Wall clock time and date at job start Mon Mar 30 2020 05:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46773 * 2 1 4 4 C 1.50694 * 109.47299 * 239.99921 * 2 1 3 5 5 H 1.08001 * 119.99907 * 245.46117 * 4 2 1 6 6 C 1.37875 * 120.00282 * 65.46943 * 4 2 1 7 7 N 1.31516 * 119.99862 * 9.58212 * 6 4 2 8 8 Si 1.86800 * 120.00189 * 189.59561 * 6 4 2 9 9 H 1.48499 * 109.47294 * 84.98636 * 8 6 4 10 10 H 1.48493 * 109.47157 * 204.99067 * 8 6 4 11 11 H 1.48505 * 109.46858 * 324.98940 * 8 6 4 12 12 C 1.50706 * 109.46873 * 119.99608 * 2 1 3 13 13 C 1.38218 * 119.99188 * 59.72822 * 12 2 1 14 14 C 1.38430 * 120.02370 * 180.27228 * 13 12 2 15 15 F 1.35102 * 119.99604 * 180.02562 * 14 13 12 16 16 C 1.38461 * 120.00749 * 0.02562 * 14 13 12 17 17 C 1.38259 * 119.98912 * 359.97438 * 16 14 13 18 18 Cl 1.73598 * 120.01116 * 180.02562 * 17 16 14 19 19 C 1.38387 * 119.99218 * 240.00563 * 12 2 1 20 20 F 1.35096 * 120.00821 * 359.69983 * 19 12 2 21 21 H 1.09003 * 109.46677 * 183.25249 * 1 2 3 22 22 H 1.08990 * 109.47497 * 303.25766 * 1 2 3 23 23 H 1.08998 * 109.46824 * 63.25775 * 1 2 3 24 24 H 0.96997 * 119.99704 * 180.02562 * 7 6 4 25 25 H 1.08000 * 119.99003 * 0.25115 * 13 12 2 26 26 H 1.08002 * 120.00248 * 180.02562 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5786 -1.6370 -1.1337 6 6 1.7949 -0.1773 -2.4795 7 7 1.3001 1.0359 -2.5935 8 14 2.1753 -1.1784 -4.0101 9 1 1.0228 -2.0607 -4.3237 10 1 2.4224 -0.2621 -5.1521 11 1 3.3834 -2.0084 -3.7710 12 6 2.0323 -0.7104 1.2306 13 6 1.6936 -2.0320 1.4521 14 6 2.1500 -2.6834 2.5850 15 9 1.8191 -3.9754 2.8007 16 6 2.9456 -2.0111 3.4972 17 6 3.2847 -0.6891 3.2761 18 17 4.2827 0.1542 4.4191 19 6 2.8278 -0.0376 2.1415 20 9 3.1591 1.2540 1.9246 21 1 -0.3633 -1.0261 0.0583 22 1 -0.3634 0.5635 0.8592 23 1 -0.3633 0.4624 -0.9177 24 1 1.1327 1.4107 -3.4723 25 1 1.0725 -2.5565 0.7412 26 1 3.3020 -2.5196 4.3809 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261053846.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:15 Heat of formation + Delta-G solvation = -87.206061 kcal Electronic energy + Delta-G solvation = -15453.504302 eV Core-core repulsion = 12386.563590 eV Total energy + Delta-G solvation = -3066.940712 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.032 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -48.71482 -48.42637 -38.75517 -36.51871 -34.46254 -31.69085 -29.69294 -28.65584 -25.25334 -23.58296 -22.29937 -20.20569 -17.36466 -17.20077 -16.90387 -16.08708 -15.56021 -14.99310 -14.72042 -14.64283 -13.89685 -13.54824 -13.01611 -12.72150 -12.58321 -12.21945 -11.88048 -11.35674 -11.27278 -11.02763 -10.93266 -10.71239 -10.42448 -10.34831 -9.68128 -9.27271 -8.49002 -8.47088 -8.12805 -6.16524 -4.20964 1.15740 1.32149 2.08072 3.24569 3.31695 3.33946 3.64618 4.33505 4.42719 4.45409 4.98105 5.17391 5.22912 5.35785 5.70733 6.05922 6.18114 6.40900 6.49326 6.65427 6.78613 6.92714 7.10440 7.51328 7.68243 7.81556 8.15333 8.80305 9.43224 10.92166 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.025422 B = 0.007715 C = 0.006661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.141904 B = 3628.616042 C = 4202.858831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.068 3.932 3 H 0.056 0.944 4 C -0.519 4.519 5 H 0.060 0.940 6 C 0.068 3.932 7 N -0.883 5.883 8 Si 0.893 3.107 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.273 1.273 12 C -0.024 4.024 13 C -0.115 4.115 14 C 0.095 3.905 15 F -0.137 7.137 16 C -0.148 4.148 17 C -0.049 4.049 18 Cl -0.057 7.057 19 C 0.091 3.909 20 F -0.121 7.121 21 H 0.034 0.966 22 H 0.017 0.983 23 H 0.073 0.927 24 H 0.264 0.736 25 H 0.152 0.848 26 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.634 -4.132 10.280 11.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.049 3.951 3 H 0.074 0.926 4 C -0.557 4.557 5 H 0.079 0.921 6 C -0.135 4.135 7 N -0.520 5.520 8 Si 0.721 3.279 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.198 1.198 12 C -0.025 4.025 13 C -0.134 4.134 14 C 0.076 3.924 15 F -0.116 7.116 16 C -0.168 4.168 17 C -0.077 4.077 18 Cl -0.028 7.028 19 C 0.071 3.929 20 F -0.099 7.099 21 H 0.053 0.947 22 H 0.036 0.964 23 H 0.092 0.908 24 H 0.074 0.926 25 H 0.169 0.831 26 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.671 -3.905 10.245 11.090 hybrid contribution 0.359 -0.449 -0.727 0.927 sum 2.030 -4.353 9.518 10.661 Atomic orbital electron populations 1.21764 0.97121 0.99119 1.00527 1.17990 0.93009 0.96769 0.87303 0.92597 1.20977 1.36860 1.08260 0.89587 0.92142 1.24937 0.94907 0.94601 0.99039 1.69961 1.44069 1.13768 1.24158 0.86581 0.78883 0.80085 0.82380 1.20362 1.21169 1.19815 1.20669 0.92524 0.93416 0.95881 1.21107 1.01484 0.94594 0.96189 1.17475 0.99610 0.79231 0.96115 1.91487 1.91017 1.34245 1.94839 1.20552 1.01948 0.92850 1.01408 1.20570 1.00643 0.93593 0.92848 1.98357 1.67798 1.77531 1.59089 1.17375 1.00644 0.80340 0.94546 1.91515 1.90614 1.33340 1.94479 0.94728 0.96421 0.90776 0.92629 0.83053 0.83729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.82 8.93 37.16 0.33 -2.49 15 2 C 0.07 1.61 2.32 -92.92 -0.22 1.39 15 3 H 0.06 1.48 7.07 -51.93 -0.37 1.11 15 4 C -0.52 -13.42 8.19 -34.44 -0.28 -13.70 15 5 H 0.06 1.54 7.56 -52.49 -0.40 1.15 15 6 C 0.07 1.80 5.17 -17.82 -0.09 1.71 15 7 N -0.88 -24.31 12.16 55.43 0.67 -23.63 15 8 Si 0.89 20.44 29.55 -169.99 -5.02 15.41 15 9 H -0.28 -6.26 7.11 56.52 0.40 -5.86 15 10 H -0.29 -6.55 7.11 56.52 0.40 -6.15 15 11 H -0.27 -6.22 7.11 56.52 0.40 -5.81 15 12 C -0.02 -0.48 4.75 -104.57 -0.50 -0.98 15 13 C -0.11 -2.07 8.60 -39.52 -0.34 -2.41 15 14 C 0.10 1.53 7.30 -39.43 -0.29 1.24 15 15 F -0.14 -2.11 17.27 2.25 0.04 -2.07 15 16 C -0.15 -2.20 9.81 -39.49 -0.39 -2.59 15 17 C -0.05 -0.80 6.32 -39.45 -0.25 -1.05 15 18 Cl -0.06 -0.82 28.62 -51.86 -1.48 -2.31 15 19 C 0.09 1.76 7.22 -39.40 -0.28 1.47 15 20 F -0.12 -2.48 15.76 2.25 0.04 -2.44 15 21 H 0.03 0.70 7.27 -51.93 -0.38 0.32 15 22 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 15 23 H 0.07 1.80 6.84 -51.93 -0.36 1.45 15 24 H 0.26 6.93 8.31 -40.82 -0.34 6.59 15 25 H 0.15 2.67 7.54 -52.49 -0.40 2.28 15 26 H 0.14 1.75 8.06 -52.49 -0.42 1.33 15 LS Contribution 254.08 15.07 3.83 3.83 Total: -1.00 -26.19 254.08 -6.11 -32.30 By element: Atomic # 1 Polarization: -1.80 SS G_CDS: -1.87 Total: -3.68 kcal Atomic # 6 Polarization: -15.11 SS G_CDS: -2.30 Total: -17.41 kcal Atomic # 7 Polarization: -24.31 SS G_CDS: 0.67 Total: -23.63 kcal Atomic # 9 Polarization: -4.59 SS G_CDS: 0.07 Total: -4.51 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.41 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -1.48 Total: -2.31 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -26.19 -6.11 -32.30 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261053846.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.910 kcal (2) G-P(sol) polarization free energy of solvation -26.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds