Wall clock time and date at job start Mon Mar 30 2020 05:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86797 * 120.00271 * 2 1 4 4 H 1.48502 * 109.47473 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46951 * 299.99951 * 3 2 1 6 6 H 1.48504 * 109.47223 * 59.99750 * 3 2 1 7 7 C 1.37876 * 119.99822 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00331 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00107 * 0.02562 * 7 2 1 10 10 C 1.50705 * 109.47353 * 179.97438 * 9 7 2 11 11 C 1.36130 * 120.17092 * 265.00373 * 10 9 7 12 12 C 1.39329 * 120.99130 * 180.28087 * 11 10 9 13 13 C 1.36132 * 120.98323 * 359.46765 * 12 11 10 14 14 C 1.40511 * 119.65244 * 0.52163 * 13 12 11 15 15 C 1.40531 * 121.27519 * 179.76372 * 14 13 12 16 16 C 1.36193 * 119.65031 * 179.97438 * 15 14 13 17 17 Cl 1.73598 * 119.52372 * 180.02562 * 16 15 14 18 18 C 1.39497 * 120.95872 * 0.02562 * 16 15 14 19 19 C 1.36055 * 120.98329 * 359.97438 * 18 16 15 20 20 C 1.40490 * 120.16664 * 85.01867 * 10 9 7 21 21 H 0.97010 * 119.99924 * 0.02562 * 1 2 3 22 22 H 1.09005 * 109.47351 * 59.99783 * 9 7 2 23 23 H 1.08993 * 109.47164 * 299.99922 * 9 7 2 24 24 H 1.08002 * 119.50229 * 359.97438 * 11 10 9 25 25 H 1.07995 * 119.51168 * 179.74387 * 12 11 10 26 26 H 1.08002 * 120.17507 * 180.26501 * 13 12 11 27 27 H 1.08002 * 120.17446 * 0.02562 * 15 14 13 28 28 H 1.08005 * 119.50597 * 180.02562 * 18 16 15 29 29 H 1.08004 * 120.16887 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 6 2.5968 -4.2313 -1.1719 12 6 3.4963 -5.2952 -1.1913 13 6 4.0428 -5.7719 -0.0392 14 6 3.6884 -5.1916 1.1905 15 6 4.2279 -5.6599 2.4006 16 6 3.8616 -5.0727 3.5736 17 17 4.5307 -5.6533 5.0665 18 6 2.9565 -4.0113 3.5928 19 6 2.4144 -3.5323 2.4406 20 6 2.7691 -4.1128 1.2106 21 1 -0.4850 0.8401 -0.0004 22 1 0.6245 -2.5571 -0.8897 23 1 0.6240 -2.5567 0.8902 24 1 2.1804 -3.8698 -2.1005 25 1 3.7674 -5.7455 -2.1346 26 1 4.7421 -6.5944 -0.0698 27 1 4.9300 -6.4806 2.4004 28 1 2.6827 -3.5627 4.5364 29 1 1.7145 -2.7102 2.4708 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260929385.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:58 Heat of formation + Delta-G solvation = 5.162847 kcal Electronic energy + Delta-G solvation = -14673.047997 eV Core-core repulsion = 12164.342231 eV Total energy + Delta-G solvation = -2508.705766 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.051 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.34927 -38.15441 -36.78396 -35.69332 -33.90294 -31.22688 -30.82417 -28.78233 -25.33998 -24.23499 -23.84750 -21.48114 -18.53287 -18.47916 -17.91540 -17.29450 -16.52372 -15.68866 -15.18659 -14.95277 -14.68778 -14.39035 -14.27389 -13.81052 -13.31053 -13.26597 -13.04921 -12.72854 -12.62292 -12.29498 -12.07551 -11.76702 -11.74925 -11.55951 -11.24099 -10.62921 -10.56047 -9.43984 -8.70177 -8.19503 -6.34077 -0.37958 0.01383 1.12401 1.15655 1.37543 1.39475 1.51746 2.02146 2.39106 3.09692 3.20173 3.72134 3.95401 4.04810 4.14625 4.28637 4.41527 4.46345 4.55129 4.82833 4.98746 5.11286 5.19890 5.25305 5.31839 5.37972 5.43532 5.63716 5.72566 5.83157 6.03545 6.08366 6.20938 6.77530 7.34398 8.87582 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.022291 B = 0.006916 C = 0.005723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.783330 B = 4047.873520 C = 4891.182023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.010 3.990 3 Si 0.959 3.041 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.521 4.521 8 H 0.050 0.950 9 C 0.057 3.943 10 C -0.053 4.053 11 C -0.142 4.142 12 C -0.099 4.099 13 C -0.124 4.124 14 C -0.055 4.055 15 C -0.097 4.097 16 C -0.034 4.034 17 Cl -0.066 7.066 18 C -0.128 4.128 19 C -0.086 4.086 20 C -0.071 4.071 21 H 0.266 0.734 22 H 0.006 0.994 23 H 0.010 0.990 24 H 0.118 0.882 25 H 0.155 0.845 26 H 0.163 0.837 27 H 0.165 0.835 28 H 0.143 0.857 29 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.024 -12.112 4.139 15.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.188 4.188 3 Si 0.784 3.216 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.559 4.559 8 H 0.068 0.932 9 C 0.020 3.980 10 C -0.053 4.053 11 C -0.160 4.160 12 C -0.117 4.117 13 C -0.142 4.142 14 C -0.055 4.055 15 C -0.115 4.115 16 C -0.061 4.061 17 Cl -0.037 7.037 18 C -0.147 4.147 19 C -0.104 4.104 20 C -0.071 4.071 21 H 0.075 0.925 22 H 0.024 0.976 23 H 0.029 0.971 24 H 0.136 0.864 25 H 0.173 0.827 26 H 0.181 0.819 27 H 0.182 0.818 28 H 0.161 0.839 29 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 8.935 -12.053 4.280 15.602 hybrid contribution -0.197 1.324 0.071 1.340 sum 8.738 -10.729 4.351 14.505 Atomic orbital electron populations 1.70070 1.07482 1.27844 1.51255 1.25814 0.95671 1.02723 0.94641 0.85481 0.78922 0.79200 0.77991 1.19225 1.20148 1.20186 1.21274 0.92772 0.90994 1.50872 0.93200 1.18115 0.92813 0.90821 0.96243 1.20334 0.96746 0.95171 0.93038 1.20954 0.99958 0.97672 0.97403 1.21150 0.95427 0.95279 0.99846 1.21233 1.01365 1.01265 0.90340 1.18210 0.96746 0.95532 0.95010 1.21095 1.00435 1.00696 0.89273 1.20607 0.99504 0.98218 0.87751 1.98343 1.84370 1.87914 1.33038 1.20796 0.97855 0.96872 0.99137 1.21186 0.98949 0.98597 0.91718 1.18283 0.98282 0.96808 0.93729 0.92546 0.97568 0.97145 0.86392 0.82716 0.81907 0.81798 0.83946 0.86086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.78 13.29 21.45 0.28 -54.49 15 2 C 0.01 0.56 5.46 84.66 0.46 1.03 15 3 Si 0.96 43.97 29.54 68.60 2.03 45.99 15 4 H -0.27 -12.00 7.11 99.48 0.71 -11.30 15 5 H -0.28 -12.27 7.11 99.48 0.71 -11.57 15 6 H -0.28 -12.31 7.11 99.48 0.71 -11.60 15 7 C -0.52 -29.25 9.09 25.60 0.23 -29.02 15 8 H 0.05 2.81 7.74 -2.91 -0.02 2.79 15 9 C 0.06 2.99 4.50 29.10 0.13 3.12 15 10 C -0.05 -2.32 5.08 -19.80 -0.10 -2.42 15 11 C -0.14 -5.30 9.57 22.04 0.21 -5.08 15 12 C -0.10 -2.82 9.95 22.04 0.22 -2.60 15 13 C -0.12 -3.32 9.77 22.33 0.22 -3.10 15 14 C -0.05 -1.76 5.74 -21.30 -0.12 -1.88 15 15 C -0.10 -2.62 9.51 22.35 0.21 -2.41 15 16 C -0.03 -0.98 6.28 22.10 0.14 -0.84 15 17 Cl -0.07 -1.55 28.91 -2.72 -0.08 -1.63 15 18 C -0.13 -4.14 9.72 22.07 0.21 -3.93 15 19 C -0.09 -3.39 9.28 22.33 0.21 -3.18 15 20 C -0.07 -2.83 5.74 -21.30 -0.12 -2.96 15 21 H 0.27 14.72 8.31 -92.70 -0.77 13.95 15 22 H 0.01 0.34 8.04 -2.38 -0.02 0.32 15 23 H 0.01 0.58 6.70 -2.39 -0.02 0.56 15 24 H 0.12 4.31 8.05 -2.91 -0.02 4.29 15 25 H 0.16 3.16 8.06 -2.91 -0.02 3.14 15 26 H 0.16 2.92 8.06 -2.91 -0.02 2.89 15 27 H 0.16 3.27 8.06 -2.91 -0.02 3.24 15 28 H 0.14 4.01 8.06 -2.91 -0.02 3.99 15 29 H 0.12 5.31 6.48 -2.91 -0.02 5.29 15 Total: -1.00 -62.71 270.29 5.29 -57.41 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: 1.16 Total: 6.00 kcal Atomic # 6 Polarization: -55.19 SS G_CDS: 1.90 Total: -53.28 kcal Atomic # 7 Polarization: -54.78 SS G_CDS: 0.28 Total: -54.49 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Atomic # 17 Polarization: -1.55 SS G_CDS: -0.08 Total: -1.63 kcal Total: -62.71 5.29 -57.41 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260929385.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.577 kcal (2) G-P(sol) polarization free energy of solvation -62.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds