Wall clock time and date at job start Mon Mar 30 2020 05:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99908 * 2 1 4 4 H 1.48501 * 109.47138 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47400 * 300.00243 * 3 2 1 6 6 H 1.48499 * 109.46984 * 60.00639 * 3 2 1 7 7 C 1.37877 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99831 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00022 * 359.97438 * 7 2 1 10 10 C 1.50699 * 109.47378 * 180.02562 * 9 7 2 11 11 C 1.39375 * 119.50721 * 90.00024 * 10 9 7 12 12 C 1.36094 * 120.99140 * 180.02562 * 11 10 9 13 13 C 1.40548 * 119.65371 * 359.97438 * 12 11 10 14 14 C 1.40516 * 121.28034 * 179.97438 * 13 12 11 15 15 C 1.36202 * 119.65076 * 180.02562 * 14 13 12 16 16 Cl 1.73603 * 119.51915 * 179.97438 * 15 14 13 17 17 C 1.39486 * 120.96045 * 0.02562 * 15 14 13 18 18 C 1.36069 * 120.97268 * 359.95959 * 17 15 14 19 19 C 1.40547 * 119.67248 * 0.03968 * 18 17 15 20 20 C 1.36092 * 119.50774 * 270.23961 * 10 9 7 21 21 H 0.96997 * 119.99604 * 359.97438 * 1 2 3 22 22 H 1.09003 * 109.47020 * 60.00722 * 9 7 2 23 23 H 1.09004 * 109.47429 * 300.00638 * 9 7 2 24 24 H 1.08004 * 119.50737 * 0.02562 * 11 10 9 25 25 H 1.07992 * 120.17192 * 179.97438 * 12 11 10 26 26 H 1.08003 * 120.17420 * 0.04206 * 14 13 12 27 27 H 1.08003 * 119.51448 * 180.02562 * 17 15 14 28 28 H 1.08001 * 120.16066 * 180.02562 * 18 17 15 29 29 H 1.08004 * 120.16993 * 359.74679 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 6 2.6764 -4.1664 1.2124 12 6 3.5608 -5.2001 1.2477 13 6 4.0331 -5.7525 0.0447 14 6 4.9470 -6.8199 0.0412 15 6 5.3833 -7.3295 -1.1441 16 17 6.5129 -8.6478 -1.1445 17 6 4.9366 -6.8069 -2.3578 18 6 4.0517 -5.7738 -2.3920 19 6 3.5793 -5.2222 -1.1887 20 6 2.6697 -4.1508 -1.1849 21 1 -0.4849 0.8401 0.0004 22 1 0.6242 -2.5567 -0.8904 23 1 0.6246 -2.5570 0.8896 24 1 2.3148 -3.7440 2.1384 25 1 3.8980 -5.5939 2.1950 26 1 5.3014 -7.2342 0.9735 27 1 5.2975 -7.2292 -3.2840 28 1 3.7141 -5.3796 -3.3392 29 1 2.3152 -3.7365 -2.1172 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260943296.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:01 Heat of formation + Delta-G solvation = 16.023781 kcal Electronic energy + Delta-G solvation = -14318.530762 eV Core-core repulsion = 11810.295961 eV Total energy + Delta-G solvation = -2508.234801 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.051 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.05688 -37.10295 -35.86993 -33.30866 -32.36117 -30.61822 -29.23393 -26.96037 -23.69006 -23.02024 -21.69866 -21.00013 -17.19586 -16.66040 -16.39619 -15.83862 -14.60581 -14.48308 -14.09915 -13.69934 -13.35557 -13.13780 -12.58830 -12.46959 -12.02128 -11.81696 -11.39176 -11.21476 -11.02511 -10.70968 -10.58700 -10.47289 -10.38668 -9.76530 -9.60435 -9.29954 -8.50151 -8.08073 -7.45371 -6.11776 -4.16351 0.78471 1.25271 2.18939 2.38063 3.24036 3.24956 3.33324 3.38550 4.34399 4.51128 4.78341 4.99538 5.22829 5.26107 5.32230 5.45198 5.52855 5.79028 5.88802 5.95723 6.19622 6.28774 6.39377 6.54764 6.60544 6.95571 7.00495 7.04091 7.37399 7.51415 7.70713 7.83721 8.21674 8.89119 9.48216 10.97890 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.045175 B = 0.004580 C = 0.004503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.660557 B = 6111.977075 C = 6217.072864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.514 4.514 8 H 0.058 0.942 9 C 0.044 3.956 10 C -0.024 4.024 11 C -0.093 4.093 12 C -0.119 4.119 13 C -0.061 4.061 14 C -0.089 4.089 15 C -0.046 4.046 16 Cl -0.089 7.089 17 C -0.123 4.123 18 C -0.090 4.090 19 C -0.042 4.042 20 C -0.124 4.124 21 H 0.262 0.738 22 H 0.031 0.969 23 H 0.031 0.969 24 H 0.124 0.876 25 H 0.122 0.878 26 H 0.130 0.870 27 H 0.126 0.874 28 H 0.133 0.867 29 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.408 -13.227 -1.606 15.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.552 4.552 8 H 0.076 0.924 9 C 0.008 3.992 10 C -0.024 4.024 11 C -0.111 4.111 12 C -0.137 4.137 13 C -0.061 4.061 14 C -0.108 4.108 15 C -0.072 4.072 16 Cl -0.060 7.060 17 C -0.142 4.142 18 C -0.108 4.108 19 C -0.042 4.042 20 C -0.142 4.142 21 H 0.072 0.928 22 H 0.050 0.950 23 H 0.049 0.951 24 H 0.142 0.858 25 H 0.140 0.860 26 H 0.148 0.852 27 H 0.144 0.856 28 H 0.150 0.850 29 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 8.358 -13.228 -1.609 15.730 hybrid contribution 0.570 0.859 0.014 1.031 sum 8.928 -12.370 -1.595 15.338 Atomic orbital electron populations 1.69961 1.06045 1.26852 1.50275 1.25013 0.94897 0.99327 0.95046 0.86471 0.80153 0.83368 0.77696 1.19625 1.20881 1.20880 1.21069 0.93092 0.89713 1.51307 0.92351 1.18446 0.92556 0.89549 0.98694 1.20500 0.95476 0.94671 0.91779 1.21005 0.96327 0.95096 0.98719 1.20905 0.98754 0.97740 0.96333 1.17847 0.98127 0.96549 0.93593 1.20844 0.97090 0.96044 0.96829 1.20441 0.97621 0.93900 0.95227 1.98339 1.60908 1.47730 1.99010 1.20557 0.99294 0.98005 0.96309 1.20999 0.96498 0.95538 0.97734 1.18210 0.97261 0.96350 0.92411 1.20915 0.98267 0.96029 0.99002 0.92794 0.95046 0.95079 0.85769 0.86026 0.85163 0.85574 0.84961 0.85540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.72 13.29 55.43 0.74 -24.98 15 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 15 3 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 15 4 H -0.27 -6.33 7.11 56.52 0.40 -5.92 15 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 15 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 7 C -0.51 -13.93 9.09 -34.44 -0.31 -14.24 15 8 H 0.06 1.58 7.74 -52.49 -0.41 1.18 15 9 C 0.04 1.09 5.07 -29.04 -0.15 0.94 15 10 C -0.02 -0.50 5.03 -104.97 -0.53 -1.03 15 11 C -0.09 -1.71 9.58 -39.93 -0.38 -2.09 15 12 C -0.12 -1.89 9.77 -39.48 -0.39 -2.28 15 13 C -0.06 -0.98 5.74 -106.84 -0.61 -1.59 15 14 C -0.09 -1.25 9.51 -39.46 -0.38 -1.62 15 15 C -0.05 -0.61 6.28 -39.85 -0.25 -0.86 15 16 Cl -0.09 -1.05 28.91 -51.86 -1.50 -2.54 15 17 C -0.12 -1.61 9.72 -39.90 -0.39 -1.99 15 18 C -0.09 -1.27 9.77 -39.49 -0.39 -1.65 15 19 C -0.04 -0.71 5.74 -106.83 -0.61 -1.32 15 20 C -0.12 -2.34 9.37 -39.48 -0.37 -2.71 15 21 H 0.26 7.13 8.31 -40.82 -0.34 6.79 15 22 H 0.03 0.81 8.07 -51.93 -0.42 0.39 15 23 H 0.03 0.80 8.08 -51.93 -0.42 0.38 15 24 H 0.12 2.15 8.06 -52.48 -0.42 1.73 15 25 H 0.12 1.55 8.06 -52.49 -0.42 1.13 15 26 H 0.13 1.54 8.06 -52.48 -0.42 1.12 15 27 H 0.13 1.35 8.06 -52.48 -0.42 0.93 15 28 H 0.13 1.58 8.06 -52.49 -0.42 1.16 15 29 H 0.13 2.29 8.06 -52.48 -0.42 1.86 15 LS Contribution 273.74 15.07 4.13 4.13 Total: -1.00 -28.47 273.74 -9.43 -37.90 By element: Atomic # 1 Polarization: 1.27 SS G_CDS: -2.92 Total: -1.65 kcal Atomic # 6 Polarization: -24.07 SS G_CDS: -4.85 Total: -28.92 kcal Atomic # 7 Polarization: -25.72 SS G_CDS: 0.74 Total: -24.98 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -1.50 Total: -2.54 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -28.47 -9.43 -37.90 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260943296.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.921 kcal (2) G-P(sol) polarization free energy of solvation -28.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds