Wall clock time and date at job start Mon Mar 30 2020 05:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46773 * 2 1 4 4 C 1.50694 * 109.47299 * 239.99921 * 2 1 3 5 5 H 1.08001 * 119.99907 * 245.46117 * 4 2 1 6 6 C 1.37875 * 120.00282 * 65.46943 * 4 2 1 7 7 N 1.31516 * 119.99862 * 9.58212 * 6 4 2 8 8 Si 1.86800 * 120.00189 * 189.59561 * 6 4 2 9 9 H 1.48499 * 109.47294 * 84.98636 * 8 6 4 10 10 H 1.48493 * 109.47157 * 204.99067 * 8 6 4 11 11 H 1.48505 * 109.46858 * 324.98940 * 8 6 4 12 12 C 1.50706 * 109.46873 * 119.99608 * 2 1 3 13 13 C 1.38218 * 119.99188 * 59.72822 * 12 2 1 14 14 C 1.38430 * 120.02370 * 180.27228 * 13 12 2 15 15 F 1.35102 * 119.99604 * 180.02562 * 14 13 12 16 16 C 1.38461 * 120.00749 * 0.02562 * 14 13 12 17 17 C 1.38259 * 119.98912 * 359.97438 * 16 14 13 18 18 Cl 1.73598 * 120.01116 * 180.02562 * 17 16 14 19 19 C 1.38387 * 119.99218 * 240.00563 * 12 2 1 20 20 F 1.35096 * 120.00821 * 359.69983 * 19 12 2 21 21 H 1.09003 * 109.46677 * 183.25249 * 1 2 3 22 22 H 1.08990 * 109.47497 * 303.25766 * 1 2 3 23 23 H 1.08998 * 109.46824 * 63.25775 * 1 2 3 24 24 H 0.96997 * 119.99704 * 180.02562 * 7 6 4 25 25 H 1.08000 * 119.99003 * 0.25115 * 13 12 2 26 26 H 1.08002 * 120.00248 * 180.02562 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5786 -1.6370 -1.1337 6 6 1.7949 -0.1773 -2.4795 7 7 1.3001 1.0359 -2.5935 8 14 2.1753 -1.1784 -4.0101 9 1 1.0228 -2.0607 -4.3237 10 1 2.4224 -0.2621 -5.1521 11 1 3.3834 -2.0084 -3.7710 12 6 2.0323 -0.7104 1.2306 13 6 1.6936 -2.0320 1.4521 14 6 2.1500 -2.6834 2.5850 15 9 1.8191 -3.9754 2.8007 16 6 2.9456 -2.0111 3.4972 17 6 3.2847 -0.6891 3.2761 18 17 4.2827 0.1542 4.4191 19 6 2.8278 -0.0376 2.1415 20 9 3.1591 1.2540 1.9246 21 1 -0.3633 -1.0261 0.0583 22 1 -0.3634 0.5635 0.8592 23 1 -0.3633 0.4624 -0.9177 24 1 1.1327 1.4107 -3.4723 25 1 1.0725 -2.5565 0.7412 26 1 3.3020 -2.5196 4.3809 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261053846.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:15 Heat of formation + Delta-G solvation = -99.479891 kcal Electronic energy + Delta-G solvation = -15454.036536 eV Core-core repulsion = 12386.563590 eV Total energy + Delta-G solvation = -3067.472946 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.032 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.97910 -49.95053 -40.17230 -37.80524 -36.19466 -33.50058 -31.08513 -30.23554 -27.21749 -25.10912 -23.71197 -21.87476 -18.79985 -18.77491 -18.31565 -17.84098 -16.96624 -16.57386 -16.39139 -15.96868 -15.29441 -15.00019 -14.74620 -14.31152 -13.93588 -13.77105 -13.59290 -13.12067 -12.87097 -12.71027 -12.32244 -12.25457 -12.20900 -12.00102 -11.42202 -11.13348 -10.49529 -9.88233 -9.55243 -8.16859 -6.27228 -0.21932 -0.04385 0.80444 1.43556 1.44864 1.53563 2.23330 2.44587 3.03968 3.10870 3.16543 3.62390 3.85743 4.00292 4.31906 4.61955 4.78465 4.83483 4.94575 5.03910 5.10061 5.15140 5.56608 5.63404 5.81818 5.87466 6.20959 6.80488 7.40088 8.91678 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.025422 B = 0.007715 C = 0.006661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.141904 B = 3628.616042 C = 4202.858831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.068 3.932 3 H 0.017 0.983 4 C -0.529 4.529 5 H 0.060 0.940 6 C 0.020 3.980 7 N -0.915 5.915 8 Si 0.954 3.046 9 H -0.269 1.269 10 H -0.287 1.287 11 H -0.269 1.269 12 C -0.047 4.047 13 C -0.117 4.117 14 C 0.107 3.893 15 F -0.128 7.128 16 C -0.125 4.125 17 C -0.045 4.045 18 Cl -0.036 7.036 19 C 0.071 3.929 20 F -0.136 7.136 21 H 0.050 0.950 22 H 0.031 0.969 23 H 0.046 0.954 24 H 0.264 0.736 25 H 0.152 0.848 26 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.160 -5.977 11.599 13.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.049 3.951 3 H 0.035 0.965 4 C -0.566 4.566 5 H 0.078 0.922 6 C -0.180 4.180 7 N -0.554 5.554 8 Si 0.779 3.221 9 H -0.195 1.195 10 H -0.213 1.213 11 H -0.194 1.194 12 C -0.048 4.048 13 C -0.136 4.136 14 C 0.088 3.912 15 F -0.106 7.106 16 C -0.144 4.144 17 C -0.072 4.072 18 Cl -0.006 7.006 19 C 0.051 3.949 20 F -0.115 7.115 21 H 0.069 0.931 22 H 0.050 0.950 23 H 0.065 0.935 24 H 0.073 0.927 25 H 0.169 0.831 26 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 2.198 -5.761 11.577 13.117 hybrid contribution 0.236 0.109 -1.017 1.050 sum 2.434 -5.653 10.560 12.222 Atomic orbital electron populations 1.21616 0.96296 1.00002 0.99680 1.17766 0.93783 0.94876 0.88660 0.96507 1.21298 1.36403 1.08214 0.90715 0.92187 1.25695 0.94990 0.95408 1.01896 1.70083 1.45440 1.15213 1.24632 0.85633 0.78923 0.78677 0.78866 1.19474 1.21282 1.19361 1.20304 0.94566 0.94439 0.95473 1.21051 1.01672 0.93724 0.97156 1.17344 0.99073 0.79413 0.95414 1.91520 1.90882 1.33573 1.94671 1.20898 0.99876 0.91873 1.01745 1.20579 1.00347 0.94069 0.92240 1.98369 1.67033 1.77332 1.57912 1.17565 1.01558 0.80021 0.95798 1.91471 1.90863 1.34428 1.94741 0.93125 0.94976 0.93533 0.92738 0.83063 0.79998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.32 8.93 71.98 0.64 -4.68 15 2 C 0.07 3.30 2.32 -12.28 -0.03 3.27 15 3 H 0.02 0.93 7.07 -2.39 -0.02 0.92 15 4 C -0.53 -27.73 8.19 25.60 0.21 -27.52 15 5 H 0.06 3.07 7.56 -2.91 -0.02 3.05 15 6 C 0.02 1.07 5.17 84.65 0.44 1.50 15 7 N -0.92 -51.84 12.16 21.45 0.26 -51.58 15 8 Si 0.95 42.12 29.55 68.60 2.03 44.14 15 9 H -0.27 -11.46 7.11 99.48 0.71 -10.75 15 10 H -0.29 -12.63 7.11 99.48 0.71 -11.92 15 11 H -0.27 -11.58 7.11 99.48 0.71 -10.88 15 12 C -0.05 -1.89 4.75 -19.83 -0.09 -1.98 15 13 C -0.12 -4.06 8.60 22.31 0.19 -3.87 15 14 C 0.11 3.11 7.30 22.37 0.16 3.27 15 15 F -0.13 -3.46 17.27 44.97 0.78 -2.69 15 16 C -0.12 -3.24 9.81 22.33 0.22 -3.02 15 17 C -0.04 -1.36 6.32 22.36 0.14 -1.22 15 18 Cl -0.04 -0.94 28.62 -2.72 -0.08 -1.02 15 19 C 0.07 2.69 7.22 22.39 0.16 2.85 15 20 F -0.14 -5.70 15.76 44.97 0.71 -4.99 15 21 H 0.05 2.05 7.27 -2.39 -0.02 2.03 15 22 H 0.03 1.29 8.14 -2.39 -0.02 1.28 15 23 H 0.05 2.32 6.84 -2.39 -0.02 2.30 15 24 H 0.26 14.21 8.31 -92.71 -0.77 13.44 15 25 H 0.15 5.16 7.54 -2.91 -0.02 5.14 15 26 H 0.18 3.41 8.06 -2.91 -0.02 3.38 15 Total: -1.00 -56.47 254.08 6.95 -49.52 By element: Atomic # 1 Polarization: -3.22 SS G_CDS: 1.21 Total: -2.00 kcal Atomic # 6 Polarization: -33.43 SS G_CDS: 2.04 Total: -31.39 kcal Atomic # 7 Polarization: -51.84 SS G_CDS: 0.26 Total: -51.58 kcal Atomic # 9 Polarization: -9.16 SS G_CDS: 1.49 Total: -7.68 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.14 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -0.08 Total: -1.02 kcal Total: -56.47 6.95 -49.52 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261053846.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.958 kcal (2) G-P(sol) polarization free energy of solvation -56.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds