Wall clock time and date at job start Mon Mar 30 2020 05:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.47123 * 2 1 4 4 C 1.50697 * 109.47201 * 120.00129 * 2 1 3 5 5 H 1.07997 * 120.00679 * 120.00124 * 4 2 1 6 6 C 1.37887 * 119.99546 * 300.00055 * 4 2 1 7 7 N 1.31514 * 119.99392 * 180.02562 * 6 4 2 8 8 Si 1.86789 * 120.00082 * 359.97438 * 6 4 2 9 9 H 1.48500 * 109.47190 * 90.00180 * 8 6 4 10 10 H 1.48510 * 109.47103 * 210.00063 * 8 6 4 11 11 H 1.48503 * 109.47486 * 329.99768 * 8 6 4 12 12 C 1.50698 * 109.47349 * 240.00223 * 2 1 3 13 13 C 1.38220 * 119.96818 * 120.00275 * 12 2 1 14 14 C 1.38445 * 120.03572 * 180.02562 * 13 12 2 15 15 F 1.35102 * 120.01795 * 179.97438 * 14 13 12 16 16 C 1.38515 * 119.96604 * 359.97438 * 14 13 12 17 17 Cl 1.73598 * 120.03578 * 179.72800 * 16 14 13 18 18 C 1.38518 * 119.92987 * 359.97438 * 16 14 13 19 19 F 1.35102 * 120.01646 * 179.97438 * 18 16 14 20 20 C 1.38222 * 119.96041 * 300.02273 * 12 2 1 21 21 H 1.08996 * 109.46910 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47476 * 300.00273 * 1 2 3 23 23 H 1.09005 * 109.46992 * 59.99793 * 1 2 3 24 24 H 0.97006 * 119.99293 * 180.02562 * 7 6 4 25 25 H 1.08002 * 119.97994 * 359.97438 * 13 12 2 26 26 H 1.07998 * 119.98205 * 0.02562 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 2.1380 -0.8590 3.5565 8 14 0.6258 1.2798 2.6540 9 1 -0.8021 0.8745 2.6992 10 1 0.9771 1.9954 3.9070 11 1 0.8491 2.1774 1.4922 12 6 2.0324 -0.7103 -1.2305 13 6 2.8270 -0.0379 -2.1398 14 6 3.2889 -0.6890 -3.2709 15 9 4.0652 -0.0313 -4.1598 16 6 2.9547 -2.0151 -3.4909 17 17 3.5270 -2.8312 -4.9122 18 6 2.1591 -2.6879 -2.5782 19 9 1.8316 -3.9812 -2.7912 20 6 1.6976 -2.0335 -1.4487 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 1.9033 -0.5278 4.4375 25 1 3.0871 0.9962 -1.9682 26 1 1.0760 -2.5573 -0.7376 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261047117.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:08 Heat of formation + Delta-G solvation = -91.347860 kcal Electronic energy + Delta-G solvation = -15349.411655 eV Core-core repulsion = 12282.291341 eV Total energy + Delta-G solvation = -3067.120314 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.032 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -50.15129 -50.09603 -40.34185 -37.87839 -36.13776 -33.69504 -31.49374 -30.51520 -27.08377 -24.94027 -24.10816 -21.81373 -19.00890 -18.89114 -18.15251 -17.70581 -17.25249 -16.77048 -16.71446 -16.43481 -15.59179 -15.18889 -14.86289 -14.15805 -13.97491 -13.76082 -13.59969 -13.40604 -13.27235 -12.82706 -12.23793 -12.13489 -12.10558 -11.87771 -11.30882 -11.16884 -10.72293 -9.87371 -9.70257 -8.26872 -6.33147 -0.23026 -0.14460 0.76953 1.37892 1.43128 1.52921 2.23015 2.36051 2.58589 3.08195 3.22761 3.54541 3.60209 4.15242 4.40679 4.51544 4.55034 4.61255 4.76826 4.91042 5.00846 5.11368 5.30205 5.55735 5.62425 5.71004 6.27846 6.73819 7.32133 8.89098 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.036850 B = 0.006656 C = 0.006164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.659010 B = 4205.614248 C = 4541.603313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.037 3.963 3 H 0.054 0.946 4 C -0.514 4.514 5 H 0.038 0.962 6 C 0.016 3.984 7 N -0.947 5.947 8 Si 0.947 3.053 9 H -0.267 1.267 10 H -0.306 1.306 11 H -0.237 1.237 12 C 0.019 3.981 13 C -0.151 4.151 14 C 0.138 3.862 15 F -0.121 7.121 16 C -0.136 4.136 17 Cl -0.036 7.036 18 C 0.132 3.868 19 F -0.125 7.125 20 C -0.142 4.142 21 H 0.057 0.943 22 H 0.038 0.962 23 H 0.069 0.931 24 H 0.266 0.734 25 H 0.168 0.832 26 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.467 1.562 -14.114 14.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.018 3.982 3 H 0.072 0.928 4 C -0.552 4.552 5 H 0.057 0.943 6 C -0.181 4.181 7 N -0.587 5.587 8 Si 0.774 3.226 9 H -0.193 1.193 10 H -0.234 1.234 11 H -0.160 1.160 12 C 0.019 3.981 13 C -0.170 4.170 14 C 0.118 3.882 15 F -0.099 7.099 16 C -0.164 4.164 17 Cl -0.007 7.007 18 C 0.112 3.888 19 F -0.104 7.104 20 C -0.161 4.161 21 H 0.076 0.924 22 H 0.056 0.944 23 H 0.087 0.913 24 H 0.075 0.925 25 H 0.186 0.814 26 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -1.388 1.451 -14.125 14.267 hybrid contribution -0.074 -0.029 0.401 0.408 sum -1.462 1.422 -13.724 13.875 Atomic orbital electron populations 1.22146 0.95929 1.01958 1.00405 1.18372 0.93900 0.96425 0.89467 0.92761 1.21114 1.31513 1.12687 0.89892 0.94335 1.25829 0.97118 0.99874 0.95303 1.70039 1.47375 1.42523 0.98727 0.85879 0.79057 0.80080 0.77581 1.19293 1.23393 1.15991 1.19867 0.91696 0.92599 0.93976 1.21319 1.00298 1.02868 0.92488 1.16969 0.93868 0.88141 0.89263 1.91538 1.71858 1.80120 1.66414 1.20858 1.07339 0.93815 0.94411 1.98363 1.87694 1.78368 1.36243 1.17055 0.97777 0.79298 0.94654 1.91525 1.90701 1.33472 1.94659 1.21157 1.03201 0.95620 0.96154 0.92373 0.94394 0.91258 0.92504 0.81403 0.83460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.22 8.49 71.98 0.61 -4.61 15 2 C 0.04 1.47 2.07 -12.29 -0.03 1.45 15 3 H 0.05 2.08 6.93 -2.38 -0.02 2.06 15 4 C -0.51 -26.36 8.82 25.60 0.23 -26.14 15 5 H 0.04 2.23 7.84 -2.91 -0.02 2.21 15 6 C 0.02 0.88 5.45 84.66 0.46 1.34 15 7 N -0.95 -56.16 13.96 21.45 0.30 -55.86 15 8 Si 0.95 40.88 24.37 68.60 1.67 42.55 15 9 H -0.27 -10.99 6.87 99.48 0.68 -10.31 15 10 H -0.31 -13.59 7.11 99.48 0.71 -12.88 15 11 H -0.24 -9.03 6.53 99.48 0.65 -8.38 15 12 C 0.02 0.67 4.74 -19.87 -0.09 0.57 15 13 C -0.15 -4.53 9.65 22.31 0.22 -4.31 15 14 C 0.14 4.05 7.27 22.39 0.16 4.21 15 15 F -0.12 -3.38 16.84 44.97 0.76 -2.62 15 16 C -0.14 -4.10 6.33 22.40 0.14 -3.96 15 17 Cl -0.04 -0.97 28.28 -2.72 -0.08 -1.04 15 18 C 0.13 4.23 7.27 22.39 0.16 4.39 15 19 F -0.13 -3.95 16.84 44.97 0.76 -3.20 15 20 C -0.14 -4.87 8.69 22.32 0.19 -4.67 15 21 H 0.06 2.02 7.38 -2.39 -0.02 2.01 15 22 H 0.04 1.41 3.27 -2.39 -0.01 1.40 15 23 H 0.07 1.98 8.14 -2.38 -0.02 1.96 15 24 H 0.27 14.87 8.31 -92.70 -0.77 14.10 15 25 H 0.17 4.28 7.94 -2.91 -0.02 4.25 15 26 H 0.15 5.18 7.57 -2.91 -0.02 5.16 15 Total: -1.00 -56.92 246.96 6.60 -50.32 By element: Atomic # 1 Polarization: 0.43 SS G_CDS: 1.14 Total: 1.57 kcal Atomic # 6 Polarization: -33.78 SS G_CDS: 2.05 Total: -31.72 kcal Atomic # 7 Polarization: -56.16 SS G_CDS: 0.30 Total: -55.86 kcal Atomic # 9 Polarization: -7.33 SS G_CDS: 1.51 Total: -5.82 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 1.67 Total: 42.55 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -0.08 Total: -1.04 kcal Total: -56.92 6.60 -50.32 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261047117.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.030 kcal (2) G-P(sol) polarization free energy of solvation -56.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds