Wall clock time and date at job start Mon Mar 30 2020 06:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38153 * 119.76769 * 2 1 4 4 C 1.38180 * 120.36174 * 180.26106 * 3 2 1 5 5 C 1.39014 * 119.99715 * 359.48600 * 4 3 2 6 6 C 1.47928 * 133.98127 * 180.22992 * 5 4 3 7 7 C 1.40949 * 127.32929 * 0.02775 * 6 5 4 8 8 H 1.07994 * 119.99570 * 359.97438 * 7 6 5 9 9 C 1.39805 * 119.99716 * 180.02562 * 7 6 5 10 10 N 1.30982 * 120.00413 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99339 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47457 * 59.99868 * 11 9 7 13 13 H 1.48501 * 109.46657 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.47185 * 299.99191 * 11 9 7 15 15 C 1.38632 * 105.34158 * 180.02562 * 6 5 4 16 16 O 1.33985 * 109.28927 * 0.02562 * 15 6 5 17 17 C 1.34710 * 111.59668 * 0.02562 * 16 15 6 18 18 C 1.39501 * 119.76154 * 179.74843 * 2 1 3 19 19 C 1.47438 * 120.16732 * 359.97334 * 18 2 1 20 20 O 1.21506 * 120.00444 * 270.02405 * 19 18 2 21 21 O 1.34759 * 119.99753 * 90.02160 * 19 18 2 22 22 H 1.09004 * 109.46904 * 270.25482 * 1 2 3 23 23 H 1.08999 * 109.47105 * 30.25205 * 1 2 3 24 24 H 1.09003 * 109.47240 * 150.25372 * 1 2 3 25 25 H 1.07993 * 119.81762 * 359.97438 * 3 2 1 26 26 H 1.08002 * 120.00445 * 179.76996 * 4 3 2 27 27 H 0.96998 * 119.99927 * 180.02562 * 10 9 7 28 28 H 1.07999 * 125.36023 * 179.97438 * 15 6 5 29 29 H 0.96701 * 116.99697 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1929 1.1992 0.0000 4 6 3.5746 1.2136 -0.0054 5 6 4.2821 0.0169 -0.0001 6 6 5.7212 -0.3256 0.0009 7 6 6.8122 0.5668 -0.0032 8 1 6.6379 1.6326 -0.0080 9 6 8.1198 0.0721 -0.0020 10 7 8.3311 -1.2205 0.0033 11 14 9.5657 1.2549 -0.0082 12 1 9.5065 2.1154 1.2007 13 1 10.8352 0.4846 -0.0052 14 1 9.5048 2.1049 -1.2243 15 6 5.7684 -1.7111 0.0067 16 8 4.5196 -2.1966 0.0086 17 6 3.6037 -1.2088 0.0037 18 6 2.1995 -1.2110 0.0053 19 6 1.4607 -2.4869 0.0115 20 8 1.1563 -3.0077 1.0663 21 8 1.1230 -3.0756 -1.1527 22 1 -0.3633 0.0046 1.0277 23 1 -0.3633 0.8877 -0.5177 24 1 -0.3634 -0.8923 -0.5099 25 1 1.6462 2.1305 -0.0004 26 1 4.1050 2.1544 -0.0092 27 1 9.2384 -1.5636 0.0045 28 1 6.6700 -2.3057 0.0086 29 1 0.6388 -3.9108 -1.0980 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261051572.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:04 Heat of formation + Delta-G solvation = -82.681728 kcal Electronic energy + Delta-G solvation = -17120.238303 eV Core-core repulsion = 14167.014146 eV Total energy + Delta-G solvation = -2953.224157 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.072 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.01576 -39.67079 -37.21356 -35.71687 -34.17990 -32.23717 -30.17203 -29.65560 -26.24135 -25.25699 -23.96037 -21.61948 -20.31253 -19.93275 -17.92493 -17.36682 -16.67271 -15.91246 -15.19049 -15.03697 -14.71985 -14.50903 -14.22956 -13.34199 -13.18695 -13.05547 -12.62937 -11.95320 -11.87448 -11.49611 -11.36568 -11.28752 -11.16718 -11.05300 -10.94321 -10.39903 -10.02266 -9.80377 -9.74223 -8.73002 -7.79453 -7.07886 -6.79372 -4.39847 1.51087 2.10606 2.43862 2.96458 3.04517 3.07317 3.39591 3.80548 3.87677 4.09507 4.30826 5.19730 5.25690 5.41686 5.49866 5.61272 5.75099 5.85341 5.96535 6.04170 6.19745 6.53241 6.64109 6.76773 6.90893 6.99848 7.11490 7.24590 7.57319 7.84020 8.15021 8.22907 8.49694 8.78672 8.94047 10.21121 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.036105 B = 0.006584 C = 0.005740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.318999 B = 4251.551727 C = 4877.018962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.036 4.036 3 C -0.175 4.175 4 C -0.034 4.034 5 C -0.142 4.142 6 C 0.007 3.993 7 C -0.415 4.415 8 H 0.077 0.923 9 C 0.056 3.944 10 N -0.822 5.822 11 Si 0.927 3.073 12 H -0.267 1.267 13 H -0.278 1.278 14 H -0.266 1.266 15 C -0.166 4.166 16 O -0.201 6.201 17 C 0.084 3.916 18 C -0.130 4.130 19 C 0.548 3.452 20 O -0.512 6.512 21 O -0.510 6.510 22 H 0.072 0.928 23 H 0.073 0.927 24 H 0.059 0.941 25 H 0.124 0.876 26 H 0.123 0.877 27 H 0.283 0.717 28 H 0.229 0.771 29 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.531 2.037 -1.930 8.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.036 4.036 3 C -0.193 4.193 4 C -0.053 4.053 5 C -0.143 4.143 6 C 0.005 3.995 7 C -0.445 4.445 8 H 0.095 0.905 9 C -0.156 4.156 10 N -0.451 5.451 11 Si 0.752 3.248 12 H -0.191 1.191 13 H -0.203 1.203 14 H -0.191 1.191 15 C -0.231 4.231 16 O -0.102 6.102 17 C 0.033 3.967 18 C -0.132 4.132 19 C 0.391 3.609 20 O -0.400 6.400 21 O -0.320 6.320 22 H 0.091 0.909 23 H 0.092 0.908 24 H 0.078 0.922 25 H 0.142 0.858 26 H 0.141 0.859 27 H 0.094 0.906 28 H 0.244 0.756 29 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -8.228 1.841 -1.660 8.593 hybrid contribution 0.573 -0.002 0.052 0.576 sum -7.654 1.838 -1.608 8.034 Atomic orbital electron populations 1.20792 0.91054 1.02589 1.02396 1.19261 0.95010 0.90685 0.98686 1.20474 0.93683 0.96376 1.08774 1.20600 0.93021 0.96972 0.94670 1.20154 0.95325 0.92384 1.06477 1.18762 0.88181 0.92697 0.99902 1.18727 0.89057 0.93869 1.42888 0.90451 1.25759 1.00430 0.95758 0.93655 1.69245 1.23348 1.13239 1.39291 0.86035 0.78960 0.80104 0.79676 1.19130 1.20338 1.19118 1.25653 0.81472 0.94871 1.21070 1.83685 1.16325 1.34547 1.75652 1.19198 0.88783 0.88235 1.00489 1.17364 0.88168 0.90159 1.17473 1.21031 0.74760 0.84280 0.80850 1.90860 1.51879 1.64434 1.32852 1.84778 1.70655 1.40719 1.35893 0.90946 0.90848 0.92196 0.85840 0.85914 0.90620 0.75568 0.73928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.50 9.60 36.01 0.35 -1.16 15 2 C -0.04 -0.64 5.91 -104.18 -0.62 -1.26 15 3 C -0.17 -3.00 9.66 -39.63 -0.38 -3.39 15 4 C -0.03 -0.69 10.08 -39.32 -0.40 -1.09 15 5 C -0.14 -3.44 6.35 -104.94 -0.67 -4.11 15 6 C 0.01 0.19 6.13 -104.76 -0.64 -0.45 15 7 C -0.41 -10.80 9.44 -37.97 -0.36 -11.16 15 8 H 0.08 1.89 7.84 -52.49 -0.41 1.48 15 9 C 0.06 1.39 5.49 -17.33 -0.10 1.29 15 10 N -0.82 -20.76 10.38 55.54 0.58 -20.19 15 11 Si 0.93 18.56 29.56 -169.99 -5.02 13.54 15 12 H -0.27 -5.28 7.11 56.52 0.40 -4.88 15 13 H -0.28 -5.45 7.11 56.52 0.40 -5.05 15 14 H -0.27 -5.26 7.11 56.52 0.40 -4.86 15 15 C -0.17 -4.45 11.08 30.88 0.34 -4.11 15 16 O -0.20 -5.26 10.51 5.43 0.06 -5.20 15 17 C 0.08 2.05 7.11 -38.06 -0.27 1.78 15 18 C -0.13 -2.73 5.76 -104.86 -0.60 -3.33 15 19 C 0.55 10.60 6.18 34.48 0.21 10.81 15 20 O -0.51 -10.83 17.89 -19.27 -0.34 -11.17 15 21 O -0.51 -7.92 13.44 -40.65 -0.55 -8.46 15 22 H 0.07 0.92 8.14 -51.93 -0.42 0.49 15 23 H 0.07 0.80 8.08 -51.93 -0.42 0.38 15 24 H 0.06 0.79 7.05 -51.93 -0.37 0.42 15 25 H 0.12 1.66 8.06 -52.49 -0.42 1.23 15 26 H 0.12 2.20 8.06 -52.49 -0.42 1.78 15 27 H 0.28 6.52 8.30 -40.82 -0.34 6.18 15 28 H 0.23 6.11 5.73 -52.49 -0.30 5.81 15 29 H 0.40 3.95 9.11 45.56 0.42 4.36 15 LS Contribution 266.27 15.07 4.01 4.01 Total: -1.00 -30.39 266.27 -5.89 -36.27 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -1.49 Total: 7.36 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: -3.13 Total: -16.16 kcal Atomic # 7 Polarization: -20.76 SS G_CDS: 0.58 Total: -20.19 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: -0.83 Total: -24.83 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.02 Total: 13.54 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -30.39 -5.89 -36.27 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261051572.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.407 kcal (2) G-P(sol) polarization free energy of solvation -30.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds