Wall clock time and date at job start Mon Mar 30 2020 05:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99908 * 2 1 4 4 H 1.48501 * 109.47138 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47400 * 300.00243 * 3 2 1 6 6 H 1.48499 * 109.46984 * 60.00639 * 3 2 1 7 7 C 1.37877 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99831 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00022 * 359.97438 * 7 2 1 10 10 C 1.50699 * 109.47378 * 180.02562 * 9 7 2 11 11 C 1.39375 * 119.50721 * 90.00024 * 10 9 7 12 12 C 1.36094 * 120.99140 * 180.02562 * 11 10 9 13 13 C 1.40548 * 119.65371 * 359.97438 * 12 11 10 14 14 C 1.40516 * 121.28034 * 179.97438 * 13 12 11 15 15 C 1.36202 * 119.65076 * 180.02562 * 14 13 12 16 16 Cl 1.73603 * 119.51915 * 179.97438 * 15 14 13 17 17 C 1.39486 * 120.96045 * 0.02562 * 15 14 13 18 18 C 1.36069 * 120.97268 * 359.95959 * 17 15 14 19 19 C 1.40547 * 119.67248 * 0.03968 * 18 17 15 20 20 C 1.36092 * 119.50774 * 270.23961 * 10 9 7 21 21 H 0.96997 * 119.99604 * 359.97438 * 1 2 3 22 22 H 1.09003 * 109.47020 * 60.00722 * 9 7 2 23 23 H 1.09004 * 109.47429 * 300.00638 * 9 7 2 24 24 H 1.08004 * 119.50737 * 0.02562 * 11 10 9 25 25 H 1.07992 * 120.17192 * 179.97438 * 12 11 10 26 26 H 1.08003 * 120.17420 * 0.04206 * 14 13 12 27 27 H 1.08003 * 119.51448 * 180.02562 * 17 15 14 28 28 H 1.08001 * 120.16066 * 180.02562 * 18 17 15 29 29 H 1.08004 * 120.16993 * 359.74679 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 6 2.6764 -4.1664 1.2124 12 6 3.5608 -5.2001 1.2477 13 6 4.0331 -5.7525 0.0447 14 6 4.9470 -6.8199 0.0412 15 6 5.3833 -7.3295 -1.1441 16 17 6.5129 -8.6478 -1.1445 17 6 4.9366 -6.8069 -2.3578 18 6 4.0517 -5.7738 -2.3920 19 6 3.5793 -5.2222 -1.1887 20 6 2.6697 -4.1508 -1.1849 21 1 -0.4849 0.8401 0.0004 22 1 0.6242 -2.5567 -0.8904 23 1 0.6246 -2.5570 0.8896 24 1 2.3148 -3.7440 2.1384 25 1 3.8980 -5.5939 2.1950 26 1 5.3014 -7.2342 0.9735 27 1 5.2975 -7.2292 -3.2840 28 1 3.7141 -5.3796 -3.3392 29 1 2.3152 -3.7365 -2.1172 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260943296.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:01 Heat of formation + Delta-G solvation = 2.964901 kcal Electronic energy + Delta-G solvation = -14319.097037 eV Core-core repulsion = 11810.295961 eV Total energy + Delta-G solvation = -2508.801076 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.051 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.29886 -38.29369 -37.04202 -35.16731 -33.74282 -32.14606 -30.50535 -28.65951 -25.45050 -24.28084 -22.92194 -22.50769 -18.54875 -18.41809 -17.81868 -17.20150 -16.41613 -15.71310 -15.38929 -14.92321 -14.70894 -14.41292 -14.28130 -13.94229 -13.33452 -13.30128 -13.04782 -12.79340 -12.56253 -12.33536 -12.05214 -11.83445 -11.65786 -11.43839 -11.34669 -10.74042 -10.62555 -9.37477 -8.76243 -8.21069 -6.35228 -0.41535 0.00783 1.11285 1.14898 1.38730 1.39740 1.52749 1.99966 2.40031 3.09112 3.16768 3.66690 3.91792 4.05146 4.12605 4.24085 4.33150 4.48074 4.53567 4.80867 4.95658 5.05543 5.15566 5.20246 5.32134 5.34846 5.40436 5.60424 5.73017 5.79979 6.00919 6.05200 6.18626 6.77551 7.33579 8.87351 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.045175 B = 0.004580 C = 0.004503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.660557 B = 6111.977075 C = 6217.072864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.005 3.995 3 Si 0.964 3.036 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.527 4.527 8 H 0.054 0.946 9 C 0.054 3.946 10 C -0.053 4.053 11 C -0.117 4.117 12 C -0.101 4.101 13 C -0.072 4.072 14 C -0.090 4.090 15 C -0.046 4.046 16 Cl -0.068 7.068 17 C -0.112 4.112 18 C -0.098 4.098 19 C -0.056 4.056 20 C -0.131 4.131 21 H 0.266 0.734 22 H 0.005 0.995 23 H 0.007 0.993 24 H 0.123 0.877 25 H 0.158 0.842 26 H 0.155 0.845 27 H 0.154 0.846 28 H 0.151 0.849 29 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.880 -14.676 -1.836 18.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.193 4.193 3 Si 0.789 3.211 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.565 4.565 8 H 0.072 0.928 9 C 0.017 3.983 10 C -0.053 4.053 11 C -0.135 4.135 12 C -0.118 4.118 13 C -0.072 4.072 14 C -0.108 4.108 15 C -0.072 4.072 16 Cl -0.040 7.040 17 C -0.131 4.131 18 C -0.116 4.116 19 C -0.056 4.056 20 C -0.149 4.149 21 H 0.075 0.925 22 H 0.024 0.976 23 H 0.026 0.974 24 H 0.141 0.859 25 H 0.175 0.825 26 H 0.173 0.827 27 H 0.172 0.828 28 H 0.168 0.832 29 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 10.838 -14.691 -1.840 18.349 hybrid contribution -0.094 1.104 0.019 1.108 sum 10.744 -13.588 -1.821 17.417 Atomic orbital electron populations 1.70078 1.07607 1.27920 1.51259 1.25904 0.95757 1.03044 0.94590 0.85404 0.78906 0.78826 0.77976 1.19018 1.20199 1.20124 1.21374 0.93030 0.91151 1.50964 0.92810 1.18172 0.92907 0.91039 0.96193 1.20186 0.96501 0.94855 0.93807 1.20969 0.98135 0.96781 0.97664 1.21221 0.96704 0.95940 0.97955 1.18113 0.98597 0.97231 0.93302 1.21042 0.96301 0.95195 0.98279 1.20648 0.97312 0.93993 0.95259 1.98355 1.60023 1.46598 1.98979 1.20895 0.97852 0.96840 0.97463 1.21201 0.96842 0.95969 0.97561 1.18367 0.97150 0.95998 0.94133 1.20915 0.98927 0.96912 0.98105 0.92529 0.97623 0.97431 0.85890 0.82456 0.82699 0.82806 0.83176 0.86062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.30 13.29 21.45 0.28 -55.02 15 2 C 0.01 0.30 5.46 84.65 0.46 0.77 15 3 Si 0.96 43.88 29.54 68.60 2.03 45.91 15 4 H -0.27 -11.74 7.11 99.48 0.71 -11.03 15 5 H -0.28 -12.22 7.11 99.48 0.71 -11.51 15 6 H -0.28 -12.16 7.11 99.48 0.71 -11.45 15 7 C -0.53 -29.73 9.09 25.60 0.23 -29.50 15 8 H 0.05 3.01 7.74 -2.91 -0.02 2.98 15 9 C 0.05 2.83 5.07 29.10 0.15 2.98 15 10 C -0.05 -2.31 5.03 -20.09 -0.10 -2.41 15 11 C -0.12 -4.37 9.58 22.04 0.21 -4.16 15 12 C -0.10 -3.03 9.77 22.33 0.22 -2.82 15 13 C -0.07 -2.18 5.74 -21.30 -0.12 -2.30 15 14 C -0.09 -2.19 9.51 22.35 0.21 -1.98 15 15 C -0.05 -1.06 6.28 22.10 0.14 -0.92 15 16 Cl -0.07 -1.35 28.91 -2.72 -0.08 -1.43 15 17 C -0.11 -2.54 9.72 22.07 0.21 -2.32 15 18 C -0.10 -2.57 9.77 22.33 0.22 -2.35 15 19 C -0.06 -1.85 5.74 -21.29 -0.12 -1.97 15 20 C -0.13 -5.07 9.37 22.33 0.21 -4.86 15 21 H 0.27 14.80 8.31 -92.71 -0.77 14.03 15 22 H 0.01 0.31 8.07 -2.39 -0.02 0.29 15 23 H 0.01 0.41 8.08 -2.38 -0.02 0.39 15 24 H 0.12 4.44 8.06 -2.91 -0.02 4.42 15 25 H 0.16 3.51 8.06 -2.91 -0.02 3.49 15 26 H 0.16 2.99 8.06 -2.91 -0.02 2.96 15 27 H 0.15 2.62 8.06 -2.91 -0.02 2.60 15 28 H 0.15 3.30 8.06 -2.91 -0.02 3.28 15 29 H 0.12 4.63 8.06 -2.91 -0.02 4.61 15 Total: -1.00 -62.65 273.74 5.30 -57.35 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: 1.15 Total: 5.05 kcal Atomic # 6 Polarization: -53.77 SS G_CDS: 1.92 Total: -51.85 kcal Atomic # 7 Polarization: -55.30 SS G_CDS: 0.28 Total: -55.02 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Atomic # 17 Polarization: -1.35 SS G_CDS: -0.08 Total: -1.43 kcal Total: -62.65 5.30 -57.35 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260943296.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.311 kcal (2) G-P(sol) polarization free energy of solvation -62.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds