Wall clock time and date at job start Mon Mar 30 2020 06:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86794 * 120.00176 * 2 1 4 4 H 1.48501 * 109.47342 * 269.99991 * 3 2 1 5 5 H 1.48507 * 109.47355 * 30.00097 * 3 2 1 6 6 H 1.48507 * 109.47438 * 149.99954 * 3 2 1 7 7 C 1.37882 * 119.99669 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99567 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00270 * 0.02562 * 7 2 1 10 10 H 1.08997 * 110.37929 * 302.20764 * 9 7 2 11 11 C 1.54445 * 110.31763 * 64.42943 * 9 7 2 12 12 C 1.54440 * 101.99143 * 144.62007 * 11 9 7 13 13 C 1.51329 * 104.98779 * 334.26648 * 12 11 9 14 14 N 1.35217 * 141.94519 * 196.92568 * 13 12 11 15 15 H 0.96998 * 126.02897 * 359.97438 * 14 13 12 16 16 N 1.39996 * 107.93373 * 179.75446 * 14 13 12 17 17 C 1.30729 * 108.21702 * 0.41317 * 16 14 13 18 18 C 1.50703 * 125.88119 * 179.85413 * 17 16 14 19 19 F 1.39905 * 109.47157 * 269.69339 * 18 17 16 20 20 F 1.39900 * 109.47159 * 149.69640 * 18 17 16 21 21 F 1.39897 * 109.47274 * 29.69331 * 18 17 16 22 22 C 1.35136 * 110.30491 * 16.92341 * 13 12 11 23 23 H 0.97005 * 119.99944 * 0.02562 * 1 2 3 24 24 H 1.09001 * 110.94043 * 26.43636 * 11 9 7 25 25 H 1.09008 * 110.94784 * 262.80019 * 11 9 7 26 26 H 1.08996 * 110.33535 * 215.38753 * 12 11 9 27 27 H 1.08998 * 110.33826 * 93.14147 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.5892 -2.5554 0.8648 11 6 0.4419 -2.6513 -1.3062 12 6 0.5394 -4.1701 -1.5690 13 6 1.8160 -4.6049 -0.8825 14 7 2.7106 -5.6180 -0.8406 15 1 2.6773 -6.4307 -1.3689 16 7 3.6959 -5.2845 0.0963 17 6 3.3982 -4.1175 0.6047 18 6 4.1917 -3.3829 1.6544 19 9 3.7289 -3.7419 2.9250 20 9 4.0384 -2.0039 1.4748 21 9 5.5442 -3.7208 1.5381 22 6 2.2171 -3.6643 0.0011 23 1 -0.4850 0.8401 -0.0004 24 1 0.9012 -2.0856 -2.1169 25 1 -0.5947 -2.3473 -1.1605 26 1 0.5993 -4.3662 -2.6395 27 1 -0.3180 -4.6853 -1.1360 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261075395.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:56 Heat of formation + Delta-G solvation = -86.629569 kcal Electronic energy + Delta-G solvation = -18389.703099 eV Core-core repulsion = 14926.743761 eV Total energy + Delta-G solvation = -3462.959338 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -51.11682 -48.66127 -48.59791 -42.70014 -37.46545 -34.33915 -33.34045 -29.42127 -29.18173 -27.54286 -25.47512 -22.49749 -21.98246 -20.79925 -19.51691 -19.20171 -18.68341 -18.23532 -17.73277 -16.43928 -16.15178 -15.52209 -15.42469 -15.04308 -14.91251 -14.79417 -14.72713 -14.32894 -13.98717 -13.65208 -13.46003 -13.14842 -12.82963 -12.53219 -12.36409 -11.94843 -11.73862 -11.31568 -10.90334 -10.78094 -10.39890 -9.28200 -8.03102 -6.07632 0.47305 1.18029 1.40592 1.43856 1.47779 1.57280 1.88974 2.52106 2.70263 3.08802 3.28720 3.40155 3.69641 4.01939 4.18442 4.47949 4.53480 4.89478 5.00015 5.21782 5.32333 5.43249 5.72689 5.89444 5.97860 6.21296 6.38955 6.48439 6.98205 7.57858 9.05299 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.020748 B = 0.011763 C = 0.008253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.175416 B = 2379.859347 C = 3391.729334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.020 3.980 3 Si 0.935 3.065 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.518 4.518 8 H 0.062 0.938 9 C 0.102 3.898 10 H 0.012 0.988 11 C -0.082 4.082 12 C -0.032 4.032 13 C 0.062 3.938 14 N -0.420 5.420 15 H 0.460 0.540 16 N -0.258 5.258 17 C -0.017 4.017 18 C 0.551 3.449 19 F -0.176 7.176 20 F -0.154 7.154 21 F -0.175 7.175 22 C -0.208 4.208 23 H 0.259 0.741 24 H 0.049 0.951 25 H 0.066 0.934 26 H 0.105 0.895 27 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.582 -9.827 -2.743 10.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.178 4.178 3 Si 0.762 3.238 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.556 4.556 8 H 0.080 0.920 9 C 0.083 3.917 10 H 0.030 0.970 11 C -0.120 4.120 12 C -0.071 4.071 13 C -0.068 4.068 14 N -0.133 5.133 15 H 0.309 0.691 16 N -0.085 5.085 17 C -0.181 4.181 18 C 0.495 3.505 19 F -0.157 7.157 20 F -0.135 7.135 21 F -0.156 7.156 22 C -0.219 4.219 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.085 0.915 26 H 0.124 0.876 27 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 3.297 -10.647 -2.686 11.465 hybrid contribution 0.105 1.467 0.234 1.489 sum 3.403 -9.180 -2.452 10.092 Atomic orbital electron populations 1.70023 1.06636 1.26961 1.52028 1.25513 0.95502 1.01429 0.95380 0.85903 0.78972 0.80773 0.78190 1.20079 1.21055 1.20062 1.21671 0.93664 0.91025 1.49255 0.91982 1.17830 0.90245 0.89003 0.94637 0.97027 1.22140 1.00232 0.92222 0.97452 1.20975 0.89200 0.96218 1.00661 1.22358 0.96269 0.88351 0.99805 1.45501 1.17010 1.18157 1.32641 0.69126 1.77104 1.11495 1.13531 1.06366 1.21567 0.98364 0.96355 1.01796 1.17046 0.76532 0.77610 0.79339 1.93181 1.88732 1.91787 1.42003 1.93327 1.95138 1.30226 1.94776 1.93172 1.34189 1.92291 1.95965 1.21371 0.97205 1.01650 1.01633 0.93162 0.93200 0.91516 0.87637 0.87570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.03 12.55 21.45 0.27 -50.76 15 2 C 0.02 1.11 5.34 84.66 0.45 1.56 15 3 Si 0.93 43.84 29.54 68.60 2.03 45.87 15 4 H -0.28 -12.50 7.11 99.48 0.71 -11.79 15 5 H -0.28 -13.13 7.11 99.48 0.71 -12.43 15 6 H -0.28 -12.99 7.11 99.48 0.71 -12.28 15 7 C -0.52 -27.91 7.35 25.60 0.19 -27.72 15 8 H 0.06 3.41 5.34 -2.91 -0.02 3.40 15 9 C 0.10 4.93 2.76 -11.59 -0.03 4.90 15 10 H 0.01 0.64 8.14 -2.39 -0.02 0.62 15 11 C -0.08 -3.33 5.81 31.57 0.18 -3.14 15 12 C -0.03 -0.90 6.79 30.54 0.21 -0.70 15 13 C 0.06 2.05 8.07 41.52 0.34 2.39 15 14 N -0.42 -11.99 7.36 -47.46 -0.35 -12.34 15 15 H 0.46 8.42 8.96 -213.39 -1.91 6.51 15 16 N -0.26 -9.28 12.62 -47.25 -0.60 -9.88 15 17 C -0.02 -0.70 6.57 43.19 0.28 -0.42 15 18 C 0.55 22.46 3.55 71.24 0.25 22.71 15 19 F -0.18 -6.92 17.30 44.97 0.78 -6.14 15 20 F -0.15 -7.01 13.46 44.97 0.61 -6.41 15 21 F -0.17 -6.55 17.25 44.97 0.78 -5.78 15 22 C -0.21 -8.83 5.93 -19.90 -0.12 -8.95 15 23 H 0.26 13.86 8.31 -92.70 -0.77 13.09 15 24 H 0.05 2.15 7.91 -2.39 -0.02 2.14 15 25 H 0.07 2.83 8.01 -2.38 -0.02 2.81 15 26 H 0.11 2.29 8.14 -2.39 -0.02 2.27 15 27 H 0.11 2.55 8.14 -2.39 -0.02 2.53 15 Total: -1.00 -62.53 246.52 4.59 -57.94 By element: Atomic # 1 Polarization: -2.46 SS G_CDS: -0.67 Total: -3.14 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: 1.75 Total: -9.37 kcal Atomic # 7 Polarization: -72.31 SS G_CDS: -0.68 Total: -72.98 kcal Atomic # 9 Polarization: -20.48 SS G_CDS: 2.16 Total: -18.32 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -62.53 4.59 -57.94 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261075395.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.686 kcal (2) G-P(sol) polarization free energy of solvation -62.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds