Wall clock time and date at job start Mon Mar 30 2020 06:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38153 * 119.76769 * 2 1 4 4 C 1.38180 * 120.36174 * 180.26106 * 3 2 1 5 5 C 1.39014 * 119.99715 * 359.48600 * 4 3 2 6 6 C 1.47928 * 133.98127 * 180.22992 * 5 4 3 7 7 C 1.40949 * 127.32929 * 0.02775 * 6 5 4 8 8 H 1.07994 * 119.99570 * 359.97438 * 7 6 5 9 9 C 1.39805 * 119.99716 * 180.02562 * 7 6 5 10 10 N 1.30982 * 120.00413 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99339 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47457 * 59.99868 * 11 9 7 13 13 H 1.48501 * 109.46657 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.47185 * 299.99191 * 11 9 7 15 15 C 1.38632 * 105.34158 * 180.02562 * 6 5 4 16 16 O 1.33985 * 109.28927 * 0.02562 * 15 6 5 17 17 C 1.34710 * 111.59668 * 0.02562 * 16 15 6 18 18 C 1.39501 * 119.76154 * 179.74843 * 2 1 3 19 19 C 1.47438 * 120.16732 * 359.97334 * 18 2 1 20 20 O 1.21506 * 120.00444 * 270.02405 * 19 18 2 21 21 O 1.34759 * 119.99753 * 90.02160 * 19 18 2 22 22 H 1.09004 * 109.46904 * 270.25482 * 1 2 3 23 23 H 1.08999 * 109.47105 * 30.25205 * 1 2 3 24 24 H 1.09003 * 109.47240 * 150.25372 * 1 2 3 25 25 H 1.07993 * 119.81762 * 359.97438 * 3 2 1 26 26 H 1.08002 * 120.00445 * 179.76996 * 4 3 2 27 27 H 0.96998 * 119.99927 * 180.02562 * 10 9 7 28 28 H 1.07999 * 125.36023 * 179.97438 * 15 6 5 29 29 H 0.96701 * 116.99697 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1929 1.1992 0.0000 4 6 3.5746 1.2136 -0.0054 5 6 4.2821 0.0169 -0.0001 6 6 5.7212 -0.3256 0.0009 7 6 6.8122 0.5668 -0.0032 8 1 6.6379 1.6326 -0.0080 9 6 8.1198 0.0721 -0.0020 10 7 8.3311 -1.2205 0.0033 11 14 9.5657 1.2549 -0.0082 12 1 9.5065 2.1154 1.2007 13 1 10.8352 0.4846 -0.0052 14 1 9.5048 2.1049 -1.2243 15 6 5.7684 -1.7111 0.0067 16 8 4.5196 -2.1966 0.0086 17 6 3.6037 -1.2088 0.0037 18 6 2.1995 -1.2110 0.0053 19 6 1.4607 -2.4869 0.0115 20 8 1.1563 -3.0077 1.0663 21 8 1.1230 -3.0756 -1.1527 22 1 -0.3633 0.0046 1.0277 23 1 -0.3633 0.8877 -0.5177 24 1 -0.3634 -0.8923 -0.5099 25 1 1.6462 2.1305 -0.0004 26 1 4.1050 2.1544 -0.0092 27 1 9.2384 -1.5636 0.0045 28 1 6.6700 -2.3057 0.0086 29 1 0.6388 -3.9108 -1.0980 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261051572.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:04 Heat of formation + Delta-G solvation = -102.220691 kcal Electronic energy + Delta-G solvation = -17121.085576 eV Core-core repulsion = 14167.014146 eV Total energy + Delta-G solvation = -2954.071431 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.072 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.76211 -41.18635 -38.75906 -37.14009 -36.05597 -33.84049 -31.72825 -31.36917 -27.88288 -27.01816 -25.46230 -23.22084 -21.99533 -21.62486 -19.49046 -19.01403 -18.28551 -17.62942 -16.81084 -16.72328 -16.55786 -16.14114 -15.66926 -14.74584 -14.62635 -14.41772 -14.28034 -13.55888 -13.25429 -13.06123 -13.02355 -12.77109 -12.65100 -12.54405 -12.47273 -11.99565 -11.82260 -11.55675 -11.45803 -10.44877 -9.44295 -8.88971 -8.64033 -6.37795 -0.08244 0.50313 0.92448 1.34534 1.40670 1.53993 1.91147 2.07931 2.19515 2.38186 2.66622 3.34180 3.88138 3.94444 4.13953 4.24792 4.32449 4.44056 4.72700 4.78242 4.80673 5.02347 5.15597 5.30378 5.32806 5.38887 5.47483 5.55794 5.85297 5.97354 6.31885 6.57396 6.84683 6.85156 7.04019 8.37747 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.036105 B = 0.006584 C = 0.005740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.318999 B = 4251.551727 C = 4877.018962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.022 4.022 3 C -0.153 4.153 4 C -0.040 4.040 5 C -0.177 4.177 6 C -0.014 4.014 7 C -0.447 4.447 8 H 0.087 0.913 9 C 0.012 3.988 10 N -0.848 5.848 11 Si 1.004 2.996 12 H -0.259 1.259 13 H -0.271 1.271 14 H -0.258 1.258 15 C -0.209 4.209 16 O -0.225 6.225 17 C 0.058 3.942 18 C -0.156 4.156 19 C 0.555 3.445 20 O -0.537 6.537 21 O -0.500 6.500 22 H 0.086 0.914 23 H 0.111 0.889 24 H 0.062 0.938 25 H 0.178 0.822 26 H 0.143 0.857 27 H 0.290 0.710 28 H 0.215 0.785 29 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.319 4.482 -2.293 11.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.023 4.023 3 C -0.171 4.171 4 C -0.058 4.058 5 C -0.178 4.178 6 C -0.017 4.017 7 C -0.477 4.477 8 H 0.105 0.895 9 C -0.197 4.197 10 N -0.477 5.477 11 Si 0.824 3.176 12 H -0.184 1.184 13 H -0.195 1.195 14 H -0.182 1.182 15 C -0.274 4.274 16 O -0.128 6.128 17 C 0.008 3.992 18 C -0.158 4.158 19 C 0.399 3.601 20 O -0.428 6.428 21 O -0.314 6.314 22 H 0.105 0.895 23 H 0.129 0.871 24 H 0.081 0.919 25 H 0.195 0.805 26 H 0.160 0.840 27 H 0.101 0.899 28 H 0.231 0.769 29 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges -10.057 4.257 -2.045 11.111 hybrid contribution 0.913 -0.744 0.126 1.185 sum -9.144 3.513 -1.918 9.981 Atomic orbital electron populations 1.20951 0.87258 1.04647 1.03883 1.19997 0.97621 0.89610 0.95058 1.21081 0.92498 0.98301 1.05187 1.20982 0.94532 0.96197 0.94117 1.20414 0.94393 0.94190 1.08801 1.19222 0.90157 0.92925 0.99372 1.19117 0.89939 0.94318 1.44369 0.89518 1.26830 1.03041 0.97514 0.92358 1.69356 1.24382 1.15065 1.38918 0.84900 0.75033 0.77666 0.79999 1.18376 1.19503 1.18216 1.25421 0.81831 0.95361 1.24785 1.83587 1.16410 1.35536 1.77252 1.19770 0.90013 0.88072 1.01389 1.17868 0.87105 0.92545 1.18289 1.20758 0.74265 0.83896 0.81191 1.90847 1.53118 1.64960 1.33838 1.84703 1.70578 1.42195 1.33914 0.89518 0.87088 0.91912 0.80509 0.83971 0.89926 0.76897 0.70873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.45 9.60 71.24 0.68 -1.76 15 2 C -0.02 -0.73 5.91 -19.58 -0.12 -0.84 15 3 C -0.15 -4.63 9.66 22.24 0.21 -4.42 15 4 C -0.04 -1.55 10.08 22.44 0.23 -1.33 15 5 C -0.18 -8.80 6.35 -20.07 -0.13 -8.93 15 6 C -0.01 -0.80 6.13 -19.95 -0.12 -0.93 15 7 C -0.45 -24.07 9.44 23.31 0.22 -23.85 15 8 H 0.09 4.30 7.84 -2.91 -0.02 4.28 15 9 C 0.01 0.62 5.49 85.20 0.47 1.09 15 10 N -0.85 -44.69 10.38 21.81 0.23 -44.46 15 11 Si 1.00 37.99 29.56 68.60 2.03 40.02 15 12 H -0.26 -9.47 7.11 99.48 0.71 -8.76 15 13 H -0.27 -9.79 7.11 99.48 0.71 -9.08 15 14 H -0.26 -9.35 7.11 99.48 0.71 -8.65 15 15 C -0.21 -12.17 11.08 67.91 0.75 -11.41 15 16 O -0.23 -12.63 10.51 -3.47 -0.04 -12.66 15 17 C 0.06 2.91 7.11 23.25 0.17 3.07 15 18 C -0.16 -6.47 5.76 -20.02 -0.12 -6.59 15 19 C 0.56 21.07 6.18 70.25 0.43 21.50 15 20 O -0.54 -22.48 17.89 19.82 0.35 -22.13 15 21 O -0.50 -14.79 13.44 -56.69 -0.76 -15.55 15 22 H 0.09 1.77 8.14 -2.38 -0.02 1.75 15 23 H 0.11 1.67 8.08 -2.39 -0.02 1.65 15 24 H 0.06 1.39 7.05 -2.39 -0.02 1.37 15 25 H 0.18 3.52 8.06 -2.91 -0.02 3.50 15 26 H 0.14 4.81 8.06 -2.91 -0.02 4.78 15 27 H 0.29 13.80 8.30 -92.71 -0.77 13.03 15 28 H 0.22 12.59 5.73 -2.91 -0.02 12.57 15 29 H 0.43 7.54 9.11 -74.06 -0.67 6.87 15 Total: -1.00 -70.90 266.27 5.03 -65.87 By element: Atomic # 1 Polarization: 22.77 SS G_CDS: 0.53 Total: 23.31 kcal Atomic # 6 Polarization: -37.08 SS G_CDS: 2.68 Total: -34.40 kcal Atomic # 7 Polarization: -44.69 SS G_CDS: 0.23 Total: -44.46 kcal Atomic # 8 Polarization: -49.89 SS G_CDS: -0.44 Total: -50.34 kcal Atomic # 14 Polarization: 37.99 SS G_CDS: 2.03 Total: 40.02 kcal Total: -70.90 5.03 -65.87 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261051572.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.348 kcal (2) G-P(sol) polarization free energy of solvation -70.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds