Wall clock time and date at job start Mon Mar 30 2020 06:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46725 * 239.99880 * 3 2 1 5 5 H 1.48505 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99856 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.46912 * 180.02562 * 10 9 7 12 12 C 1.38289 * 119.95470 * 264.72305 * 11 10 9 13 13 C 1.38417 * 120.11160 * 179.76295 * 12 11 10 14 14 F 1.35094 * 119.98717 * 180.27922 * 13 12 11 15 15 C 1.38577 * 120.02263 * 0.51594 * 13 12 11 16 16 F 1.35099 * 120.04262 * 179.76187 * 15 13 12 17 17 C 1.38763 * 119.91173 * 359.74340 * 15 13 12 18 18 O 1.36011 * 120.05562 * 180.02562 * 17 15 13 19 19 C 1.38321 * 119.95823 * 85.00310 * 11 10 9 20 20 F 1.35105 * 120.01219 * 359.95505 * 19 11 10 21 21 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 23 23 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 24 24 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 25 25 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 26 26 H 1.08002 * 119.94666 * 0.02562 * 12 11 10 27 27 H 0.96699 * 113.99992 * 269.97791 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 6 1.4918 -4.9672 0.0020 12 6 1.2426 -5.6201 1.1953 13 6 0.5465 -6.8165 1.2000 14 9 0.2995 -7.4494 2.3677 15 6 0.1073 -7.3679 0.0069 16 9 -0.5679 -8.5380 0.0106 17 6 0.3616 -6.7163 -1.1915 18 8 -0.0686 -7.2545 -2.3642 19 6 1.0556 -5.5134 -1.1916 20 9 1.3041 -4.8766 -2.3570 21 1 -0.4850 0.8400 -0.0004 22 1 0.6241 -2.5575 -0.8880 23 1 0.6247 -2.5564 0.8919 24 1 2.8714 -3.6047 -0.8890 25 1 2.8726 -3.6039 0.8910 26 1 1.5878 -5.1936 2.1255 27 1 0.5692 -7.8500 -2.7810 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261000586.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:28 Heat of formation + Delta-G solvation = -186.287235 kcal Electronic energy + Delta-G solvation = -17306.764912 eV Core-core repulsion = 13807.191342 eV Total energy + Delta-G solvation = -3499.573570 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -50.66488 -50.09038 -49.73760 -40.55938 -38.36628 -35.75180 -33.73552 -30.83288 -30.48478 -27.07889 -24.43663 -24.11461 -22.24202 -19.82495 -19.33185 -19.24970 -18.49930 -18.06794 -17.58045 -16.87503 -16.68853 -16.47755 -16.17240 -15.78906 -15.52090 -15.29609 -14.83057 -14.55113 -14.23280 -13.92459 -13.44864 -13.09650 -12.79415 -12.53825 -12.39055 -12.10505 -11.78244 -11.59430 -11.25258 -10.54017 -9.98115 -9.68901 -8.18465 -6.30101 -0.45795 -0.42797 1.43456 1.45998 1.53677 1.88771 2.20201 2.43145 2.81394 2.91690 3.15719 3.23996 3.42546 3.55093 4.17808 4.29220 4.47311 4.61191 4.71875 4.77407 4.97570 5.08184 5.42111 5.50621 5.67577 5.83147 6.21016 6.44308 6.86548 7.39643 8.93082 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.034214 B = 0.005653 C = 0.005179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.177297 B = 4952.219485 C = 5404.908641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.964 3.036 4 H -0.268 1.268 5 H -0.287 1.287 6 H -0.263 1.263 7 C -0.542 4.542 8 H 0.069 0.931 9 C 0.032 3.968 10 C -0.067 4.067 11 C -0.068 4.068 12 C -0.096 4.096 13 C 0.081 3.919 14 F -0.122 7.122 15 C 0.051 3.949 16 F -0.120 7.120 17 C 0.079 3.921 18 O -0.480 6.480 19 C 0.081 3.919 20 F -0.126 7.126 21 H 0.263 0.737 22 H -0.014 1.014 23 H 0.000 1.000 24 H 0.072 0.928 25 H 0.095 0.905 26 H 0.180 0.820 27 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.108 -14.960 0.188 15.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.789 3.211 4 H -0.193 1.193 5 H -0.213 1.213 6 H -0.188 1.188 7 C -0.580 4.580 8 H 0.087 0.913 9 C -0.005 4.005 10 C -0.104 4.104 11 C -0.070 4.070 12 C -0.115 4.115 13 C 0.061 3.939 14 F -0.100 7.100 15 C 0.030 3.970 16 F -0.098 7.098 17 C 0.032 3.968 18 O -0.294 6.294 19 C 0.061 3.939 20 F -0.105 7.105 21 H 0.072 0.928 22 H 0.005 0.995 23 H 0.019 0.981 24 H 0.091 0.909 25 H 0.113 0.887 26 H 0.198 0.802 27 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges 3.439 -14.594 0.274 14.997 hybrid contribution 0.168 0.418 -0.322 0.554 sum 3.607 -14.176 -0.048 14.628 Atomic orbital electron populations 1.70096 1.07918 1.27854 1.51551 1.25969 0.95673 1.03392 0.94723 0.85510 0.78228 0.78082 0.79292 1.19280 1.21299 1.18768 1.21642 0.93843 0.91827 1.50665 0.91330 1.18957 0.94079 0.92277 0.95211 1.20635 0.97510 0.88442 1.03844 1.20138 0.98591 0.97395 0.90828 1.21064 0.98246 0.92199 0.99953 1.17396 1.02441 0.93875 0.80212 1.91544 1.92500 1.81209 1.44762 1.17569 1.01368 0.85392 0.92633 1.91520 1.77405 1.43788 1.97098 1.17818 0.99745 0.93031 0.86254 1.84879 1.46018 1.65827 1.32682 1.17800 1.00937 0.92713 0.82434 1.91518 1.92121 1.80995 1.45849 0.92823 0.99543 0.98136 0.90917 0.88677 0.80232 0.72030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.26 13.29 21.45 0.28 -55.98 15 2 C 0.00 0.02 5.46 84.66 0.46 0.48 15 3 Si 0.96 43.13 29.54 68.60 2.03 45.16 15 4 H -0.27 -11.54 7.11 99.48 0.71 -10.83 15 5 H -0.29 -12.76 7.11 99.48 0.71 -12.06 15 6 H -0.26 -11.13 7.11 99.48 0.71 -10.42 15 7 C -0.54 -29.48 9.11 25.60 0.23 -29.25 15 8 H 0.07 3.49 7.74 -2.91 -0.02 3.46 15 9 C 0.03 1.60 4.96 29.85 0.15 1.75 15 10 C -0.07 -2.49 5.05 29.85 0.15 -2.34 15 11 C -0.07 -2.17 5.14 -19.83 -0.10 -2.27 15 12 C -0.10 -2.57 9.65 22.32 0.22 -2.35 15 13 C 0.08 2.15 7.30 22.39 0.16 2.32 15 14 F -0.12 -3.18 17.18 44.97 0.77 -2.41 15 15 C 0.05 1.39 7.31 22.48 0.16 1.56 15 16 F -0.12 -3.24 17.02 44.97 0.77 -2.48 15 17 C 0.08 2.21 6.71 22.55 0.15 2.36 15 18 O -0.48 -11.77 13.23 -93.68 -1.24 -13.01 15 19 C 0.08 2.60 7.25 22.44 0.16 2.77 15 20 F -0.13 -4.51 16.40 44.97 0.74 -3.78 15 21 H 0.26 14.98 8.31 -92.71 -0.77 14.21 15 22 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 15 23 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 15 24 H 0.07 2.67 7.78 -2.39 -0.02 2.65 15 25 H 0.09 3.09 8.05 -2.39 -0.02 3.07 15 26 H 0.18 4.00 8.06 -2.91 -0.02 3.98 15 27 H 0.42 5.39 9.06 -74.06 -0.67 4.72 15 Total: -1.00 -65.14 261.22 5.65 -59.49 By element: Atomic # 1 Polarization: -2.57 SS G_CDS: 0.56 Total: -2.02 kcal Atomic # 6 Polarization: -26.73 SS G_CDS: 1.75 Total: -24.98 kcal Atomic # 7 Polarization: -56.26 SS G_CDS: 0.28 Total: -55.98 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: -1.24 Total: -13.01 kcal Atomic # 9 Polarization: -10.94 SS G_CDS: 2.28 Total: -8.66 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -65.14 5.65 -59.49 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261000586.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.801 kcal (2) G-P(sol) polarization free energy of solvation -65.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds