Wall clock time and date at job start Mon Mar 30 2020 06:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86794 * 120.00176 * 2 1 4 4 H 1.48501 * 109.47342 * 269.99991 * 3 2 1 5 5 H 1.48507 * 109.47355 * 30.00097 * 3 2 1 6 6 H 1.48507 * 109.47438 * 149.99954 * 3 2 1 7 7 C 1.37882 * 119.99669 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99567 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00270 * 0.02562 * 7 2 1 10 10 H 1.08997 * 110.37929 * 302.20764 * 9 7 2 11 11 C 1.54445 * 110.31763 * 64.42943 * 9 7 2 12 12 C 1.54440 * 101.99143 * 144.62007 * 11 9 7 13 13 C 1.51329 * 104.98779 * 334.26648 * 12 11 9 14 14 N 1.35217 * 141.94519 * 196.92568 * 13 12 11 15 15 H 0.96998 * 126.02897 * 359.97438 * 14 13 12 16 16 N 1.39996 * 107.93373 * 179.75446 * 14 13 12 17 17 C 1.30729 * 108.21702 * 0.41317 * 16 14 13 18 18 C 1.50703 * 125.88119 * 179.85413 * 17 16 14 19 19 F 1.39905 * 109.47157 * 269.69339 * 18 17 16 20 20 F 1.39900 * 109.47159 * 149.69640 * 18 17 16 21 21 F 1.39897 * 109.47274 * 29.69331 * 18 17 16 22 22 C 1.35136 * 110.30491 * 16.92341 * 13 12 11 23 23 H 0.97005 * 119.99944 * 0.02562 * 1 2 3 24 24 H 1.09001 * 110.94043 * 26.43636 * 11 9 7 25 25 H 1.09008 * 110.94784 * 262.80019 * 11 9 7 26 26 H 1.08996 * 110.33535 * 215.38753 * 12 11 9 27 27 H 1.08998 * 110.33826 * 93.14147 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.5892 -2.5554 0.8648 11 6 0.4419 -2.6513 -1.3062 12 6 0.5394 -4.1701 -1.5690 13 6 1.8160 -4.6049 -0.8825 14 7 2.7106 -5.6180 -0.8406 15 1 2.6773 -6.4307 -1.3689 16 7 3.6959 -5.2845 0.0963 17 6 3.3982 -4.1175 0.6047 18 6 4.1917 -3.3829 1.6544 19 9 3.7289 -3.7419 2.9250 20 9 4.0384 -2.0039 1.4748 21 9 5.5442 -3.7208 1.5381 22 6 2.2171 -3.6643 0.0011 23 1 -0.4850 0.8401 -0.0004 24 1 0.9012 -2.0856 -2.1169 25 1 -0.5947 -2.3473 -1.1605 26 1 0.5993 -4.3662 -2.6395 27 1 -0.3180 -4.6853 -1.1360 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261075395.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:56 Heat of formation + Delta-G solvation = -68.865743 kcal Electronic energy + Delta-G solvation = -18388.932801 eV Core-core repulsion = 14926.743761 eV Total energy + Delta-G solvation = -3462.189041 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.49641 -47.08142 -46.92073 -41.19501 -35.83468 -32.49128 -31.73180 -27.77541 -27.52657 -25.95604 -23.63160 -20.90695 -20.39011 -19.22758 -17.90296 -17.56998 -16.96841 -16.64214 -16.05637 -14.64643 -14.44576 -13.93286 -13.77523 -13.43983 -13.36372 -13.12437 -13.05262 -12.64638 -12.28360 -12.00153 -11.87834 -11.46597 -11.04895 -10.80875 -10.52668 -10.26118 -10.05067 -9.51299 -9.34699 -8.99662 -8.39151 -7.67592 -5.99334 -3.99789 1.96210 2.61868 3.00737 3.35158 3.40727 3.42659 3.49119 4.26483 4.50088 4.69963 5.01204 5.03865 5.36844 5.54053 5.73585 5.84082 5.94616 6.25311 6.52944 6.86781 6.98239 7.13464 7.47859 7.55939 7.71695 7.81463 8.00962 8.40131 9.02931 9.64359 11.10311 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.020748 B = 0.011763 C = 0.008253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.175416 B = 2379.859347 C = 3391.729334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.063 3.937 3 Si 0.887 3.113 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.271 1.271 7 C -0.509 4.509 8 H 0.072 0.928 9 C 0.108 3.892 10 H 0.047 0.953 11 C -0.087 4.087 12 C -0.046 4.046 13 C 0.033 3.967 14 N -0.449 5.449 15 H 0.435 0.565 16 N -0.255 5.255 17 C 0.000 4.000 18 C 0.550 3.450 19 F -0.177 7.177 20 F -0.137 7.137 21 F -0.183 7.183 22 C -0.160 4.160 23 H 0.260 0.740 24 H 0.065 0.935 25 H 0.078 0.922 26 H 0.065 0.935 27 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.534 -8.350 -1.483 8.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.138 4.138 3 Si 0.715 3.285 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.196 1.196 7 C -0.547 4.547 8 H 0.090 0.910 9 C 0.089 3.911 10 H 0.064 0.936 11 C -0.126 4.126 12 C -0.085 4.085 13 C -0.095 4.095 14 N -0.159 5.159 15 H 0.279 0.721 16 N -0.081 5.081 17 C -0.165 4.165 18 C 0.494 3.506 19 F -0.159 7.159 20 F -0.118 7.118 21 F -0.164 7.164 22 C -0.171 4.171 23 H 0.069 0.931 24 H 0.084 0.916 25 H 0.096 0.904 26 H 0.083 0.917 27 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.231 -9.135 -1.412 9.792 hybrid contribution 0.100 1.069 -0.173 1.087 sum 3.331 -8.066 -1.585 8.870 Atomic orbital electron populations 1.69940 1.05839 1.26551 1.50974 1.24925 0.94777 0.98954 0.95127 0.86661 0.80242 0.83594 0.78045 1.20827 1.21339 1.19616 1.21390 0.93827 0.89440 1.50075 0.91016 1.17950 0.89916 0.88890 0.94379 0.93558 1.22401 1.01861 0.88569 0.99750 1.21022 0.89401 0.99953 0.98154 1.22195 0.96371 0.89190 1.01741 1.45540 1.18634 1.17900 1.33792 0.72066 1.77146 1.10775 1.14403 1.05817 1.21555 0.98141 0.95618 1.01171 1.17051 0.76120 0.78329 0.79108 1.93185 1.88696 1.91913 1.42100 1.93374 1.94980 1.28782 1.94646 1.93165 1.34818 1.92465 1.95981 1.21481 0.95980 1.00836 0.98776 0.93081 0.91601 0.90368 0.91671 0.90474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.50 12.55 55.43 0.70 -23.80 15 2 C 0.06 1.70 5.34 -17.82 -0.10 1.61 15 3 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 15 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 15 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 15 6 H -0.27 -6.51 7.11 56.52 0.40 -6.11 15 7 C -0.51 -13.47 7.35 -34.44 -0.25 -13.72 15 8 H 0.07 1.93 5.34 -52.49 -0.28 1.65 15 9 C 0.11 2.57 2.76 -91.84 -0.25 2.32 15 10 H 0.05 1.21 8.14 -51.93 -0.42 0.78 15 11 C -0.09 -1.81 5.81 -25.22 -0.15 -1.96 15 12 C -0.05 -0.74 6.79 -26.82 -0.18 -0.93 15 13 C 0.03 0.59 8.07 -81.90 -0.66 -0.07 15 14 N -0.45 -7.22 7.36 33.65 0.25 -6.97 15 15 H 0.44 5.01 8.96 -182.68 -1.64 3.37 15 16 N -0.26 -4.88 12.62 33.72 0.43 -4.45 15 17 C 0.00 0.00 6.57 -82.33 -0.54 -0.54 15 18 C 0.55 11.21 3.55 36.01 0.13 11.34 15 19 F -0.18 -3.49 17.30 2.25 0.04 -3.45 15 20 F -0.14 -3.06 13.46 2.25 0.03 -3.03 15 21 F -0.18 -3.48 17.25 2.25 0.04 -3.44 15 22 C -0.16 -3.47 5.93 -104.68 -0.62 -4.09 15 23 H 0.26 6.85 8.31 -40.82 -0.34 6.51 15 24 H 0.07 1.44 7.91 -51.93 -0.41 1.03 15 25 H 0.08 1.67 8.01 -51.92 -0.42 1.25 15 26 H 0.06 0.89 8.14 -51.93 -0.42 0.46 15 27 H 0.08 1.10 8.14 -51.93 -0.42 0.68 15 LS Contribution 246.52 15.07 3.71 3.71 Total: -1.00 -28.79 246.52 -5.60 -34.39 By element: Atomic # 1 Polarization: 0.10 SS G_CDS: -3.15 Total: -3.04 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: -2.63 Total: -6.05 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: 1.37 Total: -35.23 kcal Atomic # 9 Polarization: -10.02 SS G_CDS: 0.11 Total: -9.92 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -28.79 -5.60 -34.39 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261075395.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.479 kcal (2) G-P(sol) polarization free energy of solvation -28.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds