Wall clock time and date at job start Mon Mar 30 2020 06:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.32017 * 118.81920 * 2 1 4 4 C 1.31931 * 121.08718 * 179.97438 * 3 2 1 5 5 C 1.50703 * 120.61198 * 180.02562 * 4 3 2 6 6 C 1.41107 * 118.77835 * 0.02562 * 4 3 2 7 7 C 1.41417 * 121.04872 * 179.97438 * 6 4 3 8 8 H 1.07998 * 120.00187 * 136.08339 * 7 6 4 9 9 C 1.39962 * 119.99484 * 316.07995 * 7 6 4 10 10 N 1.30810 * 120.00368 * 334.89987 * 9 7 6 11 11 Si 1.86806 * 119.99577 * 154.62262 * 9 7 6 12 12 H 1.48496 * 109.47047 * 270.27351 * 11 9 7 13 13 H 1.48500 * 109.47101 * 30.27801 * 11 9 7 14 14 H 1.48505 * 109.46865 * 150.27392 * 11 9 7 15 15 C 1.41070 * 117.90275 * 0.24756 * 6 4 3 16 16 C 1.50704 * 120.60551 * 179.72932 * 15 6 4 17 17 F 1.39900 * 109.47386 * 62.38809 * 16 15 6 18 18 F 1.39906 * 109.46887 * 182.38468 * 16 15 6 19 19 F 1.39894 * 109.47263 * 302.38291 * 16 15 6 20 20 N 1.31957 * 118.78253 * 359.49021 * 15 6 4 21 21 H 1.09006 * 109.47054 * 89.99872 * 1 2 3 22 22 H 1.08997 * 109.47448 * 209.99836 * 1 2 3 23 23 H 1.09005 * 109.47147 * 330.00002 * 1 2 3 24 24 H 1.09002 * 109.46998 * 269.97969 * 5 4 3 25 25 H 1.09001 * 109.47226 * 29.98052 * 5 4 3 26 26 H 1.09003 * 109.47056 * 149.97902 * 5 4 3 27 27 H 0.97004 * 120.00070 * 356.85444 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1433 1.1567 0.0000 4 6 3.4616 1.2089 0.0005 5 6 4.1771 2.5352 0.0011 6 6 4.1893 -0.0001 0.0005 7 6 5.6035 -0.0001 0.0005 8 1 6.1435 -0.6739 0.6492 9 6 6.3032 0.8730 -0.8403 10 7 5.7418 1.3172 -1.9352 11 14 8.0361 1.4101 -0.3951 12 1 7.9754 2.6423 0.4315 13 1 8.7067 0.3309 0.3735 14 1 8.8037 1.6842 -1.6365 15 6 3.4617 -1.2086 -0.0054 16 6 4.1772 -2.5350 -0.0119 17 9 4.9366 -2.6609 1.1563 18 9 3.2386 -3.5708 -0.0719 19 9 5.0203 -2.6046 -1.1261 20 7 2.1432 -1.1564 -0.0004 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3634 0.8900 0.5139 24 1 4.3503 2.8551 -1.0265 25 1 3.5659 3.2775 0.5146 26 1 5.1325 2.4324 0.5156 27 1 4.8584 1.0061 -2.1879 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261061465.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:59 Heat of formation + Delta-G solvation = -145.635109 kcal Electronic energy + Delta-G solvation = -18465.039531 eV Core-core repulsion = 14999.521520 eV Total energy + Delta-G solvation = -3465.518010 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -51.07200 -48.59170 -48.55171 -41.57856 -37.06685 -35.06313 -33.54938 -30.14795 -29.72938 -28.16432 -25.86877 -23.18272 -22.78215 -20.15170 -19.70599 -19.46197 -18.96091 -17.79220 -16.36685 -16.13277 -15.59474 -15.42134 -15.41185 -15.32154 -15.04204 -14.83663 -14.75459 -14.47245 -14.02310 -13.85277 -13.56560 -13.20542 -13.07377 -12.99429 -12.53166 -12.43844 -11.96753 -11.48842 -11.36324 -10.93830 -10.12781 -9.93064 -9.40655 -6.86914 0.03847 0.37638 1.54593 1.59596 1.69503 1.82713 2.27193 2.52043 2.69502 2.90770 3.10988 3.40102 3.56449 3.86921 4.19460 4.42053 4.66145 4.76568 4.78923 4.84648 4.90359 5.08002 5.26807 5.36283 5.61635 5.70645 5.93712 6.40891 6.50275 7.41933 7.79562 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.020743 B = 0.012515 C = 0.008602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.527765 B = 2236.810638 C = 3254.273264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 C 0.161 3.839 3 N -0.489 5.489 4 C 0.088 3.912 5 C -0.075 4.075 6 C 0.004 3.996 7 C -0.503 4.503 8 H 0.090 0.910 9 C 0.017 3.983 10 N -0.775 5.775 11 Si 1.111 2.889 12 H -0.247 1.247 13 H -0.263 1.263 14 H -0.270 1.270 15 C -0.081 4.081 16 C 0.545 3.455 17 F -0.180 7.180 18 F -0.178 7.178 19 F -0.176 7.176 20 N -0.472 5.472 21 H 0.077 0.923 22 H 0.080 0.920 23 H 0.085 0.915 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.297 0.339 2.546 2.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.103 4.103 3 N -0.203 5.203 4 C -0.069 4.069 5 C -0.132 4.132 6 C -0.004 4.004 7 C -0.530 4.530 8 H 0.108 0.892 9 C -0.203 4.203 10 N -0.395 5.395 11 Si 0.926 3.074 12 H -0.171 1.171 13 H -0.188 1.188 14 H -0.194 1.194 15 C -0.228 4.228 16 C 0.490 3.510 17 F -0.162 7.162 18 F -0.159 7.159 19 F -0.157 7.157 20 N -0.185 5.185 21 H 0.095 0.905 22 H 0.099 0.901 23 H 0.104 0.896 24 H 0.092 0.908 25 H 0.093 0.907 26 H 0.097 0.903 27 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.453 1.193 1.995 2.368 hybrid contribution -0.508 -1.597 0.314 1.705 sum -0.054 -0.404 2.309 2.344 Atomic orbital electron populations 1.20234 0.83965 1.03561 1.03207 1.23095 0.98674 0.82372 1.06110 1.67582 1.10430 1.30688 1.11604 1.22330 0.88864 0.96164 0.99504 1.20636 0.99283 0.90590 1.02678 1.18958 0.96319 0.91613 0.93496 1.20765 0.90155 1.20699 1.21419 0.89221 1.28373 1.09827 0.91102 0.90954 1.70599 1.15821 1.34579 1.18507 0.83083 0.68202 0.78476 0.77608 1.17117 1.18769 1.19444 1.21413 0.91125 0.92658 1.17586 1.17479 0.76321 0.83710 0.73512 1.93128 1.77298 1.96376 1.49387 1.93120 1.65387 1.61312 1.96116 1.93153 1.72592 1.96617 1.53377 1.67111 1.08887 1.32122 1.10405 0.90458 0.90140 0.89573 0.90776 0.90715 0.90323 0.91146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.71 10.30 71.23 0.73 -0.97 15 2 C 0.16 7.30 7.64 138.62 1.06 8.35 15 3 N -0.49 -22.85 10.24 -174.09 -1.78 -24.64 15 4 C 0.09 4.20 6.16 43.25 0.27 4.47 15 5 C -0.07 -3.07 8.48 71.24 0.60 -2.46 15 6 C 0.00 0.18 4.80 -21.10 -0.10 0.08 15 7 C -0.50 -24.05 6.93 23.47 0.16 -23.88 15 8 H 0.09 4.30 6.95 -2.91 -0.02 4.28 15 9 C 0.02 0.74 3.33 85.26 0.28 1.03 15 10 N -0.77 -36.58 11.42 21.83 0.25 -36.33 15 11 Si 1.11 37.28 29.87 68.60 2.05 39.33 15 12 H -0.25 -7.48 7.11 99.48 0.71 -6.77 15 13 H -0.26 -8.46 7.11 99.48 0.71 -7.76 15 14 H -0.27 -8.97 7.11 99.48 0.71 -8.26 15 15 C -0.08 -4.08 6.35 43.24 0.27 -3.80 15 16 C 0.54 25.26 2.92 71.24 0.21 25.47 15 17 F -0.18 -8.03 16.12 44.97 0.72 -7.31 15 18 F -0.18 -7.84 16.90 44.97 0.76 -7.08 15 19 F -0.18 -8.22 16.50 44.97 0.74 -7.47 15 20 N -0.47 -22.98 9.75 -174.10 -1.70 -24.68 15 21 H 0.08 2.34 8.14 -2.38 -0.02 2.32 15 22 H 0.08 2.45 8.14 -2.39 -0.02 2.44 15 23 H 0.09 2.55 8.14 -2.38 -0.02 2.53 15 24 H 0.07 3.11 6.72 -2.39 -0.02 3.10 15 25 H 0.07 2.71 8.14 -2.39 -0.02 2.69 15 26 H 0.08 3.15 6.27 -2.39 -0.01 3.13 15 27 H 0.28 14.18 7.22 -92.71 -0.67 13.51 15 Total: -1.00 -54.55 248.74 5.86 -48.69 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: 1.32 Total: 11.21 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: 3.49 Total: 8.28 kcal Atomic # 7 Polarization: -82.42 SS G_CDS: -3.23 Total: -85.65 kcal Atomic # 9 Polarization: -24.09 SS G_CDS: 2.23 Total: -21.86 kcal Atomic # 14 Polarization: 37.28 SS G_CDS: 2.05 Total: 39.33 kcal Total: -54.55 5.86 -48.69 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261061465.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.941 kcal (2) G-P(sol) polarization free energy of solvation -54.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds