Wall clock time and date at job start Mon Mar 30 2020 06:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46725 * 239.99880 * 3 2 1 5 5 H 1.48505 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99856 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.46912 * 180.02562 * 10 9 7 12 12 C 1.38289 * 119.95470 * 264.72305 * 11 10 9 13 13 C 1.38417 * 120.11160 * 179.76295 * 12 11 10 14 14 F 1.35094 * 119.98717 * 180.27922 * 13 12 11 15 15 C 1.38577 * 120.02263 * 0.51594 * 13 12 11 16 16 F 1.35099 * 120.04262 * 179.76187 * 15 13 12 17 17 C 1.38763 * 119.91173 * 359.74340 * 15 13 12 18 18 O 1.36011 * 120.05562 * 180.02562 * 17 15 13 19 19 C 1.38321 * 119.95823 * 85.00310 * 11 10 9 20 20 F 1.35105 * 120.01219 * 359.95505 * 19 11 10 21 21 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 23 23 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 24 24 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 25 25 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 26 26 H 1.08002 * 119.94666 * 0.02562 * 12 11 10 27 27 H 0.96699 * 113.99992 * 269.97791 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 6 1.4918 -4.9672 0.0020 12 6 1.2426 -5.6201 1.1953 13 6 0.5465 -6.8165 1.2000 14 9 0.2995 -7.4494 2.3677 15 6 0.1073 -7.3679 0.0069 16 9 -0.5679 -8.5380 0.0106 17 6 0.3616 -6.7163 -1.1915 18 8 -0.0686 -7.2545 -2.3642 19 6 1.0556 -5.5134 -1.1916 20 9 1.3041 -4.8766 -2.3570 21 1 -0.4850 0.8400 -0.0004 22 1 0.6241 -2.5575 -0.8880 23 1 0.6247 -2.5564 0.8919 24 1 2.8714 -3.6047 -0.8890 25 1 2.8726 -3.6039 0.8910 26 1 1.5878 -5.1936 2.1255 27 1 0.5692 -7.8500 -2.7810 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261000586.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:28 Heat of formation + Delta-G solvation = -166.932345 kcal Electronic energy + Delta-G solvation = -17305.925621 eV Core-core repulsion = 13807.191342 eV Total energy + Delta-G solvation = -3498.734279 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.50803 -48.77151 -48.58285 -39.38194 -37.20859 -33.94618 -31.98250 -29.65449 -28.88786 -25.32652 -23.23141 -22.54213 -20.68116 -18.65473 -18.13904 -18.04154 -16.91041 -16.49309 -16.34131 -15.63509 -15.40063 -15.01205 -14.62780 -14.52086 -14.32943 -14.05965 -13.22902 -13.11251 -12.64297 -12.38624 -11.79217 -11.69634 -11.15868 -10.96166 -10.82600 -10.65825 -10.03012 -9.77548 -9.24853 -8.80318 -8.42235 -8.39531 -6.06345 -4.10573 0.71549 0.76622 3.08011 3.30076 3.34626 3.35250 3.37054 3.97406 4.03794 4.39287 4.42509 4.66565 4.74738 5.29600 5.32282 5.55430 5.73623 5.81378 5.97947 6.35604 6.39542 6.52638 6.81610 7.29751 7.54806 7.64301 7.90251 8.28864 8.95123 9.54064 11.04690 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.034214 B = 0.005653 C = 0.005179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.177297 B = 4952.219485 C = 5404.908641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.526 4.526 8 H 0.057 0.943 9 C 0.028 3.972 10 C -0.081 4.081 11 C -0.056 4.056 12 C -0.107 4.107 13 C 0.075 3.925 14 F -0.125 7.125 15 C 0.049 3.951 16 F -0.121 7.121 17 C 0.066 3.934 18 O -0.472 6.472 19 C 0.097 3.903 20 F -0.112 7.112 21 H 0.263 0.737 22 H 0.021 0.979 23 H 0.021 0.979 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.160 0.840 27 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.041 -14.445 -0.276 14.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.564 4.564 8 H 0.076 0.924 9 C -0.009 4.009 10 C -0.118 4.118 11 C -0.058 4.058 12 C -0.126 4.126 13 C 0.054 3.946 14 F -0.103 7.103 15 C 0.028 3.972 16 F -0.099 7.099 17 C 0.019 3.981 18 O -0.281 6.281 19 C 0.077 3.923 20 F -0.091 7.091 21 H 0.072 0.928 22 H 0.039 0.961 23 H 0.039 0.961 24 H 0.091 0.909 25 H 0.093 0.907 26 H 0.177 0.823 27 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 2.343 -14.046 -0.181 14.241 hybrid contribution 0.548 0.369 -0.152 0.677 sum 2.891 -13.678 -0.333 13.984 Atomic orbital electron populations 1.69950 1.06102 1.26957 1.50092 1.25015 0.94850 0.99326 0.95074 0.86620 0.79558 0.82944 0.78662 1.20161 1.21247 1.20167 1.21121 0.93035 0.90638 1.51592 0.92430 1.19115 0.93567 0.90242 0.97936 1.20938 0.98653 0.89364 1.02829 1.20367 0.97619 0.97867 0.89911 1.20954 0.99105 0.92569 0.99963 1.17446 1.02830 0.94058 0.80232 1.91530 1.92577 1.81306 1.44928 1.17542 1.01601 0.85443 0.92614 1.91512 1.77441 1.43879 1.97106 1.17966 1.00853 0.93676 0.85603 1.84941 1.44832 1.65214 1.33151 1.17612 0.99893 0.91951 0.82840 1.91558 1.91844 1.80559 1.45103 0.92765 0.96090 0.96084 0.90888 0.90716 0.82286 0.74986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.39 13.29 55.43 0.74 -25.66 15 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 15 3 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 15 4 H -0.28 -6.42 7.11 56.52 0.40 -6.01 15 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 15 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 15 7 C -0.53 -14.29 9.11 -34.44 -0.31 -14.60 15 8 H 0.06 1.49 7.74 -52.49 -0.41 1.09 15 9 C 0.03 0.70 4.96 -27.88 -0.14 0.56 15 10 C -0.08 -1.52 5.05 -27.88 -0.14 -1.66 15 11 C -0.06 -0.92 5.14 -104.57 -0.54 -1.46 15 12 C -0.11 -1.53 9.65 -39.50 -0.38 -1.91 15 13 C 0.07 1.07 7.30 -39.39 -0.29 0.78 15 14 F -0.12 -1.78 17.18 2.25 0.04 -1.74 15 15 C 0.05 0.71 7.31 -39.26 -0.29 0.42 15 16 F -0.12 -1.76 17.02 2.25 0.04 -1.73 15 17 C 0.07 0.97 6.71 -39.15 -0.26 0.71 15 18 O -0.47 -6.17 13.23 -19.78 -0.26 -6.43 15 19 C 0.10 1.59 7.25 -39.32 -0.28 1.30 15 20 F -0.11 -2.00 16.40 2.25 0.04 -1.96 15 21 H 0.26 7.36 8.31 -40.82 -0.34 7.02 15 22 H 0.02 0.56 8.14 -51.93 -0.42 0.14 15 23 H 0.02 0.54 8.14 -51.93 -0.42 0.12 15 24 H 0.07 1.36 7.78 -51.93 -0.40 0.95 15 25 H 0.07 1.28 8.05 -51.93 -0.42 0.86 15 26 H 0.16 1.98 8.06 -52.49 -0.42 1.55 15 27 H 0.39 2.94 9.06 45.56 0.41 3.36 15 LS Contribution 261.22 15.07 3.94 3.94 Total: -1.00 -30.55 261.22 -4.45 -34.99 By element: Atomic # 1 Polarization: -2.02 SS G_CDS: -1.22 Total: -3.24 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: -2.73 Total: -14.29 kcal Atomic # 7 Polarization: -26.39 SS G_CDS: 0.74 Total: -25.66 kcal Atomic # 8 Polarization: -6.17 SS G_CDS: -0.26 Total: -6.43 kcal Atomic # 9 Polarization: -5.53 SS G_CDS: 0.11 Total: -5.42 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -30.55 -4.45 -34.99 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261000586.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.939 kcal (2) G-P(sol) polarization free energy of solvation -30.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds