Wall clock time and date at job start Mon Mar 30 2020 05:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.47123 * 2 1 4 4 C 1.50697 * 109.47201 * 120.00129 * 2 1 3 5 5 H 1.07997 * 120.00679 * 120.00124 * 4 2 1 6 6 C 1.37887 * 119.99546 * 300.00055 * 4 2 1 7 7 N 1.31514 * 119.99392 * 180.02562 * 6 4 2 8 8 Si 1.86789 * 120.00082 * 359.97438 * 6 4 2 9 9 H 1.48500 * 109.47190 * 90.00180 * 8 6 4 10 10 H 1.48510 * 109.47103 * 210.00063 * 8 6 4 11 11 H 1.48503 * 109.47486 * 329.99768 * 8 6 4 12 12 C 1.50698 * 109.47349 * 240.00223 * 2 1 3 13 13 C 1.38220 * 119.96818 * 120.00275 * 12 2 1 14 14 C 1.38445 * 120.03572 * 180.02562 * 13 12 2 15 15 F 1.35102 * 120.01795 * 179.97438 * 14 13 12 16 16 C 1.38515 * 119.96604 * 359.97438 * 14 13 12 17 17 Cl 1.73598 * 120.03578 * 179.72800 * 16 14 13 18 18 C 1.38518 * 119.92987 * 359.97438 * 16 14 13 19 19 F 1.35102 * 120.01646 * 179.97438 * 18 16 14 20 20 C 1.38222 * 119.96041 * 300.02273 * 12 2 1 21 21 H 1.08996 * 109.46910 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47476 * 300.00273 * 1 2 3 23 23 H 1.09005 * 109.46992 * 59.99793 * 1 2 3 24 24 H 0.97006 * 119.99293 * 180.02562 * 7 6 4 25 25 H 1.08002 * 119.97994 * 359.97438 * 13 12 2 26 26 H 1.07998 * 119.98205 * 0.02562 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 2.1380 -0.8590 3.5565 8 14 0.6258 1.2798 2.6540 9 1 -0.8021 0.8745 2.6992 10 1 0.9771 1.9954 3.9070 11 1 0.8491 2.1774 1.4922 12 6 2.0324 -0.7103 -1.2305 13 6 2.8270 -0.0379 -2.1398 14 6 3.2889 -0.6890 -3.2709 15 9 4.0652 -0.0313 -4.1598 16 6 2.9547 -2.0151 -3.4909 17 17 3.5270 -2.8312 -4.9122 18 6 2.1591 -2.6879 -2.5782 19 9 1.8316 -3.9812 -2.7912 20 6 1.6976 -2.0335 -1.4487 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 1.9033 -0.5278 4.4375 25 1 3.0871 0.9962 -1.9682 26 1 1.0760 -2.5573 -0.7376 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261047117.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:09 Heat of formation + Delta-G solvation = -77.433100 kcal Electronic energy + Delta-G solvation = -15348.808266 eV Core-core repulsion = 12282.291341 eV Total energy + Delta-G solvation = -3066.516925 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.032 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.87917 -48.79688 -38.96900 -36.61443 -34.50317 -31.83141 -30.16877 -29.07293 -25.26593 -23.43932 -22.78034 -20.26553 -17.51877 -17.39178 -16.59315 -16.36658 -15.95117 -15.39580 -15.15168 -14.96219 -14.30467 -13.60049 -13.14737 -12.61385 -12.54507 -12.36023 -12.12991 -12.09321 -11.76049 -11.17068 -10.88258 -10.79669 -10.44631 -10.22429 -9.60607 -9.35518 -8.74225 -8.56272 -8.32687 -6.23722 -4.26691 1.11430 1.17172 2.03457 3.15945 3.25685 3.29485 3.58587 3.89387 4.25285 4.53227 4.84768 4.99628 5.09010 5.47924 5.76475 5.85660 5.96680 6.07548 6.21913 6.38851 6.44283 6.59291 6.78328 6.94244 7.22118 7.48762 8.29115 8.78189 9.35006 10.88481 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.036850 B = 0.006656 C = 0.006164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.659010 B = 4205.614248 C = 4541.603313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.037 3.963 3 H 0.045 0.955 4 C -0.520 4.520 5 H 0.079 0.921 6 C 0.075 3.925 7 N -0.892 5.892 8 Si 0.888 3.112 9 H -0.277 1.277 10 H -0.296 1.296 11 H -0.265 1.265 12 C 0.036 3.964 13 C -0.161 4.161 14 C 0.134 3.866 15 F -0.127 7.127 16 C -0.137 4.137 17 Cl -0.051 7.051 18 C 0.134 3.866 19 F -0.126 7.126 20 C -0.138 4.138 21 H 0.057 0.943 22 H 0.047 0.953 23 H 0.034 0.966 24 H 0.267 0.733 25 H 0.147 0.853 26 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.849 0.183 -12.275 12.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.018 3.982 3 H 0.063 0.937 4 C -0.557 4.557 5 H 0.097 0.903 6 C -0.128 4.128 7 N -0.528 5.528 8 Si 0.718 3.282 9 H -0.204 1.204 10 H -0.223 1.223 11 H -0.190 1.190 12 C 0.035 3.965 13 C -0.180 4.180 14 C 0.114 3.886 15 F -0.106 7.106 16 C -0.165 4.165 17 Cl -0.022 7.022 18 C 0.114 3.886 19 F -0.104 7.104 20 C -0.157 4.157 21 H 0.076 0.924 22 H 0.065 0.935 23 H 0.053 0.947 24 H 0.077 0.923 25 H 0.165 0.835 26 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -0.767 0.072 -12.243 12.267 hybrid contribution -0.355 0.512 -0.069 0.627 sum -1.122 0.584 -12.312 12.377 Atomic orbital electron populations 1.22202 0.97570 1.01431 0.99276 1.18464 0.92532 0.96530 0.90648 0.93657 1.20853 1.33105 1.14011 0.87751 0.90266 1.24973 0.95510 0.96611 0.95674 1.69876 1.44776 1.40106 0.98077 0.86850 0.80604 0.83569 0.77221 1.20379 1.22307 1.19008 1.20083 0.90111 0.92309 0.93978 1.21199 1.01632 1.02019 0.93160 1.17042 0.93997 0.88287 0.89294 1.91517 1.72090 1.80282 1.66676 1.20758 1.08038 0.93597 0.94146 1.98354 1.87965 1.78614 1.37249 1.17139 0.97519 0.79248 0.94711 1.91524 1.90670 1.33530 1.94688 1.21212 1.03033 0.95573 0.95907 0.92364 0.93481 0.94664 0.92301 0.83499 0.82699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 8.49 37.16 0.32 -2.50 15 2 C 0.04 0.77 2.07 -92.93 -0.19 0.58 15 3 H 0.05 0.94 6.93 -51.92 -0.36 0.58 15 4 C -0.52 -13.20 8.82 -34.44 -0.30 -13.51 15 5 H 0.08 2.21 7.84 -52.49 -0.41 1.80 15 6 C 0.08 2.01 5.45 -17.82 -0.10 1.91 15 7 N -0.89 -25.64 13.96 55.43 0.77 -24.87 15 8 Si 0.89 20.20 24.37 -169.99 -4.14 16.06 15 9 H -0.28 -6.14 6.87 56.52 0.39 -5.75 15 10 H -0.30 -6.86 7.11 56.52 0.40 -6.45 15 11 H -0.27 -5.67 6.53 56.52 0.37 -5.30 15 12 C 0.04 0.65 4.74 -104.63 -0.50 0.16 15 13 C -0.16 -2.63 9.65 -39.51 -0.38 -3.01 15 14 C 0.13 2.14 7.27 -39.40 -0.29 1.85 15 15 F -0.13 -1.96 16.84 2.25 0.04 -1.93 15 16 C -0.14 -2.21 6.33 -39.38 -0.25 -2.46 15 17 Cl -0.05 -0.74 28.28 -51.86 -1.47 -2.21 15 18 C 0.13 2.23 7.27 -39.40 -0.29 1.94 15 19 F -0.13 -2.06 16.84 2.25 0.04 -2.02 15 20 C -0.14 -2.42 8.69 -39.51 -0.34 -2.76 15 21 H 0.06 1.06 7.38 -51.93 -0.38 0.68 15 22 H 0.05 0.95 3.27 -51.93 -0.17 0.78 15 23 H 0.03 0.57 8.14 -51.93 -0.42 0.15 15 24 H 0.27 7.22 8.31 -40.82 -0.34 6.88 15 25 H 0.15 2.13 7.94 -52.49 -0.42 1.72 15 26 H 0.16 2.70 7.57 -52.49 -0.40 2.31 15 LS Contribution 246.96 15.07 3.72 3.72 Total: -1.00 -26.57 246.96 -5.10 -31.67 By element: Atomic # 1 Polarization: -0.88 SS G_CDS: -1.74 Total: -2.63 kcal Atomic # 6 Polarization: -15.48 SS G_CDS: -2.32 Total: -17.80 kcal Atomic # 7 Polarization: -25.64 SS G_CDS: 0.77 Total: -24.87 kcal Atomic # 9 Polarization: -4.02 SS G_CDS: 0.08 Total: -3.94 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -4.14 Total: 16.06 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.47 Total: -2.21 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -26.57 -5.10 -31.67 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261047117.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.759 kcal (2) G-P(sol) polarization free energy of solvation -26.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds