Wall clock time and date at job start Mon Mar 30 2020 06:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.32017 * 118.81920 * 2 1 4 4 C 1.31931 * 121.08718 * 179.97438 * 3 2 1 5 5 C 1.50703 * 120.61198 * 180.02562 * 4 3 2 6 6 C 1.41107 * 118.77835 * 0.02562 * 4 3 2 7 7 C 1.41417 * 121.04872 * 179.97438 * 6 4 3 8 8 H 1.07998 * 120.00187 * 136.08339 * 7 6 4 9 9 C 1.39962 * 119.99484 * 316.07995 * 7 6 4 10 10 N 1.30810 * 120.00368 * 334.89987 * 9 7 6 11 11 Si 1.86806 * 119.99577 * 154.62262 * 9 7 6 12 12 H 1.48496 * 109.47047 * 270.27351 * 11 9 7 13 13 H 1.48500 * 109.47101 * 30.27801 * 11 9 7 14 14 H 1.48505 * 109.46865 * 150.27392 * 11 9 7 15 15 C 1.41070 * 117.90275 * 0.24756 * 6 4 3 16 16 C 1.50704 * 120.60551 * 179.72932 * 15 6 4 17 17 F 1.39900 * 109.47386 * 62.38809 * 16 15 6 18 18 F 1.39906 * 109.46887 * 182.38468 * 16 15 6 19 19 F 1.39894 * 109.47263 * 302.38291 * 16 15 6 20 20 N 1.31957 * 118.78253 * 359.49021 * 15 6 4 21 21 H 1.09006 * 109.47054 * 89.99872 * 1 2 3 22 22 H 1.08997 * 109.47448 * 209.99836 * 1 2 3 23 23 H 1.09005 * 109.47147 * 330.00002 * 1 2 3 24 24 H 1.09002 * 109.46998 * 269.97969 * 5 4 3 25 25 H 1.09001 * 109.47226 * 29.98052 * 5 4 3 26 26 H 1.09003 * 109.47056 * 149.97902 * 5 4 3 27 27 H 0.97004 * 120.00070 * 356.85444 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1433 1.1567 0.0000 4 6 3.4616 1.2089 0.0005 5 6 4.1771 2.5352 0.0011 6 6 4.1893 -0.0001 0.0005 7 6 5.6035 -0.0001 0.0005 8 1 6.1435 -0.6739 0.6492 9 6 6.3032 0.8730 -0.8403 10 7 5.7418 1.3172 -1.9352 11 14 8.0361 1.4101 -0.3951 12 1 7.9754 2.6423 0.4315 13 1 8.7067 0.3309 0.3735 14 1 8.8037 1.6842 -1.6365 15 6 3.4617 -1.2086 -0.0054 16 6 4.1772 -2.5350 -0.0119 17 9 4.9366 -2.6609 1.1563 18 9 3.2386 -3.5708 -0.0719 19 9 5.0203 -2.6046 -1.1261 20 7 2.1432 -1.1564 -0.0004 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3634 0.8900 0.5139 24 1 4.3503 2.8551 -1.0265 25 1 3.5659 3.2775 0.5146 26 1 5.1325 2.4324 0.5156 27 1 4.8584 1.0061 -2.1879 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261061465.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:59 Heat of formation + Delta-G solvation = -131.304853 kcal Electronic energy + Delta-G solvation = -18464.418124 eV Core-core repulsion = 14999.521520 eV Total energy + Delta-G solvation = -3464.896604 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.23565 -46.77480 -46.70221 -39.76496 -35.28906 -33.23657 -31.82107 -28.46413 -28.01425 -26.36157 -24.08383 -21.38189 -21.00288 -18.36665 -17.87732 -17.61872 -17.14961 -15.97282 -14.57647 -14.41467 -13.99523 -13.66325 -13.60396 -13.56912 -13.22585 -13.01581 -12.91833 -12.73735 -12.36657 -12.19387 -11.84500 -11.72726 -11.47929 -11.25788 -10.94803 -10.80473 -10.57758 -9.78797 -9.53353 -9.18778 -8.27873 -8.09500 -7.58865 -5.01412 1.91723 2.20125 3.01257 3.03817 3.20513 3.53317 3.77001 4.25578 4.51995 4.71827 4.92832 5.09701 5.40356 5.60412 5.94541 6.08929 6.16379 6.28186 6.32953 6.48808 6.51310 6.80707 6.95260 7.18230 7.44217 7.56815 7.75924 8.22970 8.33713 9.25976 9.64585 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.020743 B = 0.012515 C = 0.008602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.527765 B = 2236.810638 C = 3254.273264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.171 3.829 3 N -0.481 5.481 4 C 0.098 3.902 5 C -0.083 4.083 6 C 0.026 3.974 7 C -0.490 4.490 8 H 0.095 0.905 9 C 0.039 3.961 10 N -0.766 5.766 11 Si 1.069 2.931 12 H -0.268 1.268 13 H -0.271 1.271 14 H -0.272 1.272 15 C -0.054 4.054 16 C 0.541 3.459 17 F -0.184 7.184 18 F -0.183 7.183 19 F -0.173 7.173 20 N -0.457 5.457 21 H 0.061 0.939 22 H 0.066 0.934 23 H 0.067 0.933 24 H 0.078 0.922 25 H 0.054 0.946 26 H 0.076 0.924 27 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.104 -0.405 2.130 2.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.092 4.092 3 N -0.194 5.194 4 C -0.058 4.058 5 C -0.140 4.140 6 C 0.018 3.982 7 C -0.518 4.518 8 H 0.113 0.887 9 C -0.184 4.184 10 N -0.387 5.387 11 Si 0.891 3.109 12 H -0.194 1.194 13 H -0.196 1.196 14 H -0.196 1.196 15 C -0.202 4.202 16 C 0.486 3.514 17 F -0.166 7.166 18 F -0.165 7.165 19 F -0.155 7.155 20 N -0.170 5.170 21 H 0.080 0.920 22 H 0.085 0.915 23 H 0.086 0.914 24 H 0.096 0.904 25 H 0.073 0.927 26 H 0.094 0.906 27 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.281 0.465 1.574 1.665 hybrid contribution -0.359 -1.341 0.445 1.457 sum -0.078 -0.876 2.019 2.202 Atomic orbital electron populations 1.20088 0.87540 1.02008 1.01712 1.22017 0.96437 0.82824 1.07969 1.67449 1.10538 1.30370 1.11085 1.21830 0.88400 0.95257 1.00343 1.20662 0.99109 0.91499 1.02728 1.18659 0.95570 0.91120 0.92810 1.20672 0.90336 1.19843 1.20964 0.88675 1.27137 1.07185 0.92070 0.92046 1.70470 1.16669 1.33923 1.17650 0.83565 0.72276 0.77716 0.77389 1.19359 1.19622 1.19646 1.21088 0.90514 0.91889 1.16707 1.17634 0.76358 0.83953 0.73485 1.93129 1.77402 1.96406 1.49632 1.93117 1.65563 1.61659 1.96129 1.93166 1.72502 1.96614 1.53169 1.67003 1.09023 1.31419 1.09512 0.92048 0.91466 0.91366 0.90372 0.92673 0.90561 0.89204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.97 10.30 36.00 0.37 -0.60 15 2 C 0.17 3.96 7.64 -156.84 -1.20 2.76 15 3 N -0.48 -11.46 10.24 -6.38 -0.07 -11.52 15 4 C 0.10 2.37 6.16 -81.46 -0.50 1.86 15 5 C -0.08 -1.74 8.48 36.01 0.31 -1.44 15 6 C 0.03 0.65 4.80 -106.53 -0.51 0.14 15 7 C -0.49 -11.79 6.93 -37.73 -0.26 -12.05 15 8 H 0.10 2.29 6.95 -52.49 -0.36 1.92 15 9 C 0.04 0.89 3.33 -17.34 -0.06 0.83 15 10 N -0.77 -18.24 11.42 55.55 0.63 -17.60 15 11 Si 1.07 19.38 29.87 -169.99 -5.08 14.30 15 12 H -0.27 -4.58 7.11 56.52 0.40 -4.18 15 13 H -0.27 -4.77 7.11 56.52 0.40 -4.37 15 14 H -0.27 -4.91 7.11 56.52 0.40 -4.51 15 15 C -0.05 -1.36 6.35 -81.46 -0.52 -1.87 15 16 C 0.54 12.54 2.92 36.01 0.11 12.64 15 17 F -0.18 -4.11 16.12 2.25 0.04 -4.08 15 18 F -0.18 -4.07 16.90 2.25 0.04 -4.03 15 19 F -0.17 -4.03 16.50 2.25 0.04 -3.99 15 20 N -0.46 -11.22 9.75 -6.38 -0.06 -11.28 15 21 H 0.06 1.00 8.14 -51.93 -0.42 0.58 15 22 H 0.07 1.10 8.14 -51.93 -0.42 0.68 15 23 H 0.07 1.10 8.14 -51.93 -0.42 0.68 15 24 H 0.08 1.67 6.72 -51.93 -0.35 1.32 15 25 H 0.05 1.05 8.14 -51.93 -0.42 0.62 15 26 H 0.08 1.58 6.27 -51.93 -0.33 1.25 15 27 H 0.30 7.48 7.22 -40.82 -0.29 7.19 15 LS Contribution 248.74 15.07 3.75 3.75 Total: -1.00 -26.19 248.74 -4.80 -30.98 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: -1.82 Total: 1.19 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: -2.27 Total: 2.27 kcal Atomic # 7 Polarization: -40.91 SS G_CDS: 0.51 Total: -40.40 kcal Atomic # 9 Polarization: -12.21 SS G_CDS: 0.11 Total: -12.09 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.08 Total: 14.30 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -26.19 -4.80 -30.98 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261061465.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.320 kcal (2) G-P(sol) polarization free energy of solvation -26.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds