Wall clock time and date at job start Mon Mar 30 2020 06:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 120.00022 * 2 1 4 4 H 1.48503 * 109.47194 * 269.99886 * 3 2 1 5 5 H 1.48502 * 109.47428 * 30.00000 * 3 2 1 6 6 H 1.48499 * 109.47473 * 149.99923 * 3 2 1 7 7 C 1.37883 * 119.99948 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99934 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99745 * 180.02562 * 7 2 1 10 10 H 1.09002 * 110.29597 * 57.84546 * 9 7 2 11 11 C 1.54706 * 110.40196 * 295.64255 * 9 7 2 12 12 C 1.54439 * 101.86893 * 215.33789 * 11 9 7 13 13 C 1.51327 * 105.08240 * 25.73867 * 12 11 9 14 14 N 1.35220 * 141.94694 * 163.01665 * 13 12 11 15 15 H 0.97002 * 126.03021 * 0.02562 * 14 13 12 16 16 N 1.39993 * 107.93557 * 180.02562 * 14 13 12 17 17 C 1.30730 * 108.21708 * 359.97438 * 16 14 13 18 18 C 1.50701 * 125.88386 * 180.02562 * 17 16 14 19 19 F 1.39905 * 109.46869 * 269.97877 * 18 17 16 20 20 F 1.39903 * 109.46917 * 29.97276 * 18 17 16 21 21 F 1.39894 * 109.47530 * 149.97450 * 18 17 16 22 22 C 1.35132 * 110.30504 * 343.02476 * 13 12 11 23 23 H 0.97001 * 120.00348 * 0.02562 * 1 2 3 24 24 H 1.08997 * 111.01302 * 97.18992 * 11 9 7 25 25 H 1.09004 * 110.95713 * 333.45924 * 11 9 7 26 26 H 1.09002 * 110.33753 * 266.80882 * 12 11 9 27 27 H 1.08996 * 110.33751 * 144.67181 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0000 10 1 3.8893 -0.6505 0.8661 11 6 4.0514 -0.5657 -1.3065 12 6 5.3178 -1.4107 -1.5658 13 6 5.0544 -2.7348 -0.8823 14 7 5.4841 -4.0163 -0.8419 15 1 6.2056 -4.3931 -1.3695 16 7 4.7039 -4.7032 0.0958 17 6 3.8378 -3.8639 0.6002 18 6 2.8028 -4.1855 1.6473 19 9 1.6221 -4.6026 1.0233 20 9 3.2790 -5.2078 2.4751 21 9 2.5465 -3.0447 2.4154 22 6 4.0375 -2.6134 -0.0007 23 1 -0.4851 0.8400 -0.0004 24 1 4.3069 0.4836 -1.1591 25 1 3.3341 -0.6797 -2.1193 26 1 6.1919 -0.9267 -1.1301 27 1 5.4618 -1.5588 -2.6360 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261075398.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:59 Heat of formation + Delta-G solvation = -65.381011 kcal Electronic energy + Delta-G solvation = -18403.153199 eV Core-core repulsion = 14941.115268 eV Total energy + Delta-G solvation = -3462.037931 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.47038 -47.04785 -46.88969 -41.34663 -36.12710 -32.55315 -31.84281 -28.21368 -27.96445 -26.06594 -23.31961 -21.08029 -20.64104 -19.32019 -17.88022 -17.56650 -17.00751 -16.65224 -16.57221 -14.89261 -14.17870 -13.90155 -13.83471 -13.52033 -13.37277 -13.14678 -13.08440 -12.96658 -12.48181 -12.46064 -12.12247 -11.78915 -11.20608 -10.81649 -10.51291 -10.36612 -10.14924 -9.80082 -9.45228 -9.19251 -8.55332 -7.83064 -6.04026 -4.03471 1.86295 2.52732 2.86897 3.26336 3.35561 3.35856 3.39464 4.22610 4.41445 4.67219 4.84571 5.02304 5.22160 5.29776 5.57672 5.60751 5.73433 5.97233 6.28373 6.40214 6.59710 6.74766 6.91537 7.29931 7.44139 7.64062 7.74150 8.53926 9.00878 9.55976 11.09184 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.022904 B = 0.011516 C = 0.008443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.174168 B = 2430.820379 C = 3315.410424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.074 3.926 3 Si 0.872 3.128 4 H -0.276 1.276 5 H -0.292 1.292 6 H -0.263 1.263 7 C -0.504 4.504 8 H 0.076 0.924 9 C 0.075 3.925 10 H 0.048 0.952 11 C -0.125 4.125 12 C -0.038 4.038 13 C 0.033 3.967 14 N -0.447 5.447 15 H 0.437 0.563 16 N -0.250 5.250 17 C 0.006 3.994 18 C 0.556 3.444 19 F -0.167 7.167 20 F -0.183 7.183 21 F -0.149 7.149 22 C -0.150 4.150 23 H 0.263 0.737 24 H 0.064 0.936 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.923 -4.130 -1.427 11.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.128 4.128 3 Si 0.701 3.299 4 H -0.202 1.202 5 H -0.218 1.218 6 H -0.188 1.188 7 C -0.542 4.542 8 H 0.094 0.906 9 C 0.055 3.945 10 H 0.066 0.934 11 C -0.163 4.163 12 C -0.077 4.077 13 C -0.094 4.094 14 N -0.157 5.157 15 H 0.281 0.719 16 N -0.076 5.076 17 C -0.159 4.159 18 C 0.500 3.500 19 F -0.149 7.149 20 F -0.165 7.165 21 F -0.130 7.130 22 C -0.161 4.161 23 H 0.073 0.927 24 H 0.083 0.917 25 H 0.101 0.899 26 H 0.099 0.901 27 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 11.122 -5.206 -1.362 12.356 hybrid contribution 0.342 1.293 -0.218 1.355 sum 11.464 -3.913 -1.579 12.215 Atomic orbital electron populations 1.69896 1.06230 1.26827 1.50472 1.24951 0.94622 0.98703 0.94516 0.87011 0.80358 0.84130 0.78439 1.20176 1.21831 1.18814 1.20875 0.87742 0.94719 1.50878 0.90594 1.18442 0.97388 0.85271 0.93373 0.93405 1.22968 0.94463 0.97530 1.01351 1.20791 1.00496 0.87579 0.98843 1.22032 0.97875 0.87883 1.01633 1.45514 1.30103 1.06311 1.33748 0.71872 1.77189 1.06558 1.18340 1.05489 1.21579 0.98984 0.94048 1.01274 1.16861 0.79446 0.74291 0.79402 1.93233 1.49041 1.90155 1.82430 1.93167 1.88329 1.60915 1.74048 1.93295 1.94209 1.49748 1.75794 1.20962 0.99126 0.96730 0.99277 0.92654 0.91741 0.89881 0.90146 0.90998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.87 13.96 55.43 0.77 -26.09 15 2 C 0.07 2.06 5.46 -17.82 -0.10 1.96 15 3 Si 0.87 20.40 24.80 -169.99 -4.22 16.19 15 4 H -0.28 -6.16 7.11 56.52 0.40 -5.76 15 5 H -0.29 -6.97 7.11 56.52 0.40 -6.56 15 6 H -0.26 -5.79 6.42 56.52 0.36 -5.43 15 7 C -0.50 -13.68 8.64 -34.44 -0.30 -13.98 15 8 H 0.08 2.30 8.01 -52.49 -0.42 1.88 15 9 C 0.07 1.69 2.32 -91.70 -0.21 1.48 15 10 H 0.05 1.11 7.08 -51.93 -0.37 0.74 15 11 C -0.12 -2.35 5.12 -25.08 -0.13 -2.48 15 12 C -0.04 -0.55 6.78 -26.82 -0.18 -0.73 15 13 C 0.03 0.57 8.07 -81.90 -0.66 -0.09 15 14 N -0.45 -6.83 7.36 33.65 0.25 -6.58 15 15 H 0.44 4.65 8.96 -182.68 -1.64 3.01 15 16 N -0.25 -4.65 12.62 33.71 0.43 -4.23 15 17 C 0.01 0.13 6.57 -82.33 -0.54 -0.41 15 18 C 0.56 11.51 3.55 36.01 0.13 11.64 15 19 F -0.17 -3.62 17.30 2.25 0.04 -3.58 15 20 F -0.18 -3.43 17.25 2.25 0.04 -3.39 15 21 F -0.15 -3.29 16.65 2.25 0.04 -3.26 15 22 C -0.15 -3.15 5.79 -104.68 -0.61 -3.76 15 23 H 0.26 7.41 8.31 -40.82 -0.34 7.07 15 24 H 0.06 1.15 5.96 -51.93 -0.31 0.84 15 25 H 0.08 1.65 7.92 -51.93 -0.41 1.24 15 26 H 0.08 0.99 8.14 -51.93 -0.42 0.57 15 27 H 0.07 0.86 8.14 -51.93 -0.42 0.44 15 LS Contribution 245.38 15.07 3.70 3.70 Total: -1.00 -30.87 245.38 -4.72 -35.59 By element: Atomic # 1 Polarization: 1.21 SS G_CDS: -3.17 Total: -1.96 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -2.60 Total: -6.38 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: 1.45 Total: -36.90 kcal Atomic # 9 Polarization: -10.35 SS G_CDS: 0.12 Total: -10.23 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -4.22 Total: 16.19 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -30.87 -4.72 -35.59 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261075398.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.795 kcal (2) G-P(sol) polarization free energy of solvation -30.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds