Wall clock time and date at job start Mon Mar 30 2020 05:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47115 * 2 1 4 4 C 1.50701 * 109.47346 * 120.00015 * 2 1 3 5 5 H 1.08002 * 119.99475 * 86.58677 * 4 2 1 6 6 C 1.37870 * 120.00036 * 266.59150 * 4 2 1 7 7 N 1.31515 * 120.00017 * 177.87068 * 6 4 2 8 8 Si 1.86801 * 120.00132 * 357.87190 * 6 4 2 9 9 H 1.48503 * 109.47105 * 268.79610 * 8 6 4 10 10 H 1.48498 * 109.47099 * 28.79880 * 8 6 4 11 11 H 1.48505 * 109.47107 * 148.79691 * 8 6 4 12 12 C 1.50701 * 109.47014 * 240.00378 * 2 1 3 13 13 C 1.38230 * 119.99061 * 299.72528 * 12 2 1 14 14 C 1.38423 * 120.01997 * 179.77150 * 13 12 2 15 15 F 1.35109 * 119.99504 * 180.25068 * 14 13 12 16 16 C 1.38458 * 120.01329 * 0.50270 * 14 13 12 17 17 C 1.38266 * 119.98529 * 359.74964 * 16 14 13 18 18 Cl 1.73604 * 120.01046 * 180.02562 * 17 16 14 19 19 C 1.38387 * 119.99592 * 119.99793 * 12 2 1 20 20 F 1.35099 * 120.00949 * 359.95838 * 19 12 2 21 21 H 1.08995 * 109.47247 * 181.03838 * 1 2 3 22 22 H 1.09005 * 109.46630 * 301.04070 * 1 2 3 23 23 H 1.09004 * 109.46849 * 61.03626 * 1 2 3 24 24 H 0.96999 * 120.00223 * 179.97438 * 7 6 4 25 25 H 1.08003 * 119.98678 * 359.97438 * 13 12 2 26 26 H 1.08001 * 120.00489 * 179.77066 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.1599 -1.7828 1.2205 6 6 2.3291 0.0087 2.3687 7 7 2.7275 -0.6155 3.4556 8 14 2.1653 1.8695 2.3673 9 1 3.4607 2.4801 1.9745 10 1 1.1140 2.2730 1.3993 11 1 1.7909 2.3345 3.7271 12 6 2.0323 -0.7103 -1.2305 13 6 1.7029 -2.0354 -1.4463 14 6 2.1601 -2.6871 -2.5787 15 9 1.8336 -3.9807 -2.7917 16 6 2.9561 -2.0150 -3.4907 17 6 3.2901 -0.6911 -3.2727 18 17 4.2877 0.1524 -4.4160 19 6 2.8279 -0.0376 -2.1414 20 9 3.1536 1.2560 -1.9281 21 1 -0.3633 -1.0274 0.0186 22 1 -0.3633 0.5300 0.8806 23 1 -0.3633 0.4977 -0.8992 24 1 2.9367 -0.1096 4.2564 25 1 1.0860 -2.5613 -0.7327 26 1 3.3158 -2.5247 -4.3723 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261053845.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:13 Heat of formation + Delta-G solvation = -99.057067 kcal Electronic energy + Delta-G solvation = -15525.964997 eV Core-core repulsion = 12458.510387 eV Total energy + Delta-G solvation = -3067.454611 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.032 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -50.01208 -49.99678 -40.22325 -37.83392 -36.18483 -33.84336 -31.17354 -30.53716 -27.24154 -25.07851 -23.77661 -21.68040 -19.33027 -18.79679 -18.32828 -18.06415 -17.03498 -16.46777 -16.39385 -15.98492 -15.36877 -15.20526 -14.70361 -14.35871 -14.13100 -13.93789 -13.73475 -13.39777 -12.98468 -12.83263 -12.41654 -12.25234 -12.04100 -11.78544 -11.59250 -11.19417 -10.76405 -9.90514 -9.58175 -8.31880 -6.36673 -0.24545 -0.07633 0.78499 1.33342 1.37044 1.45459 2.20916 2.32461 2.99691 3.03582 3.11395 3.56659 3.81312 3.96293 4.17490 4.52895 4.62941 4.74255 4.88208 4.90594 4.96699 5.06133 5.31616 5.50777 5.61484 5.65032 6.23708 6.69269 7.28686 8.83732 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.023689 B = 0.008875 C = 0.007210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.724360 B = 3154.064435 C = 3882.510462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.034 3.966 3 H 0.043 0.957 4 C -0.508 4.508 5 H 0.048 0.952 6 C 0.022 3.978 7 N -0.941 5.941 8 Si 0.924 3.076 9 H -0.274 1.274 10 H -0.238 1.238 11 H -0.283 1.283 12 C -0.043 4.043 13 C -0.117 4.117 14 C 0.107 3.893 15 F -0.129 7.129 16 C -0.124 4.124 17 C -0.044 4.044 18 Cl -0.034 7.034 19 C 0.072 3.928 20 F -0.134 7.134 21 H 0.057 0.943 22 H 0.045 0.955 23 H 0.053 0.947 24 H 0.267 0.733 25 H 0.148 0.852 26 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.098 0.119 -15.192 15.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.015 3.985 3 H 0.061 0.939 4 C -0.546 4.546 5 H 0.066 0.934 6 C -0.177 4.177 7 N -0.581 5.581 8 Si 0.748 3.252 9 H -0.200 1.200 10 H -0.161 1.161 11 H -0.209 1.209 12 C -0.045 4.045 13 C -0.136 4.136 14 C 0.087 3.913 15 F -0.108 7.108 16 C -0.143 4.143 17 C -0.072 4.072 18 Cl -0.005 7.005 19 C 0.052 3.948 20 F -0.113 7.113 21 H 0.076 0.924 22 H 0.065 0.935 23 H 0.072 0.928 24 H 0.076 0.924 25 H 0.165 0.835 26 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -0.958 0.221 -15.111 15.143 hybrid contribution 0.312 0.750 0.634 1.031 sum -0.646 0.971 -14.477 14.524 Atomic orbital electron populations 1.21932 0.95058 1.01651 1.00295 1.18303 0.94954 0.95599 0.89605 0.93857 1.21084 1.43684 0.94589 0.95225 0.93378 1.25762 0.94130 1.02761 0.95014 1.70008 1.47132 1.37865 1.03080 0.86074 0.79964 0.81057 0.78126 1.20008 1.16128 1.20930 1.20107 0.95024 0.94431 0.94892 1.21023 1.01828 0.93799 0.96960 1.17364 0.99111 0.79342 0.95468 1.91523 1.90984 1.33537 1.94710 1.20907 0.99679 0.91956 1.01738 1.20570 1.00203 0.93994 0.92403 1.98374 1.67052 1.77220 1.57837 1.17468 1.01543 0.79986 0.95836 1.91467 1.91044 1.34006 1.94777 0.92353 0.93540 0.92826 0.92382 0.83471 0.80010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.99 8.90 71.98 0.64 -4.35 15 2 C 0.03 1.51 2.02 -12.29 -0.02 1.48 15 3 H 0.04 1.96 4.36 -2.39 -0.01 1.95 15 4 C -0.51 -27.15 8.64 25.60 0.22 -26.93 15 5 H 0.05 2.80 7.62 -2.91 -0.02 2.78 15 6 C 0.02 1.20 5.47 84.65 0.46 1.67 15 7 N -0.94 -56.82 13.96 21.44 0.30 -56.52 15 8 Si 0.92 42.83 26.75 68.60 1.83 44.66 15 9 H -0.27 -12.68 7.11 99.48 0.71 -11.97 15 10 H -0.24 -10.10 6.43 99.48 0.64 -9.46 15 11 H -0.28 -12.93 7.11 99.48 0.71 -12.23 15 12 C -0.04 -1.66 4.78 -19.83 -0.09 -1.75 15 13 C -0.12 -4.02 8.58 22.31 0.19 -3.83 15 14 C 0.11 3.10 7.30 22.37 0.16 3.27 15 15 F -0.13 -3.57 17.27 44.97 0.78 -2.79 15 16 C -0.12 -3.16 9.81 22.33 0.22 -2.94 15 17 C -0.04 -1.29 6.32 22.36 0.14 -1.15 15 18 Cl -0.03 -0.86 28.62 -2.72 -0.08 -0.94 15 19 C 0.07 2.57 7.22 22.39 0.16 2.74 15 20 F -0.13 -5.11 15.76 44.97 0.71 -4.40 15 21 H 0.06 2.09 7.44 -2.39 -0.02 2.07 15 22 H 0.05 1.80 7.60 -2.38 -0.02 1.78 15 23 H 0.05 1.73 8.14 -2.39 -0.02 1.72 15 24 H 0.27 15.17 8.31 -92.71 -0.77 14.40 15 25 H 0.15 5.10 7.52 -2.91 -0.02 5.08 15 26 H 0.18 3.36 8.06 -2.91 -0.02 3.34 15 Total: -1.00 -59.11 251.08 6.77 -52.34 By element: Atomic # 1 Polarization: -1.69 SS G_CDS: 1.15 Total: -0.54 kcal Atomic # 6 Polarization: -33.88 SS G_CDS: 2.08 Total: -31.80 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: 0.30 Total: -56.52 kcal Atomic # 9 Polarization: -8.68 SS G_CDS: 1.49 Total: -7.20 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 1.83 Total: 44.66 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -0.08 Total: -0.94 kcal Total: -59.11 6.77 -52.34 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261053845.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.719 kcal (2) G-P(sol) polarization free energy of solvation -59.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds