113 3.5928 19 6 2.4144 -3.5323 2.4406 20 6 2.7691 -4.1128 1.2106 21 1 -0.4850 0.8401 -0.0004 22 1 0.6245 -2.5571 -0.8897 23 1 0.6240 -2.5567 0.8902 24 1 2.1804 -3.8698 -2.1005 25 1 3.7674 -5.7455 -2.1346 26 1 4.7421 -6.5944 -0.0698 27 1 4.9300 -6.4806 2.4004 28 1 2.6827 -3.5627 4.5364 29 1 1.7145 -2.7102 2.4708 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260929385.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:59 Heat of formation + Delta-G solvation = 17.943215 kcal Electronic energy + Delta-G solvation = -14672.493799 eV Core-core repulsion = 12164.342231 eV Total energy + Delta-G solvation = -2508.151568 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.051 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.00702 -36.91862 -35.52406 -33.95594 -32.15119 -29.84694 -29.39104 -27.05067 -23.53763 -22.81691 -22.52027 -20.00318 -17.17789 -16.63601 -16.37250 -15.96172 -14.62894 -14.36996 -13.80310 -13.56639 -13.38585 -12.86274 -12.55018 -12.38736 -11.92030 -11.72395 -11.38496 -11.11360 -10.90592 -10.78098 -10.52682 -10.44986 -10.31317 -9.76376 -9.53445 -9.05671 -8.50837 -8.13139 -7.29918 -6.12676 -4.17555 0.94408 1.34161 2.31085 2.51321 3.24742 3.32453 3.34501 3.39076 4.35284 4.59241 4.98949 5.18222 5.21747 5.38328 5.42379 5.50154 5.71225 5.82626 5.88687 6.18752 6.33484 6.45014 6.54048 6.66797 6.71250 6.98303 7.04605 7.19175 7.37769 7.53101 7.68510 7.82773 8.19830 8.87889 9.47290 10.96500 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.022291 B = 0.006916 C = 0.005723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.783330 B = 4047.873520 C = 4891.182023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.513 4.513 8 H 0.058 0.942 9 C 0.044 3.956 10 C -0.009 4.009 11 C -0.143 4.143 12 C -0.094 4.094 13 C -0.146 4.146 14 C -0.038 4.038 15 C -0.113 4.113 16 C -0.024 4.024 17 Cl -0.090 7.090 18 C -0.142 4.142 19 C -0.053 4.053 20 C -0.055 4.055 21 H 0.263 0.737 22 H 0.033 0.967 23 H 0.034 0.966 24 H 0.121 0.879 25 H 0.115 0.885 26 H 0.118 0.882 27 H 0.129 0.871 28 H 0.128 0.872 29 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.384 -10.369 3.841 12.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.721 3.279 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.551 4.551 8 H 0.076 0.924 9 C 0.008 3.992 10 C -0.009 4.009 11 C -0.161 4.161 12 C -0.112 4.112 13 C -0.164 4.164 14 C -0.039 4.039 15 C -0.132 4.132 16 C -0.050 4.050 17 Cl -0.061 7.061 18 C -0.160 4.160 19 C -0.071 4.071 20 C -0.055 4.055 21 H 0.072 0.928 22 H 0.051 0.949 23 H 0.052 0.948 24 H 0.139 0.861 25 H 0.134 0.866 26 H 0.136 0.864 27 H 0.147 0.853 28 H 0.145 0.855 29 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 6.291 -10.302 3.979 12.710 hybrid contribution 0.580 0.905 0.095 1.079 sum 6.871 -9.396 4.074 12.333 Atomic orbital electron populations 1.69958 1.06009 1.26879 1.50184 1.24986 0.94866 0.99244 0.95008 0.86495 0.80217 0.83430 0.77718 1.19616 1.20886 1.20850 1.21037 0.93087 0.89542 1.51399 0.92359 1.18440 0.92534 0.89444 0.98805 1.20631 0.94989 0.94363 0.90961 1.20773 0.99780 0.97064 0.98486 1.20834 0.96379 0.96329 0.97679 1.20706 1.02452 1.01550 0.91661 1.17916 0.96929 0.95953 0.93060 1.20746 1.01247 1.00792 0.90373 1.20559 0.99617 0.98474 0.86381 1.98334 1.84873 1.88335 1.34579 1.20635 0.98775 0.97133 0.99497 1.21382 0.97438 0.97792 0.90465 1.18163 0.97336 0.95591 0.94371 0.92768 0.94894 0.94813 0.86091 0.86646 0.86374 0.85340 0.85453 0.83249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.28 13.29 55.43 0.74 -24.54 15 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 15 3 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 15 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 15 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 7 C -0.51 -13.69 9.09 -34.44 -0.31 -14.00 15 8 H 0.06 1.58 7.74 -52.48 -0.41 1.17 15 9 C 0.04 1.08 4.50 -29.03 -0.13 0.95 15 10 C -0.01 -0.20 5.08 -104.53 -0.53 -0.73 15 11 C -0.14 -2.66 9.57 -39.93 -0.38 -3.04 15 12 C -0.09 -1.48 9.95 -39.93 -0.40 -1.87 15 13 C -0.15 -2.24 9.77 -39.48 -0.39 -2.63 15 14 C -0.04 -0.66 5.74 -106.83 -0.61 -1.27 15 15 C -0.11 -1.73 9.51 -39.45 -0.38 -2.11 15 16 C -0.02 -0.37 6.28 -39.85 -0.25 -0.62 15 17 Cl -0.09 -1.20 28.91 -51.86 -1.50 -2.70 15 18 C -0.14 -2.32 9.72 -39.90 -0.39 -2.71 15 19 C -0.05 -0.99 9.28 -39.49 -0.37 -1.36 15 20 C -0.05 -1.07 5.74 -106.83 -0.61 -1.68 15 21 H 0.26 7.05 8.31 -40.82 -0.34 6.71 15 22 H 0.03 0.84 8.04 -51.93 -0.42 0.42 15 23 H 0.03 0.85 6.70 -51.93 -0.35 0.50 15 24 H 0.12 2.15 8.05 -52.49 -0.42 1.73 15 25 H 0.12 1.44 8.06 -52.49 -0.42 1.02 15 26 H 0.12 1.45 8.06 -52.49 -0.42 1.03 15 27 H 0.13 1.64 8.06 -52.49 -0.42 1.22 15 28 H 0.13 1.82 8.06 -52.48 -0.42 1.40 15 29 H 0.15 2.96 6.48 -52.48 -0.34 2.62 15 LS Contribution 270.29 15.07 4.07 4.07 Total: -1.00 -27.87 270.29 -9.31 -37.18 By element: Atomic # 1 Polarization: 2.31 SS G_CDS: -2.76 Total: -0.45 kcal Atomic # 6 Polarization: -24.66 SS G_CDS: -4.84 Total: -29.51 kcal Atomic # 7 Polarization: -25.28 SS G_CDS: 0.74 Total: -24.54 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -1.50 Total: -2.70 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -27.87 -9.31 -37.18 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260929385.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.127 kcal (2) G-P(sol) polarization free energy of solvation -27.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds